[OpenSPIM] acquisition error
Dr S. Hoehn
S.Hoehn at damtp.cam.ac.uk
Thu Apr 6 11:31:03 CDT 2017
Dear All,
when I try to acquire a stack with the OpenSPIM software I get the error
below (it used to work before). I updated Fiji, but that didn't fix it.
Has anyone seen this and knows what to do?
Thanks a lot!
Best wishes,
Stephanie
Unable to retrieve constructor for class
loci.formats.services.OMEXMLServiceImpl
at
loci.common.services.ServiceFactory.getConstructor(ServiceFactory.java:190)
at
loci.common.services.ServiceFactory.getInstance(ServiceFactory.java:161)
at spim.io.OMETIFFHandler.<init>(OMETIFFHandler.java:73)
at spim.SPIMAcquisition.actionPerformed(SPIMAcquisition.java:1982)
at
javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2018)
at
javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2341)
at
javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:402)
at
javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:259)
at
javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:252)
at java.awt.Component.processMouseEvent(Component.java:6505)
at javax.swing.JComponent.processMouseEvent(JComponent.java:3320)
at java.awt.Component.processEvent(Component.java:6270)
at java.awt.Container.processEvent(Container.java:2229)
at java.awt.Component.dispatchEventImpl(Component.java:4861)
at java.awt.Container.dispatchEventImpl(Container.java:2287)
at java.awt.Component.dispatchEvent(Component.java:4687)
at
java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4832)
at
java.awt.LightweightDispatcher.processMouseEvent(Container.java:4492)
at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4422)
at java.awt.Container.dispatchEventImpl(Container.java:2273)
at java.awt.Window.dispatchEventImpl(Window.java:2719)
at java.awt.Component.dispatchEvent(Component.java:4687)
at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:735)
at java.awt.EventQueue.access$200(EventQueue.java:103)
at java.awt.EventQueue$3.run(EventQueue.java:694)
at java.awt.EventQueue$3.run(EventQueue.java:692)
at java.security.AccessController.doPrivileged(Native Method)
at
java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:76)
at
java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:87)
at java.awt.EventQueue$4.run(EventQueue.java:708)
at java.awt.EventQueue$4.run(EventQueue.java:706)
at java.security.AccessController.doPrivileged(Native Method)
at
java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:76)
at java.awt.EventQueue.dispatchEvent(EventQueue.java:705)
at
java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:242)
at
java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:161)
at
java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:150)
at
java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:146)
at
java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:138)
at java.awt.EventDispatchThread.run(EventDispatchThread.java:91)
Caused by: java.lang.NoClassDefFoundError:
loci/common/xml/XMLTools$SchemaReader
at java.lang.Class.forName0(Native Method)
at java.lang.Class.forName(Class.java:190)
at
loci.common.services.ServiceFactory.getConstructor(ServiceFactory.java:185)
... 39 more
Caused by: java.lang.ClassNotFoundException:
loci.common.xml.XMLTools$SchemaReader
at java.net.URLClassLoader$1.run(URLClassLoader.java:366)
at java.net.URLClassLoader$1.run(URLClassLoader.java:355)
at java.security.AccessController.doPrivileged(Native Method)
at java.net.URLClassLoader.findClass(URLClassLoader.java:354)
at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:308)
at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
... 42 more
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