[OpenSPIM] acquisition error

Dr S. Hoehn S.Hoehn at damtp.cam.ac.uk
Thu Apr 6 11:31:03 CDT 2017


Dear All,

when I try to acquire a stack with the OpenSPIM software I get the error 
below (it used to work before). I updated Fiji, but that didn't fix it. 
Has anyone seen this and knows what to do?

Thanks a lot!

Best wishes,
Stephanie



Unable to retrieve constructor for class 
loci.formats.services.OMEXMLServiceImpl
	at 
loci.common.services.ServiceFactory.getConstructor(ServiceFactory.java:190)
	at 
loci.common.services.ServiceFactory.getInstance(ServiceFactory.java:161)
	at spim.io.OMETIFFHandler.<init>(OMETIFFHandler.java:73)
	at spim.SPIMAcquisition.actionPerformed(SPIMAcquisition.java:1982)
	at 
javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2018)
	at 
javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2341)
	at 
javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:402)
	at 
javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:259)
	at 
javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:252)
	at java.awt.Component.processMouseEvent(Component.java:6505)
	at javax.swing.JComponent.processMouseEvent(JComponent.java:3320)
	at java.awt.Component.processEvent(Component.java:6270)
	at java.awt.Container.processEvent(Container.java:2229)
	at java.awt.Component.dispatchEventImpl(Component.java:4861)
	at java.awt.Container.dispatchEventImpl(Container.java:2287)
	at java.awt.Component.dispatchEvent(Component.java:4687)
	at 
java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4832)
	at 
java.awt.LightweightDispatcher.processMouseEvent(Container.java:4492)
	at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4422)
	at java.awt.Container.dispatchEventImpl(Container.java:2273)
	at java.awt.Window.dispatchEventImpl(Window.java:2719)
	at java.awt.Component.dispatchEvent(Component.java:4687)
	at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:735)
	at java.awt.EventQueue.access$200(EventQueue.java:103)
	at java.awt.EventQueue$3.run(EventQueue.java:694)
	at java.awt.EventQueue$3.run(EventQueue.java:692)
	at java.security.AccessController.doPrivileged(Native Method)
	at 
java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:76)
	at 
java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:87)
	at java.awt.EventQueue$4.run(EventQueue.java:708)
	at java.awt.EventQueue$4.run(EventQueue.java:706)
	at java.security.AccessController.doPrivileged(Native Method)
	at 
java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:76)
	at java.awt.EventQueue.dispatchEvent(EventQueue.java:705)
	at 
java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:242)
	at 
java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:161)
	at 
java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:150)
	at 
java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:146)
	at 
java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:138)
	at java.awt.EventDispatchThread.run(EventDispatchThread.java:91)
Caused by: java.lang.NoClassDefFoundError: 
loci/common/xml/XMLTools$SchemaReader
	at java.lang.Class.forName0(Native Method)
	at java.lang.Class.forName(Class.java:190)
	at 
loci.common.services.ServiceFactory.getConstructor(ServiceFactory.java:185)
	... 39 more
Caused by: java.lang.ClassNotFoundException: 
loci.common.xml.XMLTools$SchemaReader
	at java.net.URLClassLoader$1.run(URLClassLoader.java:366)
	at java.net.URLClassLoader$1.run(URLClassLoader.java:355)
	at java.security.AccessController.doPrivileged(Native Method)
	at java.net.URLClassLoader.findClass(URLClassLoader.java:354)
	at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
	at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:308)
	at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
	... 42 more




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