[OpenSPIM] acquisition error

[Dr S. Hoehn]

I found this entry in the ImageJ Forum suggesting to disable the 
BioFormats update site in the ImageJ updater. I did that and it fixed 
the acquisition problem.

http://imagej.1557.x6.nabble.com/Bio-Formats-problem-td5017863.html



On 2017-04-06 17:31, Dr S. Hoehn wrote:
> Dear All,
> 
> when I try to acquire a stack with the OpenSPIM software I get the
> error below (it used to work before). I updated Fiji, but that didn't
> fix it. Has anyone seen this and knows what to do?
> 
> Thanks a lot!
> 
> Best wishes,
> Stephanie
> 
> 
> 
> Unable to retrieve constructor for class 
> loci.formats.services.OMEXMLServiceImpl
> at 
> loci.common.services.ServiceFactory.getConstructor(ServiceFactory.java:190)
> at 
> loci.common.services.ServiceFactory.getInstance(ServiceFactory.java:161)
> at spim.io.OMETIFFHandler.<init>(OMETIFFHandler.java:73)
> at spim.SPIMAcquisition.actionPerformed(SPIMAcquisition.java:1982)
> at 
> javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2018)
> at 
> javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2341)
> at
> javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:402)
> at 
> javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:259)
> at
> javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:252)
> at java.awt.Component.processMouseEvent(Component.java:6505)
> at javax.swing.JComponent.processMouseEvent(JComponent.java:3320)
> at java.awt.Component.processEvent(Component.java:6270)
> at java.awt.Container.processEvent(Container.java:2229)
> at java.awt.Component.dispatchEventImpl(Component.java:4861)
> at java.awt.Container.dispatchEventImpl(Container.java:2287)
> at java.awt.Component.dispatchEvent(Component.java:4687)
> at 
> java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4832)
> at 
> java.awt.LightweightDispatcher.processMouseEvent(Container.java:4492)
> at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4422)
> at java.awt.Container.dispatchEventImpl(Container.java:2273)
> at java.awt.Window.dispatchEventImpl(Window.java:2719)
> at java.awt.Component.dispatchEvent(Component.java:4687)
> at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:735)
> at java.awt.EventQueue.access$200(EventQueue.java:103)
> at java.awt.EventQueue$3.run(EventQueue.java:694)
> at java.awt.EventQueue$3.run(EventQueue.java:692)
> at java.security.AccessController.doPrivileged(Native Method)
> at
> java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:76)
> at
> java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:87)
> at java.awt.EventQueue$4.run(EventQueue.java:708)
> at java.awt.EventQueue$4.run(EventQueue.java:706)
> at java.security.AccessController.doPrivileged(Native Method)
> at
> java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:76)
> at java.awt.EventQueue.dispatchEvent(EventQueue.java:705)
> at
> java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:242)
> at
> java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:161)
> at
> java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:150)
> at 
> java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:146)
> at 
> java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:138)
> at java.awt.EventDispatchThread.run(EventDispatchThread.java:91)
> Caused by: java.lang.NoClassDefFoundError: 
> loci/common/xml/XMLTools$SchemaReader
> at java.lang.Class.forName0(Native Method)
> at java.lang.Class.forName(Class.java:190)
> at 
> loci.common.services.ServiceFactory.getConstructor(ServiceFactory.java:185)
> ... 39 more
> Caused by: java.lang.ClassNotFoundException:
> loci.common.xml.XMLTools$SchemaReader
> at java.net.URLClassLoader$1.run(URLClassLoader.java:366)
> at java.net.URLClassLoader$1.run(URLClassLoader.java:355)
> at java.security.AccessController.doPrivileged(Native Method)
> at java.net.URLClassLoader.findClass(URLClassLoader.java:354)
> at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
> at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:308)
> at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
> ... 42 more
> 
> 
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