[OpenSPIM] "Acquire SPIM image" crash

HongKee Moon moon at mpi-cbg.de
Wed Nov 11 04:19:58 CST 2015


Hi Martin,

Maybe, I can help in this case. However, the problem is that I cannot reproduce that error because I have a different setup.
One of my doubts is that we try to get the values from stages in the source code(https://github.com/openspim/SPIMAcquisition/blob/master/src/main/java/spim/SPIMAcquisition.java#L1057-L1077 <https://github.com/openspim/SPIMAcquisition/blob/master/src/main/java/spim/SPIMAcquisition.java#L1057-L1077>).
It seemed to cause the error.

If you would not mind, I can provide you a custom-made plugin for verifying the problem, which might involve several (sending a plugin | receiving a result)+.
Then, I would be able to fix the bug. Please, let me know if you like this way.

Cheers,
HongKee


> On Nov 10, 2015, at 6:40 PM, Martin Capek <martin.capek at fgu.cas.cz> wrote:
> 
> Dear all,
> could anybody help me with the following software problem? 
> 
> Micromanager knows all components of our SPIM system: CUBE laser, Picard stage, Andor camera. I can use all of them independently without troubles in MM: opening and closing laser shutter, moving with the stage in "Stage Control", seeing images in "Live" view. However, when opening "Acquire SPIM image", nothing happens and the Java exceptions are then in the corelog,  please, see the attachments.
> 
> Thank you very much for your help and comments!
> Martin
> 
> 
> ----------------------
> Martin Capek, Ph.D. 
> Dpt. Biomathematics
> Institute of Physiology ASCR, v.v.i. 
> Videnska 1083
> 142 20 Praha 4
> 
> Tel. +420 241 062 334
> http://fgu.cas.cz <http://fgu.cas.cz/>
> 
> 
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--
HongKee Moon
Software Engineer
Scientific Computing Facility

Max Planck Institute of Molecular Cell Biology and Genetics
Pfotenhauerstr. 108
01307 Dresden
Germany

fon: +49 351 210 2740
fax: +49 351 210 1689
www.mpi-cbg.de

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