[OpenSPIM] aquisition speed

[Feinstein, Timothy N]

One other thing - in theory you could be running against the write buffer or drive speed of your computer.  For high speed imaging it may be important to increase your RAM and use a SSD.

Best,


Tim

Timothy Feinstein, Ph.D.
Research Scientist
University of Pittsburgh Department of Developmental Biology


From: <openspim-bounces at openspim.org<mailto:openspim-bounces at openspim.org>> on behalf of Fredrik Ek <fredrik.ek at med.lu.se<mailto:fredrik.ek at med.lu.se>>
Date: Wednesday, October 7, 2015 at 10:50 AM
To: "openspim at openspim.org<mailto:openspim at openspim.org>" <openspim at openspim.org<mailto:openspim at openspim.org>>
Subject: [OpenSPIM] aquisition speed

Hi all,

We have started to use the SPIM system for calcium imaging and thus would like increase acquisition speed. What frame rates can be achieved with the OpenSPIM setup? What are the major limitations, considering software (micromanager) versus hardware (stage). I have noticed that the speed is ok in the beginning of a time laps exp but reduces over time (7-10 fps down to 3 fps). The system is has an Flash 4 so far from theoretical camera frame rates. I have a good workstation with +100 gb physical memory. I have increased the buffer memory in micromanager to 20 Gb (even tested with 50 Gb but no additional effect), writing data to a virtual harddrive generated in the physical memory, deselected xy and twister during acquisitions (noticed some effects) and uses short exposure times. Any other tips how to improve the speed.

Thanks again for a great project!

BR

Fredrik

Fredrik Ek, PhD,
Researcher, Chemical Biology & Therapeutics
Department of Experimental Medical Science
Lund University, BMC D10
S-221 84 Lund, SWEDEN
------------------------
Fredrik.Ek at med.lu.se<mailto:Fredrik.Ek at med.lu.se>
Phone: +46-727 17 22 05

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