[OpenSPIM] OpenSPIM app 64bit and other issues

[Monika Pawłowska]

Hi Ulrik,

thanks a lot! So far I installed it on my office PC (also 64bit Win7) to  
test it. Micro-manager starts from Fiji without any problems and the SPIM  
plugin is listed in the menu. I have no devices connected in my office, so  
I couldn't run the plugin anyway.

I only got one error message from Fiji:

CriticalError: plugins/Volume_Viewer-2.01.1-SNAPSHOT.jar
Multiple locally-modified versions of  
plugins/Volume_Viewer-2.01.1-SNAPSHOT.jar exist:  
C:\Users\MPAWLO~1\DOWNLO~1\mFiji\mFiji\plugins\Volume_Viewer.jar

But I told it to delete duplicates and that's it.

Only one comment: I noticed that the mFiji.zip file contains jdk1.6.0_24,  
is this needed or just an artifact?

And again, thanks, I lost far too much time with it before I had the idea  
to search the list archives.

Regards,
Monika

W dniu .01.2015 o 12:42 Ulrik Günther <guenther at mpi-cbg.de> pisze:

>   Hello Monika,
>
>
> we’re currently working on making OpenSPIM into a simple MicroManager  
> plugin so the whole custom MicroManager package is not needed anymore. 
> This will also solve your 64bit troubles. For the moment, I can provide  
> you with a 64bit build based on MicroManager 1.4.18, which you can find  
> at https://idisk-srv1.mpi-cbg.de/~gunther/OpenSPIM/mFiji.zip
>
>
>
> You’ll also need the OpenSPIM plugin, which you can find at  
> https://idisk-srv1.mpi-cbg.de/~gunther/OpenSPIM/SPIMacquisition.jar
>  - this has to be put in mmplugins/
> Please also make sure you have the 1.8 version of the Java JRE installed.
>
>
> Let me know if that worked for you :-)
>
>
> cheers,
>
>
> ulrik
>
>
>
>
> —
> Ulrik Günther, Dipl.-Phys.
> PhD Student
> MOSAIC Group & Tomancak Lab, Center of Systems Biology Dresden
> Max Planck Institute of Molecular Cell Biology and Genetics
> Pfotenhauerstr. 108, D-01307 Dresden, Germany
>
>
>
> E-Mail: guenther at mpi-cbg.de
>
>
>
>
>> On Jan 16, 2015, at 12:33 PM, Monika Pawłowska  
>> <m.pawlowska at nencki.gov.pl> wrote:
>>
>>
>> Hi all,
>>
>>
>> I am new here, so first of all - big thanks to everybody for taking time
>> to help!
>>
>>
>> Now, to the topic. Are there any news regarding a possible 64bit version 
>> of the package? Or alternatively, an instruction that one can follow to 
>> install/build a 64bit version on one's own machine? For example by  
>> addingthe 64bit micro-manager .dll libraries manually?
>>
>>
>> In the end I got the package running by using the ImageJ_win32 in 
>> compatibility mode. However, the solution Luke proposed in one of his 
>> emails - to put a java folder in the openspim.app folder - doesn't work 
>> for me and I was forced to change the JAVA_HOME option to use the 32bit 
>> java globally. Now I'm concerned that it will mess up other things. Do  
>> youhave any experience with that?
>>
>>
>> Best regards,
>>
>>
>> --Monika Pawłowska
>> Nencki Institute
>> Laboratory of Neurobiology
>> 3, Pasteur Street
>> 02-093 Warsaw, Poland
>> phone: (+48) 22 5892 427
>>
>>
>> _______________________________________________
>> OpenSPIM mailing list
>> OpenSPIM at openspim.org
>> http://openspim.org/mailman/listinfo/openspim
>>
>>


-- 
Monika Pawłowska
Nencki Institute
Laboratory of Neurobiology
3, Pasteur Street
02-093 Warsaw, Poland
phone: (+48) 22 5892 427