[OpenSPIM] SPIMAcquisition plugin installation fails

[Carsten Wolff]

Hi Johannes,

thank you very much for your help and effort. Unfortunately your idea to 
copy the FIJI dependencies to Micro-Manager didn't work. I get the same 
inactive 'plugins' sub-menu as before.


I thought I have to start from Micro-Manager installers instead of 
starting in FIJI. Because trying to open Micro-Manager from FIJI gives 
me another error message:

'Failed to load the mmcorej_wrap native library 
mmcorej.MMCoreJJNI.swig_module_init()V'

Something with the 32/64bit java system, right? How can I solve it?

cheers
Carsten



Am 14.02.2015 12:48, schrieb Johannes Schindelin:
> On 2015-02-13 18:04, Carsten Wolff wrote:
> 
>> After launching Micro-Manager the 'plugin' sub
>> menu is not active. When I remove SPIMacquisition plugin from the
>> mmplugin folder and I start MM it is active again and I can go for
>> plugins. Any idea what the problem could be?
> 
> Starting Micro-Manager from the command-line, you should see something
> like this in the log:
> 
> ```
> [...]
> java.lang.NoClassDefFoundError: net/imglib2/RandomAccessibleInterval
> [...]
> ```
> 
> This message indicates that ImgLib2 is missing from your installation.
> My idea was to start from a Fiji installation where the
> Micro-Manager-dev update site is activated. That way, ImgLib2 is
> already installed.
> 
> However, if you insist on using a Micro-Manager installed from the
> official Micro-Manager installers, you can add those dependencies
> manually, as follows:
> 
> 1. Run `mvn dependency:copy-dependencies` in the SPIMAcquisition 
> directory
> 2. From `target/dependency/` in that subdirectory, copy the
> `imglib2-*.jar` files to your Micro-Manager's `mmplugins/`
> subdirectory.
> 3. Copy `target/SPIMAcquisition-1.0.0-SNAPSHOT.jar` to the
> `mmplugins/` subdirectory, too.
> 4. Restart Micro-Manager.
> 
> I also added these instructions to the `README.md` file of the
> SPIMAcquisition project.
> 
> Ciao,
> Johannes