[OpenSPIM] SPIMAcquisition plugin installation fails

Johannes Schindelin johannes.schindelin at gmx.de
Sat Feb 14 05:48:23 CST 2015


On 2015-02-13 18:04, Carsten Wolff wrote:

> After launching Micro-Manager the 'plugin' sub
> menu is not active. When I remove SPIMacquisition plugin from the
> mmplugin folder and I start MM it is active again and I can go for
> plugins. Any idea what the problem could be?

Starting Micro-Manager from the command-line, you should see something 
like this in the log:

```
[...]
java.lang.NoClassDefFoundError: net/imglib2/RandomAccessibleInterval
[...]
```

This message indicates that ImgLib2 is missing from your installation. 
My idea was to start from a Fiji installation where the 
Micro-Manager-dev update site is activated. That way, ImgLib2 is already 
installed.

However, if you insist on using a Micro-Manager installed from the 
official Micro-Manager installers, you can add those dependencies 
manually, as follows:

1. Run `mvn dependency:copy-dependencies` in the SPIMAcquisition 
directory
2. From `target/dependency/` in that subdirectory, copy the 
`imglib2-*.jar` files to your Micro-Manager's `mmplugins/` subdirectory.
3. Copy `target/SPIMAcquisition-1.0.0-SNAPSHOT.jar` to the `mmplugins/` 
subdirectory, too.
4. Restart Micro-Manager.

I also added these instructions to the `README.md` file of the 
SPIMAcquisition project.

Ciao,
Johannes




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