[OpenSPIM] OpenSPIM in 64bit system?

Tue Jul 8 17:31:40 CDT 2014

This is not what I did. Just use the openspim.org distribution. It comes
with *everything pre installed*. Dont do anything else, you shouldn't need
to download the fiji installer. Just open the OpenSpim distribution in
compatibility mode. Micromanager will be in the plugins waiting for you.

Fwiw I haven't updated either. But if you download from the openspim.org
website it should be relatively fresh and up to date.

Cheers Kieran
On 09/07/2014 8:04 AM, "Ke Li" <tianlankeke at gmail.com> wrote:

> For base installation, you mean install the OpenSPIM/Fiji package here:
> http://openspim.org/Downloads again?
>
> I followed the troubleshooting instructions in the compatibility tab and
> the result is "its an incompatible application".
>
> I did the following steps to open the uManager studio:
>
>    1. Download the Fiji package of the continuous release version for
> Windows 7(64bit) from  : http://fiji.sc/Fiji
>
>    2. Download the OpenSPIM package (*OpenSPIM-20140207.zip*) from :
> http://openspim.org/Downloads
>
>    3. Launch Fiji: in the Fiji.app/folder, open *ImageJ-win64.exe*
>
>    4. Update Fiji (and OpenSPIM and uManager):* Help->Update Fiji *
>
>    5. Run Micromanager Studio: In the *OpenSPIM.app* folder, open
> *ImageJ-win32.exe*, then *plugins->Micro-manager->Micro-manager studio*
> (Before this step, I have followed your steps and set the compatibility
> mode of the *ImageJ-win32.exe* as Windows XP (Service Pack 3))
>
> After Step 5, an error shows as follows:
> *    Error:Failed to load the MMCoreJ_wrap native library
> mmcorej.MMCoreJJNI.swig_module_init()V*
>
> To solve this error, I copied the file *MMCoreJ_wrap.dll* in the *mm*
> folder of the *OpenSPIM.app* folder into the same directory of the *ImageJ-win32.exe.
> *Then when I reloaded the uManager studio from the ImageJ (32bit), the
> error was as follows:
>    *Error:Failed to load the MMcoreJ_wrap native library *
> *
>  C:\Users\Kuolab\Downloads\SPIM\OpenSPIM-20140207\OpenSPIM.app\MMCoreJ_wrap.dll:
> Can't load IA 32-bit. dll on a AMD 64-bit platform. *
>
>     I tried to open the uManager studio from *ImageJ-win32.exe and*
> *ImageJ-win64.exe*, while the second error above happened all the time in
> the two cases.
>
>    The camera driver has been installed correctly before based on the test
> image results.
>
> Is there any step I misconducted? (Maybe copying the *MMCoreJ_warp.dll*
> into the same directory of the *ImageJ-win32.exe* is not correct?)
>
> Thanks,
> Ke
>
> Ke Li
> Research Assistant
> Biomedical Engineering
> Johns Hopkins University
> Phone: 410-934-9802
> Email: kli26 at jhu.edu
>
>
> On Tue, Jul 8, 2014 at 5:16 PM, Kieran Short <kieran.short at gmail.com>
> wrote:
>
>> This is strange. I'm not sure what OpenSPIM fiji build we are running but
>> it works here.
>>
>> Have you tried going back to a base installation?
>>
>> It sounds odd that uManager can even detect your pc as a "amd64" system
>> as compatibility mode should mask that as 32bit.
>>
>> What says "its an incompatible application"?
>>
>> Of course, mm *should* be able to load a 32bit dll on 64bit architecture.
>> I don't understand why that should be a problem for mm in the first place.
>> The whole x86 instruction set is encapsulated within the x64 set. To
>> Johannes/Mark is this directly related to the available jre?
>>  On 09/07/2014 5:18 AM, "Ke Li" <tianlankeke at gmail.com> wrote:
>>
>>> Hi Kieran,
>>>
>>> I followed your suggestion. While the problem still existed. When I
>>> tried to launch the uManager studio from the ImageJ(ImageJ-win32.exe) in
>>> the OpenSPIM.app folder, an error: *Failed to load the MMCoreJ_wrap
>>> native library* (*Can't load IA 32-bit.dll on a AMD 64-bit platform*)
>>> showed every time. I did the troubleshooting and the result showed that
>>> it's a incompatible application.
>>>
>>> Is there any other way to solve this problem?
>>>
>>> Thanks,
>>> Ke
>>>
>>> Ke Li
>>> Research Assistant
>>> Biomedical Engineering
>>> Johns Hopkins University
>>> Phone: 410-934-9802
>>> Email: kli26 at jhu.edu
>>>
>>>
>>> On Mon, Jul 7, 2014 at 9:03 PM, Ke Li <tianlankeke at gmail.com> wrote:
>>>
>>>> Hi Kieran,
>>>>
>>>> Thanks so much for your solution. I'll try it tomorrow.
>>>>
>>>> Best,
>>>> Ke
>>>>
>>>> Kieran Short <kieran.short at gmail.com>于2014年7月7日星期一写道：
>>>>
>>>> Run it in compatibility mode.
>>>>>
>>>>> To do this, do the following.
>>>>>
>>>>> Right click imagej/fiji.
>>>>> Select properties.
>>>>> Go to the Compatibility tab.
>>>>> Check the "run this program in compatibility mode for:" box.
>>>>> Select Windows XP (Service Pack 3).
>>>>> Click Apply.
>>>>> Click OK.
>>>>>
>>>>> Then try and run it.
>>>>>
>>>>> When I can work out how to include plugins during compilation I will
>>>>> try to compile.a win64 version. At such q time i'd happily provide
>>>>> binaries. Im only a part time python progammer though and therefore have
>>>>> little experience with debugging compilation issues. Since Compatibility
>>>>> Mode 'just works' for us, it isn't a high priority for me.
>>>>>
>>>>> Cheers Kieran
>>>>> On 08/07/2014 10:32 AM, "Ke Li" <tianlankeke at gmail.com> wrote:
>>>>>
>>>>>> Hi Mark & Luke,
>>>>>>
>>>>>> I'm writing to ask whether there is a solution for running the
>>>>>> openSPIM software in the 64bit system? (The uManager studio can't be loaded
>>>>>> normally in my 64 bit system) Can I get access to the source code for
>>>>>> modification?
>>>>>>
>>>>>> [image: Inline image 1]
>>>>>>
>>>>>> Thanks,
>>>>>> Ke
>>>>>>
>>>>>> Ke Li
>>>>>> Research Assistant
>>>>>> Biomedical Engineering
>>>>>> Johns Hopkins University
>>>>>> Phone: 410-934-9802
>>>>>> Email: kli26 at jhu.edu
>>>>>>
>>>>>> _______________________________________________
>>>>>> OpenSPIM mailing list
>>>>>> OpenSPIM at openspim.org
>>>>>> http://openspim.org/mailman/listinfo/openspim
>>>>>>
>>>>>>
>>>>
>>>> --
>>>> Ke Li
>>>> Research Assistant
>>>> Biomedical Engineering
>>>> Johns Hopkins University
>>>> Phone: 410-934-9802
>>>> Email: kli26 at jhu.edu
>>>>
>>>>
>>>
>
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