[OpenSPIM] A question about the Light Sheet software

[Cristian Undurraga]

Hi Luke,

Well, somewhere, Alexis is shaking his head. ;-) He did, after all, warn us about this...
:D 

Please try the following:
1. Check that the file "C:\Users\User\Desktop\OpenSPIM.app\mm\win32\mmgr_dal_Cobolt.dll" exists (it probably does).
	Yes, the file exists
2. Send a new CoreLog (from a day when this error was encountered) to me.
	Sending the corelog: CoreLog20140402.txt
3. Download a new, 32-bit version of Micro-Manager from the website[1] and install it.
	Downloaded and installed the last version (32bit_1.4.16)
4. Copy the file "C:\Program Files\Micro-Manager 1.4\mmgr_dal_Cobolt.dll" [2] to "C:\Users\User\Desktop\OpenSPIM.app\mm\win32\" (and overwrite the file that exists there).
	I didn`t find the file in "Program Files x86" (althought we are using "Windows 7_64bit"), I copied the file "C:\Program Files\Micro-Manager 1.4\mmgr_dal_Cobolt.dll" to "C:\Users\User\Desktop\OpenSPIM.app\mm\win32\"
5. Try launching the software again. If it still fails, send me yet another CoreLog.
	I launched the "C:\Users\User\Desktop\OpenSPIM.app", loading the Configuration File "OpenSPIM01.app.cfg" and I had no problem recognized the devices, but now when I click "Plugins" in the MicroManager windows, don´t appear nothing! :O
I sending the second CoreLog for today (CoreLog20140407.txt).

Other data: 1) A message appeared to update Java for Windows, would be necessary?. 2) when I specified a new directory for ex. a "file 1" in the desktop, the pic was no taken or the time-lapse don`t start, but also, if I had some file inside the "file 1", these were deleted without any notice!.

Thanks to you for the help!, I guess the idea is that all we go to cooperate with the project.
:-)
Best,

Cristian


Thanks again, and I'm sorry for the trouble!
Luke


P.S. Please use reply-all, to keep the mailing list CC'd. :-)


[1] https://micro-manager.org/wiki/Download_Micro-Manager_Latest_Release
[2] If your computer is 64-bit Windows 7, it will be under "Program Files (x86)" instead. 




El 04-04-2014, a las 906, Luke Stuyvenberg escribió:

> Hi Cristian,
> 
>> I Updated the Fiji (just Help->Update Fiji) and had many files to update, I accepted all.
>> Now is running ImageJ 1.48t and Java 1.6.0_24, and the MicroManager 1.4.x dev (Picture 1), but when I start the OpenSpim.app, appeared the message of "Picture2", and doesn`t recognize the Cobolt device.
> Well, somewhere, Alexis is shaking his head. ;-) He did, after all, warn us about this...
> 
> 
> Please try the following:
> 1. Check that the file "C:\Users\User\Desktop\OpenSPIM.app\mm\win32\mmgr_dal_Cobolt.dll" exists (it probably does).
> 2. Send a new CoreLog (from a day when this error was encountered) to me.
> 3. Download a new, 32-bit version of Micro-Manager from the website[1] and install it.
> 4. Copy the file "C:\Program Files\Micro-Manager 1.4\mmgr_dal_Cobolt.dll" [2] to "C:\Users\User\Desktop\OpenSPIM.app\mm\win32\" (and overwrite the file that exists there).
> 5. Try launching the software again. If it still fails, send me yet another CoreLog.
> 
> 
> Thanks again, and I'm sorry for the trouble!
> Luke
> 
> 
> P.S. Please use reply-all, to keep the mailing list CC'd. :-)
> 
> 
> [1] https://micro-manager.org/wiki/Download_Micro-Manager_Latest_Release
> [2] If your computer is 64-bit Windows 7, it will be under "Program Files (x86)" instead.
> 
> On 04/01/14, Cristian Undurraga  wrote:
>> Hi Luke,
>> 
>> What`s could gone wrong?
>> Best,
>> 
>> Cristian
>> 
>> 
>> ----- Picture1.jpg -----
>> 
>> 
>> ----- Picture2.jpg -----
>> 
>> 
>> 
>> El 31-03-2014, a las 547, Luke Stuyvenberg escribió:
>> 
>>> Hi Christian,
>>> 
>>> On 03/31/14, Cristian Undurraga wrote:
>>>> Hi Luke,
>>>> 
>>>> I`m sending the file that you asked after to try to start a time lapse, specified a new directory in the desktop (new folder named "1" in the desktop).Thank you very much. The file seems to indicate that a necessary JAR file is missing for OME-TIFF output -- the most likely candidate is OpenSPIM.app/jars/bio-formats/formats-api-5.0.0.jar (the latest version available through the Fiji Updater).
>>> 
>>> 
>>> Did you download the OpenSPIM package from our website? If you run the Fiji Updater (Help -> Update Fiji), it should give you a list of files that need to be updated. Most likely, you can accept the Updater's proposal by clicking "Accept changes" at the bottom; this should fix your issue.
>>> 
>>> 
>>> I should be clear that this is different from updating Micro-Manager. Our plugin does not currently come with Micro-Manager, so if you download Micro-Manager's latest version from their website, you won't be able to control an OpenSPIM. The Fiji updater, on the other hand, downloads newer versions of the files OpenSPIM relies on.
>>> 
>>> 
>>> If you have any questions, or if this doesn't resolve your issue, please don't hesitate to mail me and/or the list (openspim at openspim.org) again!
>>> Thanks,
>>> Luke

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