2014-04-02T15:35:17.317174 p:7584 t:4760 [LOG] -------->>
2014-04-02T15:35:17.317174 p:7584 t:4760 [LOG] Core session started by User on OPENSPIM01
2014-04-02T15:35:17.317174 p:7584 t:4760 [LOG] Debug logging disabled
2014-04-02T15:35:17.317174 p:7584 t:4760 [LOG] Debug logging enabled
2014-04-02T15:35:17.317174 p:7584 t:4760 [LOG] > MM Studio version: 1.4.x dev
2014-04-02T15:35:17.317174 p:7584 t:4760 [LOG] > MMCore version 2.3.2
2014-04-02T15:35:17.317174 p:7584 t:4760 [LOG] > Device API version 57, Module API version 8
2014-04-02T15:35:17.317174 p:7584 t:4760 [LOG] > Operating System: Windows 7 (x86) 6.1
2014-04-02T15:35:17.317174 p:7584 t:4760 [LOG] > JVM: Java HotSpot(TM) Client VM, version 1.6.0_24, 32-bit
2014-04-02T15:35:17.317174 p:7584 t:4760 [dbg] Circular buffer set to 25 MB.
2014-04-02T15:35:17.332774 p:7584 t:5664 [LOG] > Failed to load spim.FitPlane$1 java.lang.ClassNotFoundException: org.apache.commons.math.analysis.MultivariateRealFunction
java.lang.NoClassDefFoundError: org/apache/commons/math/analysis/MultivariateRealFunction in Thread[Plugin loading,6,main]
  at java.lang.ClassLoader.defineClass1(Native Method)
  at java.lang.ClassLoader.defineClassCond(ClassLoader.java:632)
  at java.lang.ClassLoader.defineClass(ClassLoader.java:616)
  at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:141)
  at java.net.URLClassLoader.defineClass(URLClassLoader.java:283)
  at java.net.URLClassLoader.access$000(URLClassLoader.java:58)
  at java.net.URLClassLoader$1.run(URLClassLoader.java:197)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.analysis.MultivariateRealFunction
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.ClassLoader.defineClass1(Native Method)
  at java.lang.ClassLoader.defineClassCond(ClassLoader.java:632)
  at java.lang.ClassLoader.defineClass(ClassLoader.java:616)
  at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:141)
  at java.net.URLClassLoader.defineClass(URLClassLoader.java:283)
  at java.net.URLClassLoader.access$000(URLClassLoader.java:58)
  at java.net.URLClassLoader$1.run(URLClassLoader.java:197)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:35:17.332774 p:7584 t:5664 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T15:35:17.332774 p:7584 t:5664 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:35:17.332774 p:7584 t:5664 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:35:17.332774 p:7584 t:5664 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:35:17.332774 p:7584 t:5664 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:35:17.332774 p:7584 t:5664 [LOG] > java.lang.ClassLoader.defineClass1(Native Method)
2014-04-02T15:35:17.332774 p:7584 t:5664 [LOG] > java.lang.ClassLoader.defineClassCond(ClassLoader.java:632)
2014-04-02T15:35:17.332774 p:7584 t:5664 [LOG] > java.lang.ClassLoader.defineClass(ClassLoader.java:616)
2014-04-02T15:35:17.332774 p:7584 t:5664 [LOG] > java.security.SecureClassLoader.defineClass(SecureClassLoader.java:141)
2014-04-02T15:35:17.332774 p:7584 t:5664 [LOG] > java.net.URLClassLoader.defineClass(URLClassLoader.java:283)
2014-04-02T15:35:17.332774 p:7584 t:5664 [LOG] > java.net.URLClassLoader.access$000(URLClassLoader.java:58)
2014-04-02T15:35:17.332774 p:7584 t:5664 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:197)
2014-04-02T15:35:17.332774 p:7584 t:5664 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:35:17.332774 p:7584 t:5664 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:35:17.332774 p:7584 t:5664 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:35:17.332774 p:7584 t:5664 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:35:17.332774 p:7584 t:5664 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T15:35:17.332774 p:7584 t:5664 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T15:35:17.332774 p:7584 t:5664 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T15:35:17.332774 p:7584 t:5664 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T15:35:17.332774 p:7584 t:5664 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T15:35:17.332774 p:7584 t:5664 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:35:17.332774 p:7584 t:5664 [LOG] > Failed to load spim.FitPlane java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
java.lang.NoClassDefFoundError: org/apache/commons/math/geometry/Vector in Thread[Plugin loading,6,main]
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:35:17.332774 p:7584 t:5664 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T15:35:17.332774 p:7584 t:5664 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:35:17.332774 p:7584 t:5664 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:35:17.332774 p:7584 t:5664 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:35:17.332774 p:7584 t:5664 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:35:17.332774 p:7584 t:5664 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T15:35:17.332774 p:7584 t:5664 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T15:35:17.332774 p:7584 t:5664 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T15:35:17.332774 p:7584 t:5664 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T15:35:17.332774 p:7584 t:5664 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T15:35:17.332774 p:7584 t:5664 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:35:17.332774 p:7584 t:5664 [LOG] > Failed to load spim.FitSphere$1 java.lang.ClassNotFoundException: org.apache.commons.math.analysis.MultivariateRealFunction
java.lang.NoClassDefFoundError: org/apache/commons/math/analysis/MultivariateRealFunction in Thread[Plugin loading,6,main]
  at java.lang.ClassLoader.defineClass1(Native Method)
  at java.lang.ClassLoader.defineClassCond(ClassLoader.java:632)
  at java.lang.ClassLoader.defineClass(ClassLoader.java:616)
  at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:141)
  at java.net.URLClassLoader.defineClass(URLClassLoader.java:283)
  at java.net.URLClassLoader.access$000(URLClassLoader.java:58)
  at java.net.URLClassLoader$1.run(URLClassLoader.java:197)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.analysis.MultivariateRealFunction
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.ClassLoader.defineClass1(Native Method)
  at java.lang.ClassLoader.defineClassCond(ClassLoader.java:632)
  at java.lang.ClassLoader.defineClass(ClassLoader.java:616)
  at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:141)
  at java.net.URLClassLoader.defineClass(URLClassLoader.java:283)
  at java.net.URLClassLoader.access$000(URLClassLoader.java:58)
  at java.net.URLClassLoader$1.run(URLClassLoader.java:197)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:35:17.332774 p:7584 t:5664 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T15:35:17.332774 p:7584 t:5664 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:35:17.332774 p:7584 t:5664 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:35:17.332774 p:7584 t:5664 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:35:17.332774 p:7584 t:5664 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:35:17.332774 p:7584 t:5664 [LOG] > java.lang.ClassLoader.defineClass1(Native Method)
2014-04-02T15:35:17.332774 p:7584 t:5664 [LOG] > java.lang.ClassLoader.defineClassCond(ClassLoader.java:632)
2014-04-02T15:35:17.332774 p:7584 t:5664 [LOG] > java.lang.ClassLoader.defineClass(ClassLoader.java:616)
2014-04-02T15:35:17.332774 p:7584 t:5664 [LOG] > java.security.SecureClassLoader.defineClass(SecureClassLoader.java:141)
2014-04-02T15:35:17.332774 p:7584 t:5664 [LOG] > java.net.URLClassLoader.defineClass(URLClassLoader.java:283)
2014-04-02T15:35:17.332774 p:7584 t:5664 [LOG] > java.net.URLClassLoader.access$000(URLClassLoader.java:58)
2014-04-02T15:35:17.332774 p:7584 t:5664 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:197)
2014-04-02T15:35:17.332774 p:7584 t:5664 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:35:17.332774 p:7584 t:5664 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:35:17.332774 p:7584 t:5664 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:35:17.332774 p:7584 t:5664 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:35:17.332774 p:7584 t:5664 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T15:35:17.332774 p:7584 t:5664 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T15:35:17.332774 p:7584 t:5664 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T15:35:17.332774 p:7584 t:5664 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T15:35:17.332774 p:7584 t:5664 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T15:35:17.332774 p:7584 t:5664 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:35:17.332774 p:7584 t:5664 [LOG] > Failed to load spim.FitSphere java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
java.lang.NoClassDefFoundError: org/apache/commons/math/geometry/Vector in Thread[Plugin loading,6,main]
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:35:17.332774 p:7584 t:5664 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T15:35:17.332774 p:7584 t:5664 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:35:17.332774 p:7584 t:5664 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:35:17.332774 p:7584 t:5664 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:35:17.332774 p:7584 t:5664 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:35:17.332774 p:7584 t:5664 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T15:35:17.332774 p:7584 t:5664 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T15:35:17.332774 p:7584 t:5664 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T15:35:17.332774 p:7584 t:5664 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T15:35:17.332774 p:7584 t:5664 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T15:35:17.332774 p:7584 t:5664 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:35:17.348374 p:7584 t:5664 [LOG] > Failed to load spim.PixelSizeCalibrator$GridLineFinder$1 java.lang.ClassNotFoundException: org.apache.commons.math.analysis.MultivariateRealFunction
java.lang.NoClassDefFoundError: org/apache/commons/math/analysis/MultivariateRealFunction in Thread[Plugin loading,6,main]
  at java.lang.ClassLoader.defineClass1(Native Method)
  at java.lang.ClassLoader.defineClassCond(ClassLoader.java:632)
  at java.lang.ClassLoader.defineClass(ClassLoader.java:616)
  at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:141)
  at java.net.URLClassLoader.defineClass(URLClassLoader.java:283)
  at java.net.URLClassLoader.access$000(URLClassLoader.java:58)
  at java.net.URLClassLoader$1.run(URLClassLoader.java:197)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.analysis.MultivariateRealFunction
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.ClassLoader.defineClass1(Native Method)
  at java.lang.ClassLoader.defineClassCond(ClassLoader.java:632)
  at java.lang.ClassLoader.defineClass(ClassLoader.java:616)
  at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:141)
  at java.net.URLClassLoader.defineClass(URLClassLoader.java:283)
  at java.net.URLClassLoader.access$000(URLClassLoader.java:58)
  at java.net.URLClassLoader$1.run(URLClassLoader.java:197)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:35:17.348374 p:7584 t:5664 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T15:35:17.348374 p:7584 t:5664 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:35:17.348374 p:7584 t:5664 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:35:17.348374 p:7584 t:5664 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:35:17.348374 p:7584 t:5664 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:35:17.348374 p:7584 t:5664 [LOG] > java.lang.ClassLoader.defineClass1(Native Method)
2014-04-02T15:35:17.348374 p:7584 t:5664 [LOG] > java.lang.ClassLoader.defineClassCond(ClassLoader.java:632)
2014-04-02T15:35:17.348374 p:7584 t:5664 [LOG] > java.lang.ClassLoader.defineClass(ClassLoader.java:616)
2014-04-02T15:35:17.348374 p:7584 t:5664 [LOG] > java.security.SecureClassLoader.defineClass(SecureClassLoader.java:141)
2014-04-02T15:35:17.348374 p:7584 t:5664 [LOG] > java.net.URLClassLoader.defineClass(URLClassLoader.java:283)
2014-04-02T15:35:17.348374 p:7584 t:5664 [LOG] > java.net.URLClassLoader.access$000(URLClassLoader.java:58)
2014-04-02T15:35:17.348374 p:7584 t:5664 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:197)
2014-04-02T15:35:17.348374 p:7584 t:5664 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:35:17.348374 p:7584 t:5664 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:35:17.348374 p:7584 t:5664 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:35:17.348374 p:7584 t:5664 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:35:17.348374 p:7584 t:5664 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T15:35:17.348374 p:7584 t:5664 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T15:35:17.348374 p:7584 t:5664 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T15:35:17.348374 p:7584 t:5664 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T15:35:17.348374 p:7584 t:5664 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T15:35:17.348374 p:7584 t:5664 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:35:17.348374 p:7584 t:5664 [LOG] > Failed to load spim.PixelSizeCalibrator$GridLineFinder java.lang.ClassNotFoundException: org.apache.commons.math.optimization.direct.AbstractSimplex
java.lang.NoClassDefFoundError: org/apache/commons/math/optimization/direct/AbstractSimplex in Thread[Plugin loading,6,main]
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.optimization.direct.AbstractSimplex
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:35:17.348374 p:7584 t:5664 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T15:35:17.348374 p:7584 t:5664 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:35:17.348374 p:7584 t:5664 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:35:17.348374 p:7584 t:5664 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:35:17.348374 p:7584 t:5664 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:35:17.348374 p:7584 t:5664 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T15:35:17.348374 p:7584 t:5664 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T15:35:17.348374 p:7584 t:5664 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T15:35:17.348374 p:7584 t:5664 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T15:35:17.348374 p:7584 t:5664 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T15:35:17.348374 p:7584 t:5664 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:35:17.379574 p:7584 t:5664 [LOG] > Failed to load spim.progacq.IntensityMeanAntiDrift java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
java.lang.NoClassDefFoundError: org/apache/commons/math/geometry/Vector in Thread[Plugin loading,6,main]
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:35:17.379574 p:7584 t:5664 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T15:35:17.379574 p:7584 t:5664 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:35:17.379574 p:7584 t:5664 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:35:17.379574 p:7584 t:5664 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:35:17.379574 p:7584 t:5664 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:35:17.379574 p:7584 t:5664 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T15:35:17.379574 p:7584 t:5664 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T15:35:17.379574 p:7584 t:5664 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T15:35:17.379574 p:7584 t:5664 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T15:35:17.379574 p:7584 t:5664 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T15:35:17.379574 p:7584 t:5664 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:35:17.395174 p:7584 t:5664 [LOG] > Failed to load spim.progacq.ProjDiffAntiDrift$1 java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
java.lang.NoClassDefFoundError: org/apache/commons/math/geometry/Vector in Thread[Plugin loading,6,main]
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:35:17.395174 p:7584 t:5664 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T15:35:17.395174 p:7584 t:5664 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:35:17.395174 p:7584 t:5664 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:35:17.395174 p:7584 t:5664 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:35:17.395174 p:7584 t:5664 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:35:17.395174 p:7584 t:5664 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T15:35:17.395174 p:7584 t:5664 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T15:35:17.395174 p:7584 t:5664 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T15:35:17.395174 p:7584 t:5664 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T15:35:17.395174 p:7584 t:5664 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T15:35:17.395174 p:7584 t:5664 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:35:17.395174 p:7584 t:5664 [LOG] > Failed to load spim.progacq.ProjDiffAntiDrift$AdjusterGUI java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
java.lang.NoClassDefFoundError: org/apache/commons/math/geometry/Vector in Thread[Plugin loading,6,main]
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:35:17.395174 p:7584 t:5664 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T15:35:17.395174 p:7584 t:5664 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:35:17.395174 p:7584 t:5664 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:35:17.395174 p:7584 t:5664 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:35:17.395174 p:7584 t:5664 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:35:17.395174 p:7584 t:5664 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T15:35:17.395174 p:7584 t:5664 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T15:35:17.395174 p:7584 t:5664 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T15:35:17.395174 p:7584 t:5664 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T15:35:17.395174 p:7584 t:5664 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T15:35:17.395174 p:7584 t:5664 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:35:17.395174 p:7584 t:5664 [LOG] > Failed to load spim.progacq.ProjDiffAntiDrift java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
java.lang.NoClassDefFoundError: org/apache/commons/math/geometry/Vector in Thread[Plugin loading,6,main]
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:35:17.395174 p:7584 t:5664 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T15:35:17.395174 p:7584 t:5664 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:35:17.395174 p:7584 t:5664 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:35:17.395174 p:7584 t:5664 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:35:17.395174 p:7584 t:5664 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:35:17.395174 p:7584 t:5664 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T15:35:17.395174 p:7584 t:5664 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T15:35:17.395174 p:7584 t:5664 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T15:35:17.395174 p:7584 t:5664 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T15:35:17.395174 p:7584 t:5664 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T15:35:17.395174 p:7584 t:5664 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:35:17.441975 p:7584 t:5664 [LOG] > Failed to load spim.SPIMAcquisition java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
java.lang.NoClassDefFoundError: org/apache/commons/math/geometry/Vector in Thread[Plugin loading,6,main]
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:35:17.441975 p:7584 t:5664 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T15:35:17.441975 p:7584 t:5664 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:35:17.441975 p:7584 t:5664 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:35:17.441975 p:7584 t:5664 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:35:17.441975 p:7584 t:5664 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:35:17.441975 p:7584 t:5664 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T15:35:17.441975 p:7584 t:5664 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T15:35:17.441975 p:7584 t:5664 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T15:35:17.441975 p:7584 t:5664 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T15:35:17.441975 p:7584 t:5664 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T15:35:17.441975 p:7584 t:5664 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:35:17.457575 p:7584 t:5664 [LOG] > Failed to load spim.SPIMAutoCalibrator java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
java.lang.NoClassDefFoundError: org/apache/commons/math/geometry/Vector in Thread[Plugin loading,6,main]
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:35:17.457575 p:7584 t:5664 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T15:35:17.457575 p:7584 t:5664 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:35:17.457575 p:7584 t:5664 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:35:17.457575 p:7584 t:5664 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:35:17.457575 p:7584 t:5664 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:35:17.457575 p:7584 t:5664 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T15:35:17.457575 p:7584 t:5664 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T15:35:17.457575 p:7584 t:5664 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T15:35:17.457575 p:7584 t:5664 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T15:35:17.457575 p:7584 t:5664 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T15:35:17.457575 p:7584 t:5664 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:35:17.457575 p:7584 t:5664 [LOG] > Failed to load spim.SPIMManualCalibrator java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
java.lang.NoClassDefFoundError: org/apache/commons/math/geometry/Vector in Thread[Plugin loading,6,main]
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:35:17.457575 p:7584 t:5664 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T15:35:17.457575 p:7584 t:5664 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:35:17.457575 p:7584 t:5664 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:35:17.457575 p:7584 t:5664 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:35:17.457575 p:7584 t:5664 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:35:17.457575 p:7584 t:5664 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T15:35:17.457575 p:7584 t:5664 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T15:35:17.457575 p:7584 t:5664 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T15:35:17.457575 p:7584 t:5664 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T15:35:17.457575 p:7584 t:5664 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T15:35:17.457575 p:7584 t:5664 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:35:17.457575 p:7584 t:5664 [LOG] > #uManager plugins: 94
2014-04-02T15:35:17.457575 p:7584 t:5664 [LOG] > interface found: javax.swing.event.ChangeListener
2014-04-02T15:35:17.457575 p:7584 t:5664 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:35:17.457575 p:7584 t:5664 [LOG] > interface found: java.awt.event.ItemListener
2014-04-02T15:35:17.457575 p:7584 t:5664 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:35:17.457575 p:7584 t:5664 [LOG] > interface found: java.awt.event.ItemListener
2014-04-02T15:35:17.457575 p:7584 t:5664 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:35:17.457575 p:7584 t:5664 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:35:17.457575 p:7584 t:5664 [LOG] > interface found: javax.swing.event.ChangeListener
2014-04-02T15:35:17.457575 p:7584 t:5664 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:35:17.457575 p:7584 t:5664 [LOG] > interface found: java.awt.event.MouseListener
2014-04-02T15:35:17.457575 p:7584 t:5664 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:35:17.457575 p:7584 t:5664 [LOG] > interface found: java.lang.Runnable
2014-04-02T15:35:17.457575 p:7584 t:5664 [LOG] > interface found: spim.progacq.AcqOutputHandler
2014-04-02T15:35:17.457575 p:7584 t:5664 [LOG] > interface found: java.lang.Thread$UncaughtExceptionHandler
2014-04-02T15:35:17.457575 p:7584 t:5664 [LOG] > interface found: spim.progacq.AcqOutputHandler
2014-04-02T15:35:17.457575 p:7584 t:5664 [LOG] > interface found: java.awt.event.MouseListener
2014-04-02T15:35:17.457575 p:7584 t:5664 [LOG] > interface found: spim.progacq.AcqOutputHandler
2014-04-02T15:35:17.457575 p:7584 t:5664 [LOG] > interface found: spim.progacq.AcqOutputHandler
2014-04-02T15:35:17.457575 p:7584 t:5664 [LOG] > interface found: spim.progacq.AntiDrift$Callback
2014-04-02T15:35:17.457575 p:7584 t:5664 [LOG] > interface found: java.lang.Runnable
2014-04-02T15:35:17.457575 p:7584 t:5664 [LOG] > interface found: java.lang.Runnable
2014-04-02T15:35:17.457575 p:7584 t:5664 [LOG] > interface found: javax.swing.event.ChangeListener
2014-04-02T15:35:17.457575 p:7584 t:5664 [LOG] > interface found: java.awt.event.KeyListener
2014-04-02T15:35:17.457575 p:7584 t:5664 [LOG] > interface found: java.lang.Iterable
2014-04-02T15:35:17.457575 p:7584 t:5664 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:35:17.457575 p:7584 t:5664 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:35:17.457575 p:7584 t:5664 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:35:17.457575 p:7584 t:5664 [LOG] > interface found: java.awt.event.ItemListener
2014-04-02T15:35:17.457575 p:7584 t:5664 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:35:17.457575 p:7584 t:5664 [LOG] > interface found: java.awt.event.ItemListener
2014-04-02T15:35:17.457575 p:7584 t:5664 [LOG] > interface found: java.awt.event.ItemListener
2014-04-02T15:35:17.457575 p:7584 t:5664 [LOG] > interface found: java.awt.event.ItemListener
2014-04-02T15:35:17.457575 p:7584 t:5664 [LOG] > interface found: java.awt.event.ItemListener
2014-04-02T15:35:17.457575 p:7584 t:5664 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:35:17.457575 p:7584 t:5664 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:35:17.457575 p:7584 t:5664 [LOG] > interface found: java.util.Comparator
2014-04-02T15:35:17.457575 p:7584 t:5664 [LOG] > interface found: spim.progacq.AntiDrift$Factory
2014-04-02T15:35:17.457575 p:7584 t:5664 [LOG] > interface found: spim.progacq.AntiDrift$Factory
2014-04-02T15:35:17.457575 p:7584 t:5664 [LOG] > interface found: spim.progacq.AntiDrift$Factory
2014-04-02T15:35:17.457575 p:7584 t:5664 [LOG] > interface found: spim.progacq.ProgrammaticAcquisitor$AcqProgressCallback
2014-04-02T15:35:17.457575 p:7584 t:5664 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:35:17.457575 p:7584 t:5664 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:35:17.457575 p:7584 t:5664 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:35:17.457575 p:7584 t:5664 [LOG] > interface found: spim.SPIMAutoCalibrator$RunnableWRet
2014-04-02T15:35:17.457575 p:7584 t:5664 [LOG] > interface found: java.lang.Runnable
2014-04-02T15:35:17.473175 p:7584 t:5664 [LOG] > Attempting to install autofocus plugin Autofocus
2014-04-02T15:35:17.473175 p:7584 t:5664 [LOG] > Attempting to install autofocus plugin AutofocusDuo
2014-04-02T15:35:17.473175 p:7584 t:5664 [LOG] > Attempting to install autofocus plugin AutofocusTB
2014-04-02T15:35:17.473175 p:7584 t:5664 [LOG] > Attempting to install autofocus plugin OughtaFocus
2014-04-02T15:35:19.360778 p:7584 t:4760 [dbg] Will set property: "Core"-"Initialize" = "0"
2014-04-02T15:35:19.360778 p:7584 t:4760 [LOG] All devices unloaded.
2014-04-02T15:35:19.360778 p:7584 t:4760 [dbg] > Notification for Device: Core Property: Initialize changed to value: 0
2014-04-02T15:35:19.360778 p:7584 t:4760 [dbg] Did set property: "Core"-"Initialize" = "0"
2014-04-02T15:35:19.360778 p:7584 t:4760 [LOG] Device COM3 loaded from SerialManager and labeled as COM3
2014-04-02T15:35:19.376378 p:7584 t:4760 [LOG] Error occurred. Device MMCore::loadDevice. Failed to load device adapter "Cobolt" from "C:\Users\User\Desktop\OpenSPIM.app\mm\win32\mmgr_dal_Cobolt.dll"
2014-04-02T15:35:19.376378 p:7584 t:4760 [LOG] Device HamamatsuHam_DCAM loaded from HamamatsuHam and labeled as OrcaFlash
2014-04-02T15:35:19.719579 p:7584 t:4760 [LOG] Device Picard Twister loaded from PicardStage and labeled as Picard Twister
2014-04-02T15:35:19.719579 p:7584 t:4760 [LOG] Device Picard Z Stage loaded from PicardStage and labeled as Picard Z Stage
2014-04-02T15:35:19.719579 p:7584 t:4760 [LOG] Device Picard XY Stage loaded from PicardStage and labeled as Picard XY Stage
2014-04-02T15:35:19.719579 p:7584 t:4760 [dbg] Will set property: "Cobolt"-"Max Power" = "60.0000"
2014-04-02T15:35:19.719579 p:7584 t:4760 [dbg] Will set property: "Cobolt"-"Port" = "COM3"
2014-04-02T15:35:19.719579 p:7584 t:4760 [dbg] Will set property: "Picard Twister"-"Serial Number" = "37"
2014-04-02T15:35:19.719579 p:7584 t:4760 [LOG] Device Picard Twister message: Could not initialize twister 37 (error code 1)
2014-04-02T15:35:19.719579 p:7584 t:4760 [LOG] Error occurred. Device Picard Twister. Error in device Picard Twister: Could not initialize twister. (Error code: 1)
2014-04-02T15:35:19.719579 p:7584 t:4760 [dbg] Will set property: "Picard Z Stage"-"Serial Number" = "140"
2014-04-02T15:35:19.719579 p:7584 t:4760 [LOG] Device Picard Z Stage message: Could not initialize motor 140 (error code 1)
2014-04-02T15:35:19.719579 p:7584 t:4760 [LOG] Error occurred. Device Picard Z Stage. Error in device Picard Z Stage: Could not initialize motor (Z stage). (Error code: 1)
2014-04-02T15:35:19.719579 p:7584 t:4760 [dbg] Will set property: "Picard XY Stage"-"Serial Number (X)" = "139"
2014-04-02T15:35:19.719579 p:7584 t:4760 [LOG] Device Picard XY Stage message: Could not initialize motor 139 (error code 1)
2014-04-02T15:35:19.719579 p:7584 t:4760 [LOG] Error occurred. Device Picard XY Stage. Error in device Picard XY Stage: Could not initialize motor (X stage). (Error code: 1347)
2014-04-02T15:35:19.719579 p:7584 t:4760 [dbg] Will set property: "Picard XY Stage"-"Serial Number (Y)" = "141"
2014-04-02T15:35:19.719579 p:7584 t:4760 [LOG] Device Picard XY Stage message: Could not initialize motor 141 (error code 1)
2014-04-02T15:35:19.719579 p:7584 t:4760 [LOG] Error occurred. Device Picard XY Stage. Error in device Picard XY Stage: Could not initialize motor (Y stage). (Error code: 1348)
2014-04-02T15:35:19.719579 p:7584 t:4760 [dbg] Will set property: "Picard XY Stage"-"X-Max" = "8000"
2014-04-02T15:35:19.719579 p:7584 t:4760 [dbg] Did set property: "Picard XY Stage"-"X-Max" = "8000"
2014-04-02T15:35:19.719579 p:7584 t:4760 [dbg] Will set property: "Picard XY Stage"-"X-Min" = "1"
2014-04-02T15:35:19.719579 p:7584 t:4760 [dbg] Did set property: "Picard XY Stage"-"X-Min" = "1"
2014-04-02T15:35:19.719579 p:7584 t:4760 [dbg] Will set property: "Picard XY Stage"-"Y-Max" = "8000"
2014-04-02T15:35:19.719579 p:7584 t:4760 [dbg] Did set property: "Picard XY Stage"-"Y-Max" = "8000"
2014-04-02T15:35:19.719579 p:7584 t:4760 [dbg] Will set property: "Picard XY Stage"-"Y-Min" = "1"
2014-04-02T15:35:19.719579 p:7584 t:4760 [dbg] Did set property: "Picard XY Stage"-"Y-Min" = "1"
2014-04-02T15:35:19.719579 p:7584 t:4760 [dbg] Will set property: "COM3"-"AnswerTimeout" = "500.0000"
2014-04-02T15:35:19.719579 p:7584 t:4760 [dbg] Did set property: "COM3"-"AnswerTimeout" = "500.0000"
2014-04-02T15:35:19.719579 p:7584 t:4760 [dbg] Will set property: "COM3"-"BaudRate" = "115200"
2014-04-02T15:35:19.719579 p:7584 t:4760 [dbg] Did set property: "COM3"-"BaudRate" = "115200"
2014-04-02T15:35:19.719579 p:7584 t:4760 [dbg] Will set property: "COM3"-"DelayBetweenCharsMs" = "0.0000"
2014-04-02T15:35:19.719579 p:7584 t:4760 [dbg] Did set property: "COM3"-"DelayBetweenCharsMs" = "0.0000"
2014-04-02T15:35:19.719579 p:7584 t:4760 [dbg] Will set property: "COM3"-"Handshaking" = "Off"
2014-04-02T15:35:19.719579 p:7584 t:4760 [dbg] Did set property: "COM3"-"Handshaking" = "Off"
2014-04-02T15:35:19.719579 p:7584 t:4760 [dbg] Will set property: "COM3"-"Parity" = "None"
2014-04-02T15:35:19.719579 p:7584 t:4760 [dbg] Did set property: "COM3"-"Parity" = "None"
2014-04-02T15:35:19.719579 p:7584 t:4760 [dbg] Will set property: "COM3"-"StopBits" = "1"
2014-04-02T15:35:19.719579 p:7584 t:4760 [dbg] Did set property: "COM3"-"StopBits" = "1"
2014-04-02T15:35:19.719579 p:7584 t:4760 [dbg] Will set property: "COM3"-"Verbose" = "1"
2014-04-02T15:35:19.719579 p:7584 t:4760 [dbg] Did set property: "COM3"-"Verbose" = "1"
2014-04-02T15:35:19.719579 p:7584 t:4760 [dbg] Will set property: "Core"-"Initialize" = "1"
2014-04-02T15:35:19.719579 p:7584 t:4760 [LOG] Starting initialization sequence for 5 devices...
2014-04-02T15:35:19.719579 p:7584 t:4760 [LOG] Device COM3 message: The system cannot find the file specified
2014-04-02T15:35:19.719579 p:7584 t:4760 [LOG] Error occurred. Device COM3. Error in device COM3: Unknown error in the device. 
, file MMCore.cpp, line 885
2014-04-02T15:35:19.719579 p:7584 t:4760 [dbg] Will set property: "Core"-"Camera" = "OrcaFlash"
2014-04-02T15:35:19.719579 p:7584 t:4760 [dbg] Will set property: "Core"-"Shutter" = "Cobolt"
2014-04-02T15:35:19.719579 p:7584 t:4760 [dbg] Will set property: "Core"-"Focus" = "Picard Z Stage"
2014-04-02T15:35:19.719579 p:7584 t:4760 [dbg] Will set property: "Core"-"AutoShutter" = "1"
2014-04-02T15:35:19.719579 p:7584 t:4760 [LOG] Auto shutter ON.
2014-04-02T15:35:19.719579 p:7584 t:4760 [dbg] > Notification for Device: Core Property: AutoShutter changed to value: 1
2014-04-02T15:35:19.719579 p:7584 t:4760 [dbg] Did set property: "Core"-"AutoShutter" = "1"
2014-04-02T15:35:19.719579 p:7584 t:4760 [LOG] > 
java.lang.Exception: Line 8: Device,Cobolt,Cobolt,Cobolt
Failed to load device adapter "Cobolt" from "C:\Users\User\Desktop\OpenSPIM.app\mm\win32\mmgr_dal_Cobolt.dll"

Line 15: Property,Cobolt,Max Power,60.0000
No device with label "Cobolt"

Line 16: Property,Cobolt,Port,COM3
No device with label "Cobolt"

Line 17: Property,Picard Twister,Serial Number,37
Error in device Picard Twister: Could not initialize twister. (Error code: 1)

Line 18: Property,Picard Z Stage,Serial Number,140
Error in device Picard Z Stage: Could not initialize motor (Z stage). (Error code: 1)

Line 19: Property,Picard XY Stage,Serial Number (X),139
Error in device Picard XY Stage: Could not initialize motor (X stage). (Error code: 1347)

Line 20: Property,Picard XY Stage,Serial Number (Y),141
Error in device Picard XY Stage: Could not initialize motor (Y stage). (Error code: 1348)

Line 38: Property,Core,Initialize,1
Error in device COM3: Unknown error in the device. 

Line 43: Property,Core,Camera,OrcaFlash
Cannot set Core property Camera to invalid value "OrcaFlash"

Line 44: Property,Core,Shutter,Cobolt
Cannot set Core property Shutter to invalid value "Cobolt"

Line 45: Property,Core,Focus,Picard Z Stage
Cannot set Core property Focus to invalid value "Picard Z Stage"

 in Thread[AWT-EventQueue-0,6,main]
  at mmcorej.MMCoreJJNI.CMMCore_loadSystemConfiguration(Native Method)
  at mmcorej.CMMCore.loadSystemConfiguration(CMMCore.java:341)
  at org.micromanager.MMStudioMainFrame.loadSystemConfiguration(MMStudioMainFrame.java:3289)
  at org.micromanager.MMStudioMainFrame.access$2400(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48.windowOpened(MMStudioMainFrame.java:1514)
  at java.awt.AWTEventMulticaster.windowOpened(AWTEventMulticaster.java:322)
  at java.awt.Window.processWindowEvent(Window.java:1862)
  at javax.swing.JFrame.processWindowEvent(JFrame.java:274)
  at java.awt.Window.processEvent(Window.java:1823)
  at java.awt.Component.dispatchEventImpl(Component.java:4652)
  at java.awt.Container.dispatchEventImpl(Container.java:2099)
  at java.awt.Window.dispatchEventImpl(Window.java:2478)
  at java.awt.Component.dispatchEvent(Component.java:4482)
  at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:644)
  at java.awt.EventQueue.access$000(EventQueue.java:85)
  at java.awt.EventQueue$1.run(EventQueue.java:603)
  at java.awt.EventQueue$1.run(EventQueue.java:601)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
  at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
  at java.awt.EventQueue$2.run(EventQueue.java:617)
  at java.awt.EventQueue$2.run(EventQueue.java:615)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
  at java.awt.EventQueue.dispatchEvent(EventQueue.java:614)
  at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269)
  at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184)
  at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174)
  at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169)
  at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161)
  at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
2014-04-02T15:35:21.841182 p:7584 t:4760 [LOG] System state cache updated.
2014-04-02T15:35:21.841182 p:7584 t:4760 [LOG] > Startup script file (C:\Users\User\Desktop\OpenSPIM.app/MMStartup.bsh) not present.
2014-04-02T15:35:32.995202 p:7584 t:4760 [LOG] > [UI] JButton "Hide Details" clicked in ProgressDialog.
2014-04-02T15:35:47.830828 p:7584 t:4760 [LOG] > [UI] FileTable clicked in UpdaterFrame.
2014-04-02T15:35:49.578031 p:7584 t:4760 [LOG] > [UI] JButton "Apply changes" clicked in UpdaterFrame.
2014-04-02T15:38:24.781172 p:7224 t:4712 [LOG] -------->>
2014-04-02T15:38:24.781172 p:7224 t:4712 [LOG] Core session started by User on OPENSPIM01
2014-04-02T15:38:24.781172 p:7224 t:4712 [LOG] Debug logging disabled
2014-04-02T15:38:24.781172 p:7224 t:4712 [LOG] Debug logging enabled
2014-04-02T15:38:24.781172 p:7224 t:4712 [LOG] > MM Studio version: 1.4.x dev
2014-04-02T15:38:24.781172 p:7224 t:4712 [LOG] > MMCore version 2.3.2
2014-04-02T15:38:24.781172 p:7224 t:4712 [LOG] > Device API version 57, Module API version 8
2014-04-02T15:38:24.781172 p:7224 t:4712 [LOG] > Operating System: Windows 7 (x86) 6.1
2014-04-02T15:38:24.781172 p:7224 t:4712 [LOG] > JVM: Java HotSpot(TM) Client VM, version 1.6.0_24, 32-bit
2014-04-02T15:38:24.781172 p:7224 t:4712 [dbg] Circular buffer set to 25 MB.
2014-04-02T15:38:24.796772 p:7224 t:6940 [LOG] > Failed to load spim.FitPlane$1 java.lang.ClassNotFoundException: org.apache.commons.math.analysis.MultivariateRealFunction
java.lang.NoClassDefFoundError: org/apache/commons/math/analysis/MultivariateRealFunction in Thread[Plugin loading,6,main]
  at java.lang.ClassLoader.defineClass1(Native Method)
  at java.lang.ClassLoader.defineClassCond(ClassLoader.java:632)
  at java.lang.ClassLoader.defineClass(ClassLoader.java:616)
  at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:141)
  at java.net.URLClassLoader.defineClass(URLClassLoader.java:283)
  at java.net.URLClassLoader.access$000(URLClassLoader.java:58)
  at java.net.URLClassLoader$1.run(URLClassLoader.java:197)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.analysis.MultivariateRealFunction
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.ClassLoader.defineClass1(Native Method)
  at java.lang.ClassLoader.defineClassCond(ClassLoader.java:632)
  at java.lang.ClassLoader.defineClass(ClassLoader.java:616)
  at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:141)
  at java.net.URLClassLoader.defineClass(URLClassLoader.java:283)
  at java.net.URLClassLoader.access$000(URLClassLoader.java:58)
  at java.net.URLClassLoader$1.run(URLClassLoader.java:197)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:38:24.796772 p:7224 t:6940 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T15:38:24.796772 p:7224 t:6940 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:38:24.796772 p:7224 t:6940 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:38:24.796772 p:7224 t:6940 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:38:24.796772 p:7224 t:6940 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:38:24.796772 p:7224 t:6940 [LOG] > java.lang.ClassLoader.defineClass1(Native Method)
2014-04-02T15:38:24.796772 p:7224 t:6940 [LOG] > java.lang.ClassLoader.defineClassCond(ClassLoader.java:632)
2014-04-02T15:38:24.796772 p:7224 t:6940 [LOG] > java.lang.ClassLoader.defineClass(ClassLoader.java:616)
2014-04-02T15:38:24.796772 p:7224 t:6940 [LOG] > java.security.SecureClassLoader.defineClass(SecureClassLoader.java:141)
2014-04-02T15:38:24.796772 p:7224 t:6940 [LOG] > java.net.URLClassLoader.defineClass(URLClassLoader.java:283)
2014-04-02T15:38:24.796772 p:7224 t:6940 [LOG] > java.net.URLClassLoader.access$000(URLClassLoader.java:58)
2014-04-02T15:38:24.796772 p:7224 t:6940 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:197)
2014-04-02T15:38:24.796772 p:7224 t:6940 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:38:24.796772 p:7224 t:6940 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:38:24.796772 p:7224 t:6940 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:38:24.796772 p:7224 t:6940 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:38:24.796772 p:7224 t:6940 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T15:38:24.796772 p:7224 t:6940 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T15:38:24.796772 p:7224 t:6940 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T15:38:24.796772 p:7224 t:6940 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T15:38:24.796772 p:7224 t:6940 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T15:38:24.796772 p:7224 t:6940 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:38:24.796772 p:7224 t:6940 [LOG] > Failed to load spim.FitPlane java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
java.lang.NoClassDefFoundError: org/apache/commons/math/geometry/Vector in Thread[Plugin loading,6,main]
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:38:24.796772 p:7224 t:6940 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T15:38:24.796772 p:7224 t:6940 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:38:24.796772 p:7224 t:6940 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:38:24.796772 p:7224 t:6940 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:38:24.796772 p:7224 t:6940 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:38:24.796772 p:7224 t:6940 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T15:38:24.796772 p:7224 t:6940 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T15:38:24.796772 p:7224 t:6940 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T15:38:24.796772 p:7224 t:6940 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T15:38:24.796772 p:7224 t:6940 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T15:38:24.796772 p:7224 t:6940 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:38:24.796772 p:7224 t:6940 [LOG] > Failed to load spim.FitSphere$1 java.lang.ClassNotFoundException: org.apache.commons.math.analysis.MultivariateRealFunction
java.lang.NoClassDefFoundError: org/apache/commons/math/analysis/MultivariateRealFunction in Thread[Plugin loading,6,main]
  at java.lang.ClassLoader.defineClass1(Native Method)
  at java.lang.ClassLoader.defineClassCond(ClassLoader.java:632)
  at java.lang.ClassLoader.defineClass(ClassLoader.java:616)
  at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:141)
  at java.net.URLClassLoader.defineClass(URLClassLoader.java:283)
  at java.net.URLClassLoader.access$000(URLClassLoader.java:58)
  at java.net.URLClassLoader$1.run(URLClassLoader.java:197)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.analysis.MultivariateRealFunction
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.ClassLoader.defineClass1(Native Method)
  at java.lang.ClassLoader.defineClassCond(ClassLoader.java:632)
  at java.lang.ClassLoader.defineClass(ClassLoader.java:616)
  at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:141)
  at java.net.URLClassLoader.defineClass(URLClassLoader.java:283)
  at java.net.URLClassLoader.access$000(URLClassLoader.java:58)
  at java.net.URLClassLoader$1.run(URLClassLoader.java:197)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:38:24.796772 p:7224 t:6940 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T15:38:24.796772 p:7224 t:6940 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:38:24.796772 p:7224 t:6940 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:38:24.796772 p:7224 t:6940 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:38:24.796772 p:7224 t:6940 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:38:24.796772 p:7224 t:6940 [LOG] > java.lang.ClassLoader.defineClass1(Native Method)
2014-04-02T15:38:24.796772 p:7224 t:6940 [LOG] > java.lang.ClassLoader.defineClassCond(ClassLoader.java:632)
2014-04-02T15:38:24.796772 p:7224 t:6940 [LOG] > java.lang.ClassLoader.defineClass(ClassLoader.java:616)
2014-04-02T15:38:24.796772 p:7224 t:6940 [LOG] > java.security.SecureClassLoader.defineClass(SecureClassLoader.java:141)
2014-04-02T15:38:24.796772 p:7224 t:6940 [LOG] > java.net.URLClassLoader.defineClass(URLClassLoader.java:283)
2014-04-02T15:38:24.796772 p:7224 t:6940 [LOG] > java.net.URLClassLoader.access$000(URLClassLoader.java:58)
2014-04-02T15:38:24.796772 p:7224 t:6940 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:197)
2014-04-02T15:38:24.796772 p:7224 t:6940 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:38:24.796772 p:7224 t:6940 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:38:24.796772 p:7224 t:6940 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:38:24.796772 p:7224 t:6940 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:38:24.796772 p:7224 t:6940 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T15:38:24.796772 p:7224 t:6940 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T15:38:24.796772 p:7224 t:6940 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T15:38:24.796772 p:7224 t:6940 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T15:38:24.796772 p:7224 t:6940 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T15:38:24.796772 p:7224 t:6940 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:38:24.796772 p:7224 t:6940 [LOG] > Failed to load spim.FitSphere java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
java.lang.NoClassDefFoundError: org/apache/commons/math/geometry/Vector in Thread[Plugin loading,6,main]
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:38:24.796772 p:7224 t:6940 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T15:38:24.796772 p:7224 t:6940 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:38:24.796772 p:7224 t:6940 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:38:24.796772 p:7224 t:6940 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:38:24.796772 p:7224 t:6940 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:38:24.796772 p:7224 t:6940 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T15:38:24.796772 p:7224 t:6940 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T15:38:24.796772 p:7224 t:6940 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T15:38:24.796772 p:7224 t:6940 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T15:38:24.796772 p:7224 t:6940 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T15:38:24.796772 p:7224 t:6940 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:38:24.812372 p:7224 t:6940 [LOG] > Failed to load spim.PixelSizeCalibrator$GridLineFinder$1 java.lang.ClassNotFoundException: org.apache.commons.math.analysis.MultivariateRealFunction
java.lang.NoClassDefFoundError: org/apache/commons/math/analysis/MultivariateRealFunction in Thread[Plugin loading,6,main]
  at java.lang.ClassLoader.defineClass1(Native Method)
  at java.lang.ClassLoader.defineClassCond(ClassLoader.java:632)
  at java.lang.ClassLoader.defineClass(ClassLoader.java:616)
  at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:141)
  at java.net.URLClassLoader.defineClass(URLClassLoader.java:283)
  at java.net.URLClassLoader.access$000(URLClassLoader.java:58)
  at java.net.URLClassLoader$1.run(URLClassLoader.java:197)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.analysis.MultivariateRealFunction
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.ClassLoader.defineClass1(Native Method)
  at java.lang.ClassLoader.defineClassCond(ClassLoader.java:632)
  at java.lang.ClassLoader.defineClass(ClassLoader.java:616)
  at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:141)
  at java.net.URLClassLoader.defineClass(URLClassLoader.java:283)
  at java.net.URLClassLoader.access$000(URLClassLoader.java:58)
  at java.net.URLClassLoader$1.run(URLClassLoader.java:197)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:38:24.812372 p:7224 t:6940 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T15:38:24.812372 p:7224 t:6940 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:38:24.812372 p:7224 t:6940 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:38:24.812372 p:7224 t:6940 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:38:24.812372 p:7224 t:6940 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:38:24.812372 p:7224 t:6940 [LOG] > java.lang.ClassLoader.defineClass1(Native Method)
2014-04-02T15:38:24.812372 p:7224 t:6940 [LOG] > java.lang.ClassLoader.defineClassCond(ClassLoader.java:632)
2014-04-02T15:38:24.812372 p:7224 t:6940 [LOG] > java.lang.ClassLoader.defineClass(ClassLoader.java:616)
2014-04-02T15:38:24.812372 p:7224 t:6940 [LOG] > java.security.SecureClassLoader.defineClass(SecureClassLoader.java:141)
2014-04-02T15:38:24.812372 p:7224 t:6940 [LOG] > java.net.URLClassLoader.defineClass(URLClassLoader.java:283)
2014-04-02T15:38:24.812372 p:7224 t:6940 [LOG] > java.net.URLClassLoader.access$000(URLClassLoader.java:58)
2014-04-02T15:38:24.812372 p:7224 t:6940 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:197)
2014-04-02T15:38:24.812372 p:7224 t:6940 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:38:24.812372 p:7224 t:6940 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:38:24.812372 p:7224 t:6940 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:38:24.812372 p:7224 t:6940 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:38:24.812372 p:7224 t:6940 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T15:38:24.812372 p:7224 t:6940 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T15:38:24.812372 p:7224 t:6940 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T15:38:24.812372 p:7224 t:6940 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T15:38:24.812372 p:7224 t:6940 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T15:38:24.812372 p:7224 t:6940 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:38:24.812372 p:7224 t:6940 [LOG] > Failed to load spim.PixelSizeCalibrator$GridLineFinder java.lang.ClassNotFoundException: org.apache.commons.math.optimization.direct.AbstractSimplex
java.lang.NoClassDefFoundError: org/apache/commons/math/optimization/direct/AbstractSimplex in Thread[Plugin loading,6,main]
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.optimization.direct.AbstractSimplex
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:38:24.812372 p:7224 t:6940 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T15:38:24.812372 p:7224 t:6940 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:38:24.812372 p:7224 t:6940 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:38:24.812372 p:7224 t:6940 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:38:24.812372 p:7224 t:6940 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:38:24.812372 p:7224 t:6940 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T15:38:24.812372 p:7224 t:6940 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T15:38:24.812372 p:7224 t:6940 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T15:38:24.812372 p:7224 t:6940 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T15:38:24.812372 p:7224 t:6940 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T15:38:24.812372 p:7224 t:6940 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:38:24.843572 p:7224 t:6940 [LOG] > Failed to load spim.progacq.IntensityMeanAntiDrift java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
java.lang.NoClassDefFoundError: org/apache/commons/math/geometry/Vector in Thread[Plugin loading,6,main]
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:38:24.843572 p:7224 t:6940 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T15:38:24.843572 p:7224 t:6940 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:38:24.843572 p:7224 t:6940 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:38:24.843572 p:7224 t:6940 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:38:24.843572 p:7224 t:6940 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:38:24.843572 p:7224 t:6940 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T15:38:24.843572 p:7224 t:6940 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T15:38:24.843572 p:7224 t:6940 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T15:38:24.843572 p:7224 t:6940 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T15:38:24.843572 p:7224 t:6940 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T15:38:24.843572 p:7224 t:6940 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:38:24.843572 p:7224 t:6940 [LOG] > Failed to load spim.progacq.ProjDiffAntiDrift$1 java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
java.lang.NoClassDefFoundError: org/apache/commons/math/geometry/Vector in Thread[Plugin loading,6,main]
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:38:24.843572 p:7224 t:6940 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T15:38:24.843572 p:7224 t:6940 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:38:24.843572 p:7224 t:6940 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:38:24.843572 p:7224 t:6940 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:38:24.843572 p:7224 t:6940 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:38:24.843572 p:7224 t:6940 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T15:38:24.843572 p:7224 t:6940 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T15:38:24.859172 p:7224 t:6940 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T15:38:24.859172 p:7224 t:6940 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T15:38:24.859172 p:7224 t:6940 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T15:38:24.859172 p:7224 t:6940 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:38:24.859172 p:7224 t:6940 [LOG] > Failed to load spim.progacq.ProjDiffAntiDrift$AdjusterGUI java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
java.lang.NoClassDefFoundError: org/apache/commons/math/geometry/Vector in Thread[Plugin loading,6,main]
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:38:24.859172 p:7224 t:6940 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T15:38:24.859172 p:7224 t:6940 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:38:24.859172 p:7224 t:6940 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:38:24.859172 p:7224 t:6940 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:38:24.859172 p:7224 t:6940 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:38:24.859172 p:7224 t:6940 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T15:38:24.859172 p:7224 t:6940 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T15:38:24.859172 p:7224 t:6940 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T15:38:24.859172 p:7224 t:6940 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T15:38:24.859172 p:7224 t:6940 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T15:38:24.859172 p:7224 t:6940 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:38:24.859172 p:7224 t:6940 [LOG] > Failed to load spim.progacq.ProjDiffAntiDrift java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
java.lang.NoClassDefFoundError: org/apache/commons/math/geometry/Vector in Thread[Plugin loading,6,main]
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:38:24.859172 p:7224 t:6940 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T15:38:24.859172 p:7224 t:6940 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:38:24.859172 p:7224 t:6940 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:38:24.859172 p:7224 t:6940 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:38:24.859172 p:7224 t:6940 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:38:24.859172 p:7224 t:6940 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T15:38:24.859172 p:7224 t:6940 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T15:38:24.859172 p:7224 t:6940 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T15:38:24.859172 p:7224 t:6940 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T15:38:24.859172 p:7224 t:6940 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T15:38:24.859172 p:7224 t:6940 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:38:24.921572 p:7224 t:6940 [LOG] > Failed to load spim.SPIMAcquisition java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
java.lang.NoClassDefFoundError: org/apache/commons/math/geometry/Vector in Thread[Plugin loading,6,main]
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:38:24.921572 p:7224 t:6940 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T15:38:24.921572 p:7224 t:6940 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:38:24.921572 p:7224 t:6940 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:38:24.921572 p:7224 t:6940 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:38:24.921572 p:7224 t:6940 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:38:24.921572 p:7224 t:6940 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T15:38:24.921572 p:7224 t:6940 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T15:38:24.921572 p:7224 t:6940 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T15:38:24.921572 p:7224 t:6940 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T15:38:24.921572 p:7224 t:6940 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T15:38:24.921572 p:7224 t:6940 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:38:24.921572 p:7224 t:6940 [LOG] > Failed to load spim.SPIMAutoCalibrator java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
java.lang.NoClassDefFoundError: org/apache/commons/math/geometry/Vector in Thread[Plugin loading,6,main]
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:38:24.921572 p:7224 t:6940 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T15:38:24.921572 p:7224 t:6940 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:38:24.921572 p:7224 t:6940 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:38:24.921572 p:7224 t:6940 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:38:24.921572 p:7224 t:6940 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:38:24.921572 p:7224 t:6940 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T15:38:24.921572 p:7224 t:6940 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T15:38:24.921572 p:7224 t:6940 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T15:38:24.921572 p:7224 t:6940 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T15:38:24.921572 p:7224 t:6940 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T15:38:24.921572 p:7224 t:6940 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:38:24.921572 p:7224 t:6940 [LOG] > Failed to load spim.SPIMManualCalibrator java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
java.lang.NoClassDefFoundError: org/apache/commons/math/geometry/Vector in Thread[Plugin loading,6,main]
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:38:24.921572 p:7224 t:6940 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T15:38:24.921572 p:7224 t:6940 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:38:24.921572 p:7224 t:6940 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:38:24.921572 p:7224 t:6940 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:38:24.921572 p:7224 t:6940 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:38:24.921572 p:7224 t:6940 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T15:38:24.921572 p:7224 t:6940 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T15:38:24.921572 p:7224 t:6940 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T15:38:24.921572 p:7224 t:6940 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T15:38:24.921572 p:7224 t:6940 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T15:38:24.921572 p:7224 t:6940 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:38:24.921572 p:7224 t:6940 [LOG] > #uManager plugins: 94
2014-04-02T15:38:24.921572 p:7224 t:6940 [LOG] > interface found: javax.swing.event.ChangeListener
2014-04-02T15:38:24.921572 p:7224 t:6940 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:38:24.921572 p:7224 t:6940 [LOG] > interface found: java.awt.event.ItemListener
2014-04-02T15:38:24.921572 p:7224 t:6940 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:38:24.921572 p:7224 t:6940 [LOG] > interface found: java.awt.event.ItemListener
2014-04-02T15:38:24.921572 p:7224 t:6940 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:38:24.921572 p:7224 t:6940 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:38:24.921572 p:7224 t:6940 [LOG] > interface found: javax.swing.event.ChangeListener
2014-04-02T15:38:24.921572 p:7224 t:6940 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:38:24.921572 p:7224 t:6940 [LOG] > interface found: java.awt.event.MouseListener
2014-04-02T15:38:24.921572 p:7224 t:6940 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:38:24.921572 p:7224 t:6940 [LOG] > interface found: java.lang.Runnable
2014-04-02T15:38:24.921572 p:7224 t:6940 [LOG] > interface found: spim.progacq.AcqOutputHandler
2014-04-02T15:38:24.921572 p:7224 t:6940 [LOG] > interface found: java.lang.Thread$UncaughtExceptionHandler
2014-04-02T15:38:24.921572 p:7224 t:6940 [LOG] > interface found: spim.progacq.AcqOutputHandler
2014-04-02T15:38:24.921572 p:7224 t:6940 [LOG] > interface found: java.awt.event.MouseListener
2014-04-02T15:38:24.921572 p:7224 t:6940 [LOG] > interface found: spim.progacq.AcqOutputHandler
2014-04-02T15:38:24.921572 p:7224 t:6940 [LOG] > interface found: spim.progacq.AcqOutputHandler
2014-04-02T15:38:24.921572 p:7224 t:6940 [LOG] > interface found: spim.progacq.AntiDrift$Callback
2014-04-02T15:38:24.921572 p:7224 t:6940 [LOG] > interface found: java.lang.Runnable
2014-04-02T15:38:24.921572 p:7224 t:6940 [LOG] > interface found: java.lang.Runnable
2014-04-02T15:38:24.921572 p:7224 t:6940 [LOG] > interface found: javax.swing.event.ChangeListener
2014-04-02T15:38:24.921572 p:7224 t:6940 [LOG] > interface found: java.awt.event.KeyListener
2014-04-02T15:38:24.921572 p:7224 t:6940 [LOG] > interface found: java.lang.Iterable
2014-04-02T15:38:24.921572 p:7224 t:6940 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:38:24.921572 p:7224 t:6940 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:38:24.921572 p:7224 t:6940 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:38:24.921572 p:7224 t:6940 [LOG] > interface found: java.awt.event.ItemListener
2014-04-02T15:38:24.921572 p:7224 t:6940 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:38:24.921572 p:7224 t:6940 [LOG] > interface found: java.awt.event.ItemListener
2014-04-02T15:38:24.921572 p:7224 t:6940 [LOG] > interface found: java.awt.event.ItemListener
2014-04-02T15:38:24.921572 p:7224 t:6940 [LOG] > interface found: java.awt.event.ItemListener
2014-04-02T15:38:24.921572 p:7224 t:6940 [LOG] > interface found: java.awt.event.ItemListener
2014-04-02T15:38:24.921572 p:7224 t:6940 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:38:24.921572 p:7224 t:6940 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:38:24.921572 p:7224 t:6940 [LOG] > interface found: java.util.Comparator
2014-04-02T15:38:24.921572 p:7224 t:6940 [LOG] > interface found: spim.progacq.AntiDrift$Factory
2014-04-02T15:38:24.921572 p:7224 t:6940 [LOG] > interface found: spim.progacq.AntiDrift$Factory
2014-04-02T15:38:24.921572 p:7224 t:6940 [LOG] > interface found: spim.progacq.AntiDrift$Factory
2014-04-02T15:38:24.921572 p:7224 t:6940 [LOG] > interface found: spim.progacq.ProgrammaticAcquisitor$AcqProgressCallback
2014-04-02T15:38:24.921572 p:7224 t:6940 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:38:24.921572 p:7224 t:6940 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:38:24.921572 p:7224 t:6940 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:38:24.921572 p:7224 t:6940 [LOG] > interface found: spim.SPIMAutoCalibrator$RunnableWRet
2014-04-02T15:38:24.921572 p:7224 t:6940 [LOG] > interface found: java.lang.Runnable
2014-04-02T15:38:24.937172 p:7224 t:6940 [LOG] > Attempting to install autofocus plugin Autofocus
2014-04-02T15:38:24.937172 p:7224 t:6940 [LOG] > Attempting to install autofocus plugin AutofocusDuo
2014-04-02T15:38:24.937172 p:7224 t:6940 [LOG] > Attempting to install autofocus plugin AutofocusTB
2014-04-02T15:38:24.937172 p:7224 t:6940 [LOG] > Attempting to install autofocus plugin OughtaFocus
2014-04-02T15:38:28.228778 p:7224 t:4712 [dbg] Will set property: "Core"-"Initialize" = "0"
2014-04-02T15:38:28.228778 p:7224 t:4712 [LOG] All devices unloaded.
2014-04-02T15:38:28.228778 p:7224 t:4712 [dbg] > Notification for Device: Core Property: Initialize changed to value: 0
2014-04-02T15:38:28.228778 p:7224 t:4712 [dbg] Did set property: "Core"-"Initialize" = "0"
2014-04-02T15:38:28.228778 p:7224 t:4712 [LOG] Device COM3 loaded from SerialManager and labeled as COM3
2014-04-02T15:38:28.228778 p:7224 t:4712 [LOG] Error occurred. Device MMCore::loadDevice. Failed to load device adapter "Cobolt" from "C:\Users\User\Desktop\OpenSPIM.app\mm\win32\mmgr_dal_Cobolt.dll"
2014-04-02T15:38:28.228778 p:7224 t:4712 [LOG] Device HamamatsuHam_DCAM loaded from HamamatsuHam and labeled as OrcaFlash
2014-04-02T15:38:28.774779 p:7224 t:4712 [LOG] Device Picard Twister loaded from PicardStage and labeled as Picard Twister
2014-04-02T15:38:28.774779 p:7224 t:4712 [LOG] Device Picard Z Stage loaded from PicardStage and labeled as Picard Z Stage
2014-04-02T15:38:28.774779 p:7224 t:4712 [LOG] Device Picard XY Stage loaded from PicardStage and labeled as Picard XY Stage
2014-04-02T15:38:28.774779 p:7224 t:4712 [dbg] Will set property: "Cobolt"-"Max Power" = "60.0000"
2014-04-02T15:38:28.774779 p:7224 t:4712 [dbg] Will set property: "Cobolt"-"Port" = "COM3"
2014-04-02T15:38:28.774779 p:7224 t:4712 [dbg] Will set property: "Picard Twister"-"Serial Number" = "37"
2014-04-02T15:38:28.805979 p:7224 t:4712 [dbg] Did set property: "Picard Twister"-"Serial Number" = "37"
2014-04-02T15:38:28.805979 p:7224 t:4712 [dbg] Will set property: "Picard Z Stage"-"Serial Number" = "140"
2014-04-02T15:38:28.821579 p:7224 t:4712 [dbg] Did set property: "Picard Z Stage"-"Serial Number" = "140"
2014-04-02T15:38:28.821579 p:7224 t:4712 [dbg] Will set property: "Picard XY Stage"-"Serial Number (X)" = "139"
2014-04-02T15:38:28.821579 p:7224 t:4712 [dbg] Did set property: "Picard XY Stage"-"Serial Number (X)" = "139"
2014-04-02T15:38:28.821579 p:7224 t:4712 [dbg] Will set property: "Picard XY Stage"-"Serial Number (Y)" = "141"
2014-04-02T15:38:28.852779 p:7224 t:4712 [dbg] Did set property: "Picard XY Stage"-"Serial Number (Y)" = "141"
2014-04-02T15:38:28.852779 p:7224 t:4712 [dbg] Will set property: "Picard XY Stage"-"X-Max" = "8000"
2014-04-02T15:38:28.852779 p:7224 t:4712 [dbg] Did set property: "Picard XY Stage"-"X-Max" = "8000"
2014-04-02T15:38:28.852779 p:7224 t:4712 [dbg] Will set property: "Picard XY Stage"-"X-Min" = "1"
2014-04-02T15:38:28.852779 p:7224 t:4712 [dbg] Did set property: "Picard XY Stage"-"X-Min" = "1"
2014-04-02T15:38:28.852779 p:7224 t:4712 [dbg] Will set property: "Picard XY Stage"-"Y-Max" = "8000"
2014-04-02T15:38:28.852779 p:7224 t:4712 [dbg] Did set property: "Picard XY Stage"-"Y-Max" = "8000"
2014-04-02T15:38:28.852779 p:7224 t:4712 [dbg] Will set property: "Picard XY Stage"-"Y-Min" = "1"
2014-04-02T15:38:28.852779 p:7224 t:4712 [dbg] Did set property: "Picard XY Stage"-"Y-Min" = "1"
2014-04-02T15:38:28.852779 p:7224 t:4712 [dbg] Will set property: "COM3"-"AnswerTimeout" = "500.0000"
2014-04-02T15:38:28.852779 p:7224 t:4712 [dbg] Did set property: "COM3"-"AnswerTimeout" = "500.0000"
2014-04-02T15:38:28.852779 p:7224 t:4712 [dbg] Will set property: "COM3"-"BaudRate" = "115200"
2014-04-02T15:38:28.852779 p:7224 t:4712 [dbg] Did set property: "COM3"-"BaudRate" = "115200"
2014-04-02T15:38:28.852779 p:7224 t:4712 [dbg] Will set property: "COM3"-"DelayBetweenCharsMs" = "0.0000"
2014-04-02T15:38:28.852779 p:7224 t:4712 [dbg] Did set property: "COM3"-"DelayBetweenCharsMs" = "0.0000"
2014-04-02T15:38:28.852779 p:7224 t:4712 [dbg] Will set property: "COM3"-"Handshaking" = "Off"
2014-04-02T15:38:28.852779 p:7224 t:4712 [dbg] Did set property: "COM3"-"Handshaking" = "Off"
2014-04-02T15:38:28.852779 p:7224 t:4712 [dbg] Will set property: "COM3"-"Parity" = "None"
2014-04-02T15:38:28.852779 p:7224 t:4712 [dbg] Did set property: "COM3"-"Parity" = "None"
2014-04-02T15:38:28.852779 p:7224 t:4712 [dbg] Will set property: "COM3"-"StopBits" = "1"
2014-04-02T15:38:28.852779 p:7224 t:4712 [dbg] Did set property: "COM3"-"StopBits" = "1"
2014-04-02T15:38:28.852779 p:7224 t:4712 [dbg] Will set property: "COM3"-"Verbose" = "1"
2014-04-02T15:38:28.852779 p:7224 t:4712 [dbg] Did set property: "COM3"-"Verbose" = "1"
2014-04-02T15:38:28.852779 p:7224 t:4712 [dbg] Will set property: "Core"-"Initialize" = "1"
2014-04-02T15:38:28.852779 p:7224 t:4712 [LOG] Starting initialization sequence for 5 devices...
2014-04-02T15:38:28.868379 p:7224 t:4712 [dbg] Device COM3 debug message: Attempting to set baud of COM3 to 115200
2014-04-02T15:38:28.868379 p:7224 t:4712 [dbg] Device COM3 debug message: Attempting to set flow of COM3 to none
2014-04-02T15:38:28.883979 p:7224 t:4712 [dbg] Device COM3 debug message: Attempting to set parity of COM3 to none
2014-04-02T15:38:28.883979 p:7224 t:4712 [dbg] Device COM3 debug message: Attempting to set stopBits of COM3 to 1
2014-04-02T15:38:28.915179 p:7224 t:4712 [LOG] Device COM3 initialized.
2014-04-02T15:38:30.015441 p:7224 t:4712 [LOG] Device OrcaFlash set as default camera.
2014-04-02T15:38:30.015441 p:7224 t:4712 [LOG] Device OrcaFlash initialized.
2014-04-02T15:38:30.022441 p:7224 t:4712 [LOG] Device Picard Twister initialized.
2014-04-02T15:38:30.042442 p:7224 t:4712 [LOG] Device Picard Z Stage initialized.
2014-04-02T15:38:30.078444 p:7224 t:4712 [LOG] Device Picard XY Stage set as default xyStage.
2014-04-02T15:38:30.078444 p:7224 t:4712 [LOG] Device Picard XY Stage initialized.
2014-04-02T15:38:30.078444 p:7224 t:4712 [dbg] > Notification for Device: Core Property: Initialize changed to value: 1
2014-04-02T15:38:30.078444 p:7224 t:4712 [dbg] Did set property: "Core"-"Initialize" = "1"
2014-04-02T15:38:30.078444 p:7224 t:4712 [dbg] Will set property: "Core"-"Camera" = "OrcaFlash"
2014-04-02T15:38:30.078444 p:7224 t:4712 [LOG] Camera device set to OrcaFlash
2014-04-02T15:38:30.078444 p:7224 t:4712 [dbg] > Notification for Device: Core Property: Camera changed to value: OrcaFlash
2014-04-02T15:38:30.078444 p:7224 t:4712 [dbg] Did set property: "Core"-"Camera" = "OrcaFlash"
2014-04-02T15:38:30.078444 p:7224 t:4712 [dbg] Will set property: "Core"-"Shutter" = "Cobolt"
2014-04-02T15:38:30.078444 p:7224 t:4712 [dbg] Will set property: "Core"-"Focus" = "Picard Z Stage"
2014-04-02T15:38:30.078444 p:7224 t:4712 [LOG] Focus device set to Picard Z Stage
2014-04-02T15:38:30.078444 p:7224 t:4712 [dbg] > Notification for Device: Core Property: Focus changed to value: Picard Z Stage
2014-04-02T15:38:30.078444 p:7224 t:4712 [dbg] Did set property: "Core"-"Focus" = "Picard Z Stage"
2014-04-02T15:38:30.078444 p:7224 t:4712 [dbg] Will set property: "Core"-"AutoShutter" = "1"
2014-04-02T15:38:30.078444 p:7224 t:4712 [LOG] Auto shutter ON.
2014-04-02T15:38:30.078444 p:7224 t:4712 [dbg] > Notification for Device: Core Property: AutoShutter changed to value: 1
2014-04-02T15:38:30.078444 p:7224 t:4712 [dbg] Did set property: "Core"-"AutoShutter" = "1"
2014-04-02T15:38:30.079444 p:7224 t:4712 [LOG] > 
java.lang.Exception: Line 8: Device,Cobolt,Cobolt,Cobolt
Failed to load device adapter "Cobolt" from "C:\Users\User\Desktop\OpenSPIM.app\mm\win32\mmgr_dal_Cobolt.dll"

Line 15: Property,Cobolt,Max Power,60.0000
No device with label "Cobolt"

Line 16: Property,Cobolt,Port,COM3
No device with label "Cobolt"

Line 44: Property,Core,Shutter,Cobolt
Cannot set Core property Shutter to invalid value "Cobolt"

 in Thread[AWT-EventQueue-0,6,main]
  at mmcorej.MMCoreJJNI.CMMCore_loadSystemConfiguration(Native Method)
  at mmcorej.CMMCore.loadSystemConfiguration(CMMCore.java:341)
  at org.micromanager.MMStudioMainFrame.loadSystemConfiguration(MMStudioMainFrame.java:3289)
  at org.micromanager.MMStudioMainFrame.access$2400(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48.windowOpened(MMStudioMainFrame.java:1514)
  at java.awt.AWTEventMulticaster.windowOpened(AWTEventMulticaster.java:322)
  at java.awt.Window.processWindowEvent(Window.java:1862)
  at javax.swing.JFrame.processWindowEvent(JFrame.java:274)
  at java.awt.Window.processEvent(Window.java:1823)
  at java.awt.Component.dispatchEventImpl(Component.java:4652)
  at java.awt.Container.dispatchEventImpl(Container.java:2099)
  at java.awt.Window.dispatchEventImpl(Window.java:2478)
  at java.awt.Component.dispatchEvent(Component.java:4482)
  at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:644)
  at java.awt.EventQueue.access$000(EventQueue.java:85)
  at java.awt.EventQueue$1.run(EventQueue.java:603)
  at java.awt.EventQueue$1.run(EventQueue.java:601)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
  at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
  at java.awt.EventQueue$2.run(EventQueue.java:617)
  at java.awt.EventQueue$2.run(EventQueue.java:615)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
  at java.awt.EventQueue.dispatchEvent(EventQueue.java:614)
  at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269)
  at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184)
  at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174)
  at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169)
  at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161)
  at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
2014-04-02T15:38:35.170735 p:7224 t:4712 [LOG] System state cache updated.
2014-04-02T15:38:35.205737 p:7224 t:4712 [LOG] > Startup script file (C:\Users\User\Desktop\OpenSPIM.app/MMStartup.bsh) not present.
2014-04-02T15:38:38.094903 p:7224 t:4712 [LOG] > [UI] JMenu "Plugins" clicked in MMStudioMainFrame.
2014-04-02T15:39:12.566874 p:7224 t:4712 [LOG] > [UI] JMenu "Plugins" clicked in MMStudioMainFrame.
2014-04-02T15:39:18.564217 p:7224 t:4712 [dbg] Waiting for device COM3...
2014-04-02T15:39:18.565217 p:7224 t:4712 [dbg] Finished waiting.
2014-04-02T15:39:18.565217 p:7224 t:4712 [dbg] Waiting for device OrcaFlash...
2014-04-02T15:39:18.565217 p:7224 t:4712 [dbg] Finished waiting.
2014-04-02T15:39:18.565217 p:7224 t:4712 [dbg] Waiting for device Picard Twister...
2014-04-02T15:39:18.565217 p:7224 t:4712 [dbg] Finished waiting.
2014-04-02T15:39:18.565217 p:7224 t:4712 [dbg] Waiting for device Picard Z Stage...
2014-04-02T15:39:18.565217 p:7224 t:4712 [dbg] Finished waiting.
2014-04-02T15:39:18.565217 p:7224 t:4712 [dbg] Waiting for device Picard XY Stage...
2014-04-02T15:39:18.565217 p:7224 t:4712 [dbg] Finished waiting.
2014-04-02T15:40:34.366557 p:2928 t:7808 [LOG] -------->>
2014-04-02T15:40:34.366557 p:2928 t:7808 [LOG] Core session started by User on OPENSPIM01
2014-04-02T15:40:34.366557 p:2928 t:7808 [LOG] Debug logging disabled
2014-04-02T15:40:34.366557 p:2928 t:7808 [LOG] Debug logging enabled
2014-04-02T15:40:34.366557 p:2928 t:7808 [LOG] > MM Studio version: 1.4.x dev
2014-04-02T15:40:34.366557 p:2928 t:7808 [LOG] > MMCore version 2.3.2
2014-04-02T15:40:34.366557 p:2928 t:7808 [LOG] > Device API version 57, Module API version 8
2014-04-02T15:40:34.366557 p:2928 t:7808 [LOG] > Operating System: Windows 7 (x86) 6.1
2014-04-02T15:40:34.366557 p:2928 t:7808 [LOG] > JVM: Java HotSpot(TM) Client VM, version 1.6.0_24, 32-bit
2014-04-02T15:40:34.366557 p:2928 t:7808 [dbg] Circular buffer set to 25 MB.
2014-04-02T15:40:34.382157 p:2928 t:6288 [LOG] > Failed to load spim.FitPlane$1 java.lang.ClassNotFoundException: org.apache.commons.math.analysis.MultivariateRealFunction
java.lang.NoClassDefFoundError: org/apache/commons/math/analysis/MultivariateRealFunction in Thread[Plugin loading,6,main]
  at java.lang.ClassLoader.defineClass1(Native Method)
  at java.lang.ClassLoader.defineClassCond(ClassLoader.java:632)
  at java.lang.ClassLoader.defineClass(ClassLoader.java:616)
  at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:141)
  at java.net.URLClassLoader.defineClass(URLClassLoader.java:283)
  at java.net.URLClassLoader.access$000(URLClassLoader.java:58)
  at java.net.URLClassLoader$1.run(URLClassLoader.java:197)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.analysis.MultivariateRealFunction
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.ClassLoader.defineClass1(Native Method)
  at java.lang.ClassLoader.defineClassCond(ClassLoader.java:632)
  at java.lang.ClassLoader.defineClass(ClassLoader.java:616)
  at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:141)
  at java.net.URLClassLoader.defineClass(URLClassLoader.java:283)
  at java.net.URLClassLoader.access$000(URLClassLoader.java:58)
  at java.net.URLClassLoader$1.run(URLClassLoader.java:197)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:40:34.382157 p:2928 t:6288 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T15:40:34.382157 p:2928 t:6288 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:40:34.382157 p:2928 t:6288 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:40:34.382157 p:2928 t:6288 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:40:34.382157 p:2928 t:6288 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:40:34.382157 p:2928 t:6288 [LOG] > java.lang.ClassLoader.defineClass1(Native Method)
2014-04-02T15:40:34.382157 p:2928 t:6288 [LOG] > java.lang.ClassLoader.defineClassCond(ClassLoader.java:632)
2014-04-02T15:40:34.382157 p:2928 t:6288 [LOG] > java.lang.ClassLoader.defineClass(ClassLoader.java:616)
2014-04-02T15:40:34.382157 p:2928 t:6288 [LOG] > java.security.SecureClassLoader.defineClass(SecureClassLoader.java:141)
2014-04-02T15:40:34.382157 p:2928 t:6288 [LOG] > java.net.URLClassLoader.defineClass(URLClassLoader.java:283)
2014-04-02T15:40:34.382157 p:2928 t:6288 [LOG] > java.net.URLClassLoader.access$000(URLClassLoader.java:58)
2014-04-02T15:40:34.382157 p:2928 t:6288 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:197)
2014-04-02T15:40:34.382157 p:2928 t:6288 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:40:34.382157 p:2928 t:6288 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:40:34.382157 p:2928 t:6288 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:40:34.382157 p:2928 t:6288 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:40:34.382157 p:2928 t:6288 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T15:40:34.382157 p:2928 t:6288 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T15:40:34.382157 p:2928 t:6288 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T15:40:34.382157 p:2928 t:6288 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T15:40:34.382157 p:2928 t:6288 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T15:40:34.382157 p:2928 t:6288 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:40:34.382157 p:2928 t:6288 [LOG] > Failed to load spim.FitPlane java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
java.lang.NoClassDefFoundError: org/apache/commons/math/geometry/Vector in Thread[Plugin loading,6,main]
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:40:34.382157 p:2928 t:6288 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T15:40:34.382157 p:2928 t:6288 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:40:34.382157 p:2928 t:6288 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:40:34.382157 p:2928 t:6288 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:40:34.382157 p:2928 t:6288 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:40:34.382157 p:2928 t:6288 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T15:40:34.382157 p:2928 t:6288 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T15:40:34.382157 p:2928 t:6288 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T15:40:34.382157 p:2928 t:6288 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T15:40:34.382157 p:2928 t:6288 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T15:40:34.382157 p:2928 t:6288 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:40:34.382157 p:2928 t:6288 [LOG] > Failed to load spim.FitSphere$1 java.lang.ClassNotFoundException: org.apache.commons.math.analysis.MultivariateRealFunction
java.lang.NoClassDefFoundError: org/apache/commons/math/analysis/MultivariateRealFunction in Thread[Plugin loading,6,main]
  at java.lang.ClassLoader.defineClass1(Native Method)
  at java.lang.ClassLoader.defineClassCond(ClassLoader.java:632)
  at java.lang.ClassLoader.defineClass(ClassLoader.java:616)
  at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:141)
  at java.net.URLClassLoader.defineClass(URLClassLoader.java:283)
  at java.net.URLClassLoader.access$000(URLClassLoader.java:58)
  at java.net.URLClassLoader$1.run(URLClassLoader.java:197)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.analysis.MultivariateRealFunction
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.ClassLoader.defineClass1(Native Method)
  at java.lang.ClassLoader.defineClassCond(ClassLoader.java:632)
  at java.lang.ClassLoader.defineClass(ClassLoader.java:616)
  at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:141)
  at java.net.URLClassLoader.defineClass(URLClassLoader.java:283)
  at java.net.URLClassLoader.access$000(URLClassLoader.java:58)
  at java.net.URLClassLoader$1.run(URLClassLoader.java:197)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:40:34.382157 p:2928 t:6288 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T15:40:34.382157 p:2928 t:6288 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:40:34.382157 p:2928 t:6288 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:40:34.382157 p:2928 t:6288 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:40:34.382157 p:2928 t:6288 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:40:34.382157 p:2928 t:6288 [LOG] > java.lang.ClassLoader.defineClass1(Native Method)
2014-04-02T15:40:34.382157 p:2928 t:6288 [LOG] > java.lang.ClassLoader.defineClassCond(ClassLoader.java:632)
2014-04-02T15:40:34.382157 p:2928 t:6288 [LOG] > java.lang.ClassLoader.defineClass(ClassLoader.java:616)
2014-04-02T15:40:34.382157 p:2928 t:6288 [LOG] > java.security.SecureClassLoader.defineClass(SecureClassLoader.java:141)
2014-04-02T15:40:34.382157 p:2928 t:6288 [LOG] > java.net.URLClassLoader.defineClass(URLClassLoader.java:283)
2014-04-02T15:40:34.382157 p:2928 t:6288 [LOG] > java.net.URLClassLoader.access$000(URLClassLoader.java:58)
2014-04-02T15:40:34.382157 p:2928 t:6288 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:197)
2014-04-02T15:40:34.382157 p:2928 t:6288 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:40:34.382157 p:2928 t:6288 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:40:34.382157 p:2928 t:6288 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:40:34.382157 p:2928 t:6288 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:40:34.382157 p:2928 t:6288 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T15:40:34.382157 p:2928 t:6288 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T15:40:34.382157 p:2928 t:6288 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T15:40:34.382157 p:2928 t:6288 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T15:40:34.382157 p:2928 t:6288 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T15:40:34.382157 p:2928 t:6288 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:40:34.382157 p:2928 t:6288 [LOG] > Failed to load spim.FitSphere java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
java.lang.NoClassDefFoundError: org/apache/commons/math/geometry/Vector in Thread[Plugin loading,6,main]
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:40:34.382157 p:2928 t:6288 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T15:40:34.382157 p:2928 t:6288 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:40:34.382157 p:2928 t:6288 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:40:34.382157 p:2928 t:6288 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:40:34.382157 p:2928 t:6288 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:40:34.382157 p:2928 t:6288 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T15:40:34.382157 p:2928 t:6288 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T15:40:34.382157 p:2928 t:6288 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T15:40:34.382157 p:2928 t:6288 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T15:40:34.382157 p:2928 t:6288 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T15:40:34.382157 p:2928 t:6288 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:40:34.397757 p:2928 t:6288 [LOG] > Failed to load spim.PixelSizeCalibrator$GridLineFinder$1 java.lang.ClassNotFoundException: org.apache.commons.math.analysis.MultivariateRealFunction
java.lang.NoClassDefFoundError: org/apache/commons/math/analysis/MultivariateRealFunction in Thread[Plugin loading,6,main]
  at java.lang.ClassLoader.defineClass1(Native Method)
  at java.lang.ClassLoader.defineClassCond(ClassLoader.java:632)
  at java.lang.ClassLoader.defineClass(ClassLoader.java:616)
  at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:141)
  at java.net.URLClassLoader.defineClass(URLClassLoader.java:283)
  at java.net.URLClassLoader.access$000(URLClassLoader.java:58)
  at java.net.URLClassLoader$1.run(URLClassLoader.java:197)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.analysis.MultivariateRealFunction
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.ClassLoader.defineClass1(Native Method)
  at java.lang.ClassLoader.defineClassCond(ClassLoader.java:632)
  at java.lang.ClassLoader.defineClass(ClassLoader.java:616)
  at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:141)
  at java.net.URLClassLoader.defineClass(URLClassLoader.java:283)
  at java.net.URLClassLoader.access$000(URLClassLoader.java:58)
  at java.net.URLClassLoader$1.run(URLClassLoader.java:197)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:40:34.397757 p:2928 t:6288 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T15:40:34.397757 p:2928 t:6288 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:40:34.397757 p:2928 t:6288 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:40:34.397757 p:2928 t:6288 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:40:34.397757 p:2928 t:6288 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:40:34.397757 p:2928 t:6288 [LOG] > java.lang.ClassLoader.defineClass1(Native Method)
2014-04-02T15:40:34.397757 p:2928 t:6288 [LOG] > java.lang.ClassLoader.defineClassCond(ClassLoader.java:632)
2014-04-02T15:40:34.397757 p:2928 t:6288 [LOG] > java.lang.ClassLoader.defineClass(ClassLoader.java:616)
2014-04-02T15:40:34.397757 p:2928 t:6288 [LOG] > java.security.SecureClassLoader.defineClass(SecureClassLoader.java:141)
2014-04-02T15:40:34.397757 p:2928 t:6288 [LOG] > java.net.URLClassLoader.defineClass(URLClassLoader.java:283)
2014-04-02T15:40:34.397757 p:2928 t:6288 [LOG] > java.net.URLClassLoader.access$000(URLClassLoader.java:58)
2014-04-02T15:40:34.397757 p:2928 t:6288 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:197)
2014-04-02T15:40:34.397757 p:2928 t:6288 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:40:34.397757 p:2928 t:6288 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:40:34.397757 p:2928 t:6288 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:40:34.397757 p:2928 t:6288 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:40:34.397757 p:2928 t:6288 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T15:40:34.397757 p:2928 t:6288 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T15:40:34.397757 p:2928 t:6288 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T15:40:34.397757 p:2928 t:6288 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T15:40:34.397757 p:2928 t:6288 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T15:40:34.397757 p:2928 t:6288 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:40:34.397757 p:2928 t:6288 [LOG] > Failed to load spim.PixelSizeCalibrator$GridLineFinder java.lang.ClassNotFoundException: org.apache.commons.math.optimization.direct.AbstractSimplex
java.lang.NoClassDefFoundError: org/apache/commons/math/optimization/direct/AbstractSimplex in Thread[Plugin loading,6,main]
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.optimization.direct.AbstractSimplex
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:40:34.397757 p:2928 t:6288 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T15:40:34.397757 p:2928 t:6288 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:40:34.397757 p:2928 t:6288 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:40:34.397757 p:2928 t:6288 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:40:34.397757 p:2928 t:6288 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:40:34.397757 p:2928 t:6288 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T15:40:34.397757 p:2928 t:6288 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T15:40:34.397757 p:2928 t:6288 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T15:40:34.397757 p:2928 t:6288 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T15:40:34.397757 p:2928 t:6288 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T15:40:34.397757 p:2928 t:6288 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:40:34.428957 p:2928 t:6288 [LOG] > Failed to load spim.progacq.IntensityMeanAntiDrift java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
java.lang.NoClassDefFoundError: org/apache/commons/math/geometry/Vector in Thread[Plugin loading,6,main]
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:40:34.428957 p:2928 t:6288 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T15:40:34.428957 p:2928 t:6288 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:40:34.428957 p:2928 t:6288 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:40:34.428957 p:2928 t:6288 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:40:34.428957 p:2928 t:6288 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:40:34.428957 p:2928 t:6288 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T15:40:34.428957 p:2928 t:6288 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T15:40:34.428957 p:2928 t:6288 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T15:40:34.428957 p:2928 t:6288 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T15:40:34.428957 p:2928 t:6288 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T15:40:34.428957 p:2928 t:6288 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:40:34.444557 p:2928 t:6288 [LOG] > Failed to load spim.progacq.ProjDiffAntiDrift$1 java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
java.lang.NoClassDefFoundError: org/apache/commons/math/geometry/Vector in Thread[Plugin loading,6,main]
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:40:34.444557 p:2928 t:6288 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T15:40:34.444557 p:2928 t:6288 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:40:34.444557 p:2928 t:6288 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:40:34.444557 p:2928 t:6288 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:40:34.444557 p:2928 t:6288 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:40:34.444557 p:2928 t:6288 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T15:40:34.444557 p:2928 t:6288 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T15:40:34.444557 p:2928 t:6288 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T15:40:34.444557 p:2928 t:6288 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T15:40:34.444557 p:2928 t:6288 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T15:40:34.444557 p:2928 t:6288 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:40:34.444557 p:2928 t:6288 [LOG] > Failed to load spim.progacq.ProjDiffAntiDrift$AdjusterGUI java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
java.lang.NoClassDefFoundError: org/apache/commons/math/geometry/Vector in Thread[Plugin loading,6,main]
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:40:34.444557 p:2928 t:6288 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T15:40:34.444557 p:2928 t:6288 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:40:34.444557 p:2928 t:6288 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:40:34.444557 p:2928 t:6288 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:40:34.444557 p:2928 t:6288 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:40:34.444557 p:2928 t:6288 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T15:40:34.444557 p:2928 t:6288 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T15:40:34.444557 p:2928 t:6288 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T15:40:34.444557 p:2928 t:6288 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T15:40:34.444557 p:2928 t:6288 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T15:40:34.444557 p:2928 t:6288 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:40:34.444557 p:2928 t:6288 [LOG] > Failed to load spim.progacq.ProjDiffAntiDrift java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
java.lang.NoClassDefFoundError: org/apache/commons/math/geometry/Vector in Thread[Plugin loading,6,main]
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:40:34.444557 p:2928 t:6288 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T15:40:34.444557 p:2928 t:6288 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:40:34.444557 p:2928 t:6288 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:40:34.444557 p:2928 t:6288 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:40:34.444557 p:2928 t:6288 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:40:34.444557 p:2928 t:6288 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T15:40:34.444557 p:2928 t:6288 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T15:40:34.444557 p:2928 t:6288 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T15:40:34.444557 p:2928 t:6288 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T15:40:34.444557 p:2928 t:6288 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T15:40:34.444557 p:2928 t:6288 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:40:34.506957 p:2928 t:6288 [LOG] > Failed to load spim.SPIMAcquisition java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
java.lang.NoClassDefFoundError: org/apache/commons/math/geometry/Vector in Thread[Plugin loading,6,main]
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:40:34.506957 p:2928 t:6288 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T15:40:34.506957 p:2928 t:6288 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:40:34.506957 p:2928 t:6288 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:40:34.506957 p:2928 t:6288 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:40:34.506957 p:2928 t:6288 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:40:34.506957 p:2928 t:6288 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T15:40:34.506957 p:2928 t:6288 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T15:40:34.506957 p:2928 t:6288 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T15:40:34.506957 p:2928 t:6288 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T15:40:34.506957 p:2928 t:6288 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T15:40:34.506957 p:2928 t:6288 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:40:34.506957 p:2928 t:6288 [LOG] > Failed to load spim.SPIMAutoCalibrator java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
java.lang.NoClassDefFoundError: org/apache/commons/math/geometry/Vector in Thread[Plugin loading,6,main]
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:40:34.506957 p:2928 t:6288 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T15:40:34.506957 p:2928 t:6288 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:40:34.506957 p:2928 t:6288 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:40:34.506957 p:2928 t:6288 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:40:34.506957 p:2928 t:6288 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:40:34.506957 p:2928 t:6288 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T15:40:34.506957 p:2928 t:6288 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T15:40:34.506957 p:2928 t:6288 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T15:40:34.506957 p:2928 t:6288 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T15:40:34.506957 p:2928 t:6288 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T15:40:34.506957 p:2928 t:6288 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:40:34.506957 p:2928 t:6288 [LOG] > Failed to load spim.SPIMManualCalibrator java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
java.lang.NoClassDefFoundError: org/apache/commons/math/geometry/Vector in Thread[Plugin loading,6,main]
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:40:34.506957 p:2928 t:6288 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T15:40:34.506957 p:2928 t:6288 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:40:34.506957 p:2928 t:6288 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:40:34.506957 p:2928 t:6288 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:40:34.506957 p:2928 t:6288 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:40:34.506957 p:2928 t:6288 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T15:40:34.506957 p:2928 t:6288 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T15:40:34.506957 p:2928 t:6288 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T15:40:34.506957 p:2928 t:6288 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T15:40:34.506957 p:2928 t:6288 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T15:40:34.506957 p:2928 t:6288 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:40:34.506957 p:2928 t:6288 [LOG] > #uManager plugins: 94
2014-04-02T15:40:34.506957 p:2928 t:6288 [LOG] > interface found: javax.swing.event.ChangeListener
2014-04-02T15:40:34.506957 p:2928 t:6288 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:40:34.506957 p:2928 t:6288 [LOG] > interface found: java.awt.event.ItemListener
2014-04-02T15:40:34.506957 p:2928 t:6288 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:40:34.506957 p:2928 t:6288 [LOG] > interface found: java.awt.event.ItemListener
2014-04-02T15:40:34.506957 p:2928 t:6288 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:40:34.506957 p:2928 t:6288 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:40:34.506957 p:2928 t:6288 [LOG] > interface found: javax.swing.event.ChangeListener
2014-04-02T15:40:34.506957 p:2928 t:6288 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:40:34.506957 p:2928 t:6288 [LOG] > interface found: java.awt.event.MouseListener
2014-04-02T15:40:34.506957 p:2928 t:6288 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:40:34.506957 p:2928 t:6288 [LOG] > interface found: java.lang.Runnable
2014-04-02T15:40:34.506957 p:2928 t:6288 [LOG] > interface found: spim.progacq.AcqOutputHandler
2014-04-02T15:40:34.506957 p:2928 t:6288 [LOG] > interface found: java.lang.Thread$UncaughtExceptionHandler
2014-04-02T15:40:34.506957 p:2928 t:6288 [LOG] > interface found: spim.progacq.AcqOutputHandler
2014-04-02T15:40:34.506957 p:2928 t:6288 [LOG] > interface found: java.awt.event.MouseListener
2014-04-02T15:40:34.506957 p:2928 t:6288 [LOG] > interface found: spim.progacq.AcqOutputHandler
2014-04-02T15:40:34.506957 p:2928 t:6288 [LOG] > interface found: spim.progacq.AcqOutputHandler
2014-04-02T15:40:34.506957 p:2928 t:6288 [LOG] > interface found: spim.progacq.AntiDrift$Callback
2014-04-02T15:40:34.506957 p:2928 t:6288 [LOG] > interface found: java.lang.Runnable
2014-04-02T15:40:34.506957 p:2928 t:6288 [LOG] > interface found: java.lang.Runnable
2014-04-02T15:40:34.506957 p:2928 t:6288 [LOG] > interface found: javax.swing.event.ChangeListener
2014-04-02T15:40:34.506957 p:2928 t:6288 [LOG] > interface found: java.awt.event.KeyListener
2014-04-02T15:40:34.506957 p:2928 t:6288 [LOG] > interface found: java.lang.Iterable
2014-04-02T15:40:34.506957 p:2928 t:6288 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:40:34.506957 p:2928 t:6288 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:40:34.506957 p:2928 t:6288 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:40:34.506957 p:2928 t:6288 [LOG] > interface found: java.awt.event.ItemListener
2014-04-02T15:40:34.506957 p:2928 t:6288 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:40:34.506957 p:2928 t:6288 [LOG] > interface found: java.awt.event.ItemListener
2014-04-02T15:40:34.506957 p:2928 t:6288 [LOG] > interface found: java.awt.event.ItemListener
2014-04-02T15:40:34.506957 p:2928 t:6288 [LOG] > interface found: java.awt.event.ItemListener
2014-04-02T15:40:34.506957 p:2928 t:6288 [LOG] > interface found: java.awt.event.ItemListener
2014-04-02T15:40:34.506957 p:2928 t:6288 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:40:34.506957 p:2928 t:6288 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:40:34.506957 p:2928 t:6288 [LOG] > interface found: java.util.Comparator
2014-04-02T15:40:34.506957 p:2928 t:6288 [LOG] > interface found: spim.progacq.AntiDrift$Factory
2014-04-02T15:40:34.506957 p:2928 t:6288 [LOG] > interface found: spim.progacq.AntiDrift$Factory
2014-04-02T15:40:34.506957 p:2928 t:6288 [LOG] > interface found: spim.progacq.AntiDrift$Factory
2014-04-02T15:40:34.506957 p:2928 t:6288 [LOG] > interface found: spim.progacq.ProgrammaticAcquisitor$AcqProgressCallback
2014-04-02T15:40:34.506957 p:2928 t:6288 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:40:34.506957 p:2928 t:6288 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:40:34.506957 p:2928 t:6288 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:40:34.506957 p:2928 t:6288 [LOG] > interface found: spim.SPIMAutoCalibrator$RunnableWRet
2014-04-02T15:40:34.506957 p:2928 t:6288 [LOG] > interface found: java.lang.Runnable
2014-04-02T15:40:34.522557 p:2928 t:6288 [LOG] > Attempting to install autofocus plugin Autofocus
2014-04-02T15:40:34.522557 p:2928 t:6288 [LOG] > Attempting to install autofocus plugin AutofocusDuo
2014-04-02T15:40:34.538157 p:2928 t:6288 [LOG] > Attempting to install autofocus plugin AutofocusTB
2014-04-02T15:40:34.538157 p:2928 t:6288 [LOG] > Attempting to install autofocus plugin OughtaFocus
2014-04-02T15:40:36.410160 p:2928 t:7808 [dbg] Will set property: "Core"-"Initialize" = "0"
2014-04-02T15:40:36.410160 p:2928 t:7808 [LOG] All devices unloaded.
2014-04-02T15:40:36.410160 p:2928 t:7808 [dbg] > Notification for Device: Core Property: Initialize changed to value: 0
2014-04-02T15:40:36.410160 p:2928 t:7808 [dbg] Did set property: "Core"-"Initialize" = "0"
2014-04-02T15:40:36.425760 p:2928 t:7808 [LOG] Device COM3 loaded from SerialManager and labeled as COM3
2014-04-02T15:40:36.425760 p:2928 t:7808 [LOG] Error occurred. Device MMCore::loadDevice. Failed to load device adapter "Cobolt" from "C:\Users\User\Desktop\OpenSPIM.app\mm\win32\mmgr_dal_Cobolt.dll"
2014-04-02T15:40:36.425760 p:2928 t:7808 [LOG] Device HamamatsuHam_DCAM loaded from HamamatsuHam and labeled as OrcaFlash
2014-04-02T15:40:36.940561 p:2928 t:7808 [LOG] Device Picard Twister loaded from PicardStage and labeled as Picard Twister
2014-04-02T15:40:36.940561 p:2928 t:7808 [LOG] Device Picard Z Stage loaded from PicardStage and labeled as Picard Z Stage
2014-04-02T15:40:36.940561 p:2928 t:7808 [LOG] Device Picard XY Stage loaded from PicardStage and labeled as Picard XY Stage
2014-04-02T15:40:36.940561 p:2928 t:7808 [dbg] Will set property: "Cobolt"-"Max Power" = "60.0000"
2014-04-02T15:40:36.940561 p:2928 t:7808 [dbg] Will set property: "Cobolt"-"Port" = "COM3"
2014-04-02T15:40:36.940561 p:2928 t:7808 [dbg] Will set property: "Picard Twister"-"Serial Number" = "37"
2014-04-02T15:40:36.956161 p:2928 t:7808 [dbg] Did set property: "Picard Twister"-"Serial Number" = "37"
2014-04-02T15:40:36.956161 p:2928 t:7808 [dbg] Will set property: "Picard Z Stage"-"Serial Number" = "140"
2014-04-02T15:40:36.971761 p:2928 t:7808 [dbg] Did set property: "Picard Z Stage"-"Serial Number" = "140"
2014-04-02T15:40:36.971761 p:2928 t:7808 [dbg] Will set property: "Picard XY Stage"-"Serial Number (X)" = "139"
2014-04-02T15:40:36.987361 p:2928 t:7808 [dbg] Did set property: "Picard XY Stage"-"Serial Number (X)" = "139"
2014-04-02T15:40:36.987361 p:2928 t:7808 [dbg] Will set property: "Picard XY Stage"-"Serial Number (Y)" = "141"
2014-04-02T15:40:37.018561 p:2928 t:7808 [dbg] Did set property: "Picard XY Stage"-"Serial Number (Y)" = "141"
2014-04-02T15:40:37.018561 p:2928 t:7808 [dbg] Will set property: "Picard XY Stage"-"X-Max" = "8000"
2014-04-02T15:40:37.018561 p:2928 t:7808 [dbg] Did set property: "Picard XY Stage"-"X-Max" = "8000"
2014-04-02T15:40:37.018561 p:2928 t:7808 [dbg] Will set property: "Picard XY Stage"-"X-Min" = "1"
2014-04-02T15:40:37.018561 p:2928 t:7808 [dbg] Did set property: "Picard XY Stage"-"X-Min" = "1"
2014-04-02T15:40:37.018561 p:2928 t:7808 [dbg] Will set property: "Picard XY Stage"-"Y-Max" = "8000"
2014-04-02T15:40:37.018561 p:2928 t:7808 [dbg] Did set property: "Picard XY Stage"-"Y-Max" = "8000"
2014-04-02T15:40:37.018561 p:2928 t:7808 [dbg] Will set property: "Picard XY Stage"-"Y-Min" = "1"
2014-04-02T15:40:37.018561 p:2928 t:7808 [dbg] Did set property: "Picard XY Stage"-"Y-Min" = "1"
2014-04-02T15:40:37.018561 p:2928 t:7808 [dbg] Will set property: "COM3"-"AnswerTimeout" = "500.0000"
2014-04-02T15:40:37.018561 p:2928 t:7808 [dbg] Did set property: "COM3"-"AnswerTimeout" = "500.0000"
2014-04-02T15:40:37.018561 p:2928 t:7808 [dbg] Will set property: "COM3"-"BaudRate" = "115200"
2014-04-02T15:40:37.018561 p:2928 t:7808 [dbg] Did set property: "COM3"-"BaudRate" = "115200"
2014-04-02T15:40:37.018561 p:2928 t:7808 [dbg] Will set property: "COM3"-"DelayBetweenCharsMs" = "0.0000"
2014-04-02T15:40:37.018561 p:2928 t:7808 [dbg] Did set property: "COM3"-"DelayBetweenCharsMs" = "0.0000"
2014-04-02T15:40:37.018561 p:2928 t:7808 [dbg] Will set property: "COM3"-"Handshaking" = "Off"
2014-04-02T15:40:37.018561 p:2928 t:7808 [dbg] Did set property: "COM3"-"Handshaking" = "Off"
2014-04-02T15:40:37.018561 p:2928 t:7808 [dbg] Will set property: "COM3"-"Parity" = "None"
2014-04-02T15:40:37.018561 p:2928 t:7808 [dbg] Did set property: "COM3"-"Parity" = "None"
2014-04-02T15:40:37.018561 p:2928 t:7808 [dbg] Will set property: "COM3"-"StopBits" = "1"
2014-04-02T15:40:37.018561 p:2928 t:7808 [dbg] Did set property: "COM3"-"StopBits" = "1"
2014-04-02T15:40:37.018561 p:2928 t:7808 [dbg] Will set property: "COM3"-"Verbose" = "1"
2014-04-02T15:40:37.018561 p:2928 t:7808 [dbg] Did set property: "COM3"-"Verbose" = "1"
2014-04-02T15:40:37.018561 p:2928 t:7808 [dbg] Will set property: "Core"-"Initialize" = "1"
2014-04-02T15:40:37.018561 p:2928 t:7808 [LOG] Starting initialization sequence for 5 devices...
2014-04-02T15:40:37.018561 p:2928 t:7808 [dbg] Device COM3 debug message: Attempting to set baud of COM3 to 115200
2014-04-02T15:40:37.034161 p:2928 t:7808 [dbg] Device COM3 debug message: Attempting to set flow of COM3 to none
2014-04-02T15:40:37.034161 p:2928 t:7808 [dbg] Device COM3 debug message: Attempting to set parity of COM3 to none
2014-04-02T15:40:37.049761 p:2928 t:7808 [dbg] Device COM3 debug message: Attempting to set stopBits of COM3 to 1
2014-04-02T15:40:37.065361 p:2928 t:7808 [LOG] Device COM3 initialized.
2014-04-02T15:40:38.035615 p:2928 t:7808 [LOG] Device OrcaFlash set as default camera.
2014-04-02T15:40:38.035615 p:2928 t:7808 [LOG] Device OrcaFlash initialized.
2014-04-02T15:40:38.053616 p:2928 t:7808 [LOG] Device Picard Twister initialized.
2014-04-02T15:40:38.073617 p:2928 t:7808 [LOG] Device Picard Z Stage initialized.
2014-04-02T15:40:38.109619 p:2928 t:7808 [LOG] Device Picard XY Stage set as default xyStage.
2014-04-02T15:40:38.109619 p:2928 t:7808 [LOG] Device Picard XY Stage initialized.
2014-04-02T15:40:38.109619 p:2928 t:7808 [dbg] > Notification for Device: Core Property: Initialize changed to value: 1
2014-04-02T15:40:38.109619 p:2928 t:7808 [dbg] Did set property: "Core"-"Initialize" = "1"
2014-04-02T15:40:38.109619 p:2928 t:7808 [dbg] Will set property: "Core"-"Camera" = "OrcaFlash"
2014-04-02T15:40:38.109619 p:2928 t:7808 [LOG] Camera device set to OrcaFlash
2014-04-02T15:40:38.109619 p:2928 t:7808 [dbg] > Notification for Device: Core Property: Camera changed to value: OrcaFlash
2014-04-02T15:40:38.109619 p:2928 t:7808 [dbg] Did set property: "Core"-"Camera" = "OrcaFlash"
2014-04-02T15:40:38.109619 p:2928 t:7808 [dbg] Will set property: "Core"-"Shutter" = "Cobolt"
2014-04-02T15:40:38.109619 p:2928 t:7808 [dbg] Will set property: "Core"-"Focus" = "Picard Z Stage"
2014-04-02T15:40:38.109619 p:2928 t:7808 [LOG] Focus device set to Picard Z Stage
2014-04-02T15:40:38.109619 p:2928 t:7808 [dbg] > Notification for Device: Core Property: Focus changed to value: Picard Z Stage
2014-04-02T15:40:38.109619 p:2928 t:7808 [dbg] Did set property: "Core"-"Focus" = "Picard Z Stage"
2014-04-02T15:40:38.109619 p:2928 t:7808 [dbg] Will set property: "Core"-"AutoShutter" = "1"
2014-04-02T15:40:38.109619 p:2928 t:7808 [LOG] Auto shutter ON.
2014-04-02T15:40:38.109619 p:2928 t:7808 [dbg] > Notification for Device: Core Property: AutoShutter changed to value: 1
2014-04-02T15:40:38.109619 p:2928 t:7808 [dbg] Did set property: "Core"-"AutoShutter" = "1"
2014-04-02T15:40:38.110619 p:2928 t:7808 [LOG] > 
java.lang.Exception: Line 8: Device,Cobolt,Cobolt,Cobolt
Failed to load device adapter "Cobolt" from "C:\Users\User\Desktop\OpenSPIM.app\mm\win32\mmgr_dal_Cobolt.dll"

Line 15: Property,Cobolt,Max Power,60.0000
No device with label "Cobolt"

Line 16: Property,Cobolt,Port,COM3
No device with label "Cobolt"

Line 44: Property,Core,Shutter,Cobolt
Cannot set Core property Shutter to invalid value "Cobolt"

 in Thread[AWT-EventQueue-0,6,main]
  at mmcorej.MMCoreJJNI.CMMCore_loadSystemConfiguration(Native Method)
  at mmcorej.CMMCore.loadSystemConfiguration(CMMCore.java:341)
  at org.micromanager.MMStudioMainFrame.loadSystemConfiguration(MMStudioMainFrame.java:3289)
  at org.micromanager.MMStudioMainFrame.access$2400(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48.windowOpened(MMStudioMainFrame.java:1514)
  at java.awt.AWTEventMulticaster.windowOpened(AWTEventMulticaster.java:322)
  at java.awt.Window.processWindowEvent(Window.java:1862)
  at javax.swing.JFrame.processWindowEvent(JFrame.java:274)
  at java.awt.Window.processEvent(Window.java:1823)
  at java.awt.Component.dispatchEventImpl(Component.java:4652)
  at java.awt.Container.dispatchEventImpl(Container.java:2099)
  at java.awt.Window.dispatchEventImpl(Window.java:2478)
  at java.awt.Component.dispatchEvent(Component.java:4482)
  at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:644)
  at java.awt.EventQueue.access$000(EventQueue.java:85)
  at java.awt.EventQueue$1.run(EventQueue.java:603)
  at java.awt.EventQueue$1.run(EventQueue.java:601)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
  at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
  at java.awt.EventQueue$2.run(EventQueue.java:617)
  at java.awt.EventQueue$2.run(EventQueue.java:615)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
  at java.awt.EventQueue.dispatchEvent(EventQueue.java:614)
  at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269)
  at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184)
  at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174)
  at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169)
  at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161)
  at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
2014-04-02T15:40:42.209854 p:2928 t:7808 [LOG] System state cache updated.
2014-04-02T15:40:42.244856 p:2928 t:7808 [LOG] > Startup script file (C:\Users\User\Desktop\OpenSPIM.app/MMStartup.bsh) not present.
2014-04-02T15:40:44.061960 p:2928 t:7808 [dbg] Waiting for device COM3...
2014-04-02T15:40:44.061960 p:2928 t:7808 [dbg] Finished waiting.
2014-04-02T15:40:44.061960 p:2928 t:7808 [dbg] Waiting for device OrcaFlash...
2014-04-02T15:40:44.061960 p:2928 t:7808 [dbg] Finished waiting.
2014-04-02T15:40:44.061960 p:2928 t:7808 [dbg] Waiting for device Picard Twister...
2014-04-02T15:40:44.061960 p:2928 t:7808 [dbg] Finished waiting.
2014-04-02T15:40:44.061960 p:2928 t:7808 [dbg] Waiting for device Picard Z Stage...
2014-04-02T15:40:44.061960 p:2928 t:7808 [dbg] Finished waiting.
2014-04-02T15:40:44.061960 p:2928 t:7808 [dbg] Waiting for device Picard XY Stage...
2014-04-02T15:40:44.061960 p:2928 t:7808 [dbg] Finished waiting.
2014-04-02T15:41:08.429208 p:6012 t:1944 [LOG] -------->>
2014-04-02T15:41:08.429208 p:6012 t:1944 [LOG] Core session started by User on OPENSPIM01
2014-04-02T15:41:08.429208 p:6012 t:1944 [LOG] Debug logging disabled
2014-04-02T15:41:08.429208 p:6012 t:1944 [LOG] Debug logging enabled
2014-04-02T15:41:08.429208 p:6012 t:1944 [LOG] > MM Studio version: 1.4.x dev
2014-04-02T15:41:08.429208 p:6012 t:1944 [LOG] > MMCore version 2.3.2
2014-04-02T15:41:08.429208 p:6012 t:1944 [LOG] > Device API version 57, Module API version 8
2014-04-02T15:41:08.429208 p:6012 t:1944 [LOG] > Operating System: Windows 7 (x86) 6.1
2014-04-02T15:41:08.429208 p:6012 t:1944 [LOG] > JVM: Java HotSpot(TM) Client VM, version 1.6.0_24, 32-bit
2014-04-02T15:41:08.429208 p:6012 t:1944 [dbg] Circular buffer set to 25 MB.
2014-04-02T15:41:08.444808 p:6012 t:7868 [LOG] > Failed to load spim.FitPlane$1 java.lang.ClassNotFoundException: org.apache.commons.math.analysis.MultivariateRealFunction
java.lang.NoClassDefFoundError: org/apache/commons/math/analysis/MultivariateRealFunction in Thread[Plugin loading,6,main]
  at java.lang.ClassLoader.defineClass1(Native Method)
  at java.lang.ClassLoader.defineClassCond(ClassLoader.java:632)
  at java.lang.ClassLoader.defineClass(ClassLoader.java:616)
  at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:141)
  at java.net.URLClassLoader.defineClass(URLClassLoader.java:283)
  at java.net.URLClassLoader.access$000(URLClassLoader.java:58)
  at java.net.URLClassLoader$1.run(URLClassLoader.java:197)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.analysis.MultivariateRealFunction
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.ClassLoader.defineClass1(Native Method)
  at java.lang.ClassLoader.defineClassCond(ClassLoader.java:632)
  at java.lang.ClassLoader.defineClass(ClassLoader.java:616)
  at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:141)
  at java.net.URLClassLoader.defineClass(URLClassLoader.java:283)
  at java.net.URLClassLoader.access$000(URLClassLoader.java:58)
  at java.net.URLClassLoader$1.run(URLClassLoader.java:197)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:41:08.444808 p:6012 t:7868 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T15:41:08.444808 p:6012 t:7868 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:41:08.444808 p:6012 t:7868 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:41:08.444808 p:6012 t:7868 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:41:08.444808 p:6012 t:7868 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:41:08.444808 p:6012 t:7868 [LOG] > java.lang.ClassLoader.defineClass1(Native Method)
2014-04-02T15:41:08.444808 p:6012 t:7868 [LOG] > java.lang.ClassLoader.defineClassCond(ClassLoader.java:632)
2014-04-02T15:41:08.444808 p:6012 t:7868 [LOG] > java.lang.ClassLoader.defineClass(ClassLoader.java:616)
2014-04-02T15:41:08.444808 p:6012 t:7868 [LOG] > java.security.SecureClassLoader.defineClass(SecureClassLoader.java:141)
2014-04-02T15:41:08.444808 p:6012 t:7868 [LOG] > java.net.URLClassLoader.defineClass(URLClassLoader.java:283)
2014-04-02T15:41:08.444808 p:6012 t:7868 [LOG] > java.net.URLClassLoader.access$000(URLClassLoader.java:58)
2014-04-02T15:41:08.444808 p:6012 t:7868 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:197)
2014-04-02T15:41:08.444808 p:6012 t:7868 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:41:08.444808 p:6012 t:7868 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:41:08.444808 p:6012 t:7868 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:41:08.444808 p:6012 t:7868 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:41:08.444808 p:6012 t:7868 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T15:41:08.444808 p:6012 t:7868 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T15:41:08.444808 p:6012 t:7868 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T15:41:08.444808 p:6012 t:7868 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T15:41:08.444808 p:6012 t:7868 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T15:41:08.444808 p:6012 t:7868 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:41:08.444808 p:6012 t:7868 [LOG] > Failed to load spim.FitPlane java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
java.lang.NoClassDefFoundError: org/apache/commons/math/geometry/Vector in Thread[Plugin loading,6,main]
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:41:08.444808 p:6012 t:7868 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T15:41:08.444808 p:6012 t:7868 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:41:08.444808 p:6012 t:7868 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:41:08.444808 p:6012 t:7868 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:41:08.444808 p:6012 t:7868 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:41:08.444808 p:6012 t:7868 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T15:41:08.444808 p:6012 t:7868 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T15:41:08.444808 p:6012 t:7868 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T15:41:08.444808 p:6012 t:7868 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T15:41:08.444808 p:6012 t:7868 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T15:41:08.444808 p:6012 t:7868 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:41:08.444808 p:6012 t:7868 [LOG] > Failed to load spim.FitSphere$1 java.lang.ClassNotFoundException: org.apache.commons.math.analysis.MultivariateRealFunction
java.lang.NoClassDefFoundError: org/apache/commons/math/analysis/MultivariateRealFunction in Thread[Plugin loading,6,main]
  at java.lang.ClassLoader.defineClass1(Native Method)
  at java.lang.ClassLoader.defineClassCond(ClassLoader.java:632)
  at java.lang.ClassLoader.defineClass(ClassLoader.java:616)
  at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:141)
  at java.net.URLClassLoader.defineClass(URLClassLoader.java:283)
  at java.net.URLClassLoader.access$000(URLClassLoader.java:58)
  at java.net.URLClassLoader$1.run(URLClassLoader.java:197)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.analysis.MultivariateRealFunction
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.ClassLoader.defineClass1(Native Method)
  at java.lang.ClassLoader.defineClassCond(ClassLoader.java:632)
  at java.lang.ClassLoader.defineClass(ClassLoader.java:616)
  at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:141)
  at java.net.URLClassLoader.defineClass(URLClassLoader.java:283)
  at java.net.URLClassLoader.access$000(URLClassLoader.java:58)
  at java.net.URLClassLoader$1.run(URLClassLoader.java:197)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:41:08.444808 p:6012 t:7868 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T15:41:08.444808 p:6012 t:7868 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:41:08.444808 p:6012 t:7868 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:41:08.444808 p:6012 t:7868 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:41:08.444808 p:6012 t:7868 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:41:08.444808 p:6012 t:7868 [LOG] > java.lang.ClassLoader.defineClass1(Native Method)
2014-04-02T15:41:08.444808 p:6012 t:7868 [LOG] > java.lang.ClassLoader.defineClassCond(ClassLoader.java:632)
2014-04-02T15:41:08.444808 p:6012 t:7868 [LOG] > java.lang.ClassLoader.defineClass(ClassLoader.java:616)
2014-04-02T15:41:08.444808 p:6012 t:7868 [LOG] > java.security.SecureClassLoader.defineClass(SecureClassLoader.java:141)
2014-04-02T15:41:08.444808 p:6012 t:7868 [LOG] > java.net.URLClassLoader.defineClass(URLClassLoader.java:283)
2014-04-02T15:41:08.444808 p:6012 t:7868 [LOG] > java.net.URLClassLoader.access$000(URLClassLoader.java:58)
2014-04-02T15:41:08.444808 p:6012 t:7868 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:197)
2014-04-02T15:41:08.444808 p:6012 t:7868 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:41:08.444808 p:6012 t:7868 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:41:08.444808 p:6012 t:7868 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:41:08.444808 p:6012 t:7868 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:41:08.444808 p:6012 t:7868 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T15:41:08.444808 p:6012 t:7868 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T15:41:08.444808 p:6012 t:7868 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T15:41:08.444808 p:6012 t:7868 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T15:41:08.444808 p:6012 t:7868 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T15:41:08.444808 p:6012 t:7868 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:41:08.444808 p:6012 t:7868 [LOG] > Failed to load spim.FitSphere java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
java.lang.NoClassDefFoundError: org/apache/commons/math/geometry/Vector in Thread[Plugin loading,6,main]
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:41:08.444808 p:6012 t:7868 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T15:41:08.444808 p:6012 t:7868 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:41:08.444808 p:6012 t:7868 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:41:08.444808 p:6012 t:7868 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:41:08.444808 p:6012 t:7868 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:41:08.444808 p:6012 t:7868 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T15:41:08.444808 p:6012 t:7868 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T15:41:08.444808 p:6012 t:7868 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T15:41:08.444808 p:6012 t:7868 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T15:41:08.444808 p:6012 t:7868 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T15:41:08.444808 p:6012 t:7868 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:41:08.476008 p:6012 t:7868 [LOG] > Failed to load spim.PixelSizeCalibrator$GridLineFinder$1 java.lang.ClassNotFoundException: org.apache.commons.math.analysis.MultivariateRealFunction
java.lang.NoClassDefFoundError: org/apache/commons/math/analysis/MultivariateRealFunction in Thread[Plugin loading,6,main]
  at java.lang.ClassLoader.defineClass1(Native Method)
  at java.lang.ClassLoader.defineClassCond(ClassLoader.java:632)
  at java.lang.ClassLoader.defineClass(ClassLoader.java:616)
  at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:141)
  at java.net.URLClassLoader.defineClass(URLClassLoader.java:283)
  at java.net.URLClassLoader.access$000(URLClassLoader.java:58)
  at java.net.URLClassLoader$1.run(URLClassLoader.java:197)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.analysis.MultivariateRealFunction
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.ClassLoader.defineClass1(Native Method)
  at java.lang.ClassLoader.defineClassCond(ClassLoader.java:632)
  at java.lang.ClassLoader.defineClass(ClassLoader.java:616)
  at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:141)
  at java.net.URLClassLoader.defineClass(URLClassLoader.java:283)
  at java.net.URLClassLoader.access$000(URLClassLoader.java:58)
  at java.net.URLClassLoader$1.run(URLClassLoader.java:197)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:41:08.476008 p:6012 t:7868 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T15:41:08.476008 p:6012 t:7868 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:41:08.476008 p:6012 t:7868 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:41:08.476008 p:6012 t:7868 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:41:08.476008 p:6012 t:7868 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:41:08.476008 p:6012 t:7868 [LOG] > java.lang.ClassLoader.defineClass1(Native Method)
2014-04-02T15:41:08.476008 p:6012 t:7868 [LOG] > java.lang.ClassLoader.defineClassCond(ClassLoader.java:632)
2014-04-02T15:41:08.476008 p:6012 t:7868 [LOG] > java.lang.ClassLoader.defineClass(ClassLoader.java:616)
2014-04-02T15:41:08.476008 p:6012 t:7868 [LOG] > java.security.SecureClassLoader.defineClass(SecureClassLoader.java:141)
2014-04-02T15:41:08.476008 p:6012 t:7868 [LOG] > java.net.URLClassLoader.defineClass(URLClassLoader.java:283)
2014-04-02T15:41:08.476008 p:6012 t:7868 [LOG] > java.net.URLClassLoader.access$000(URLClassLoader.java:58)
2014-04-02T15:41:08.476008 p:6012 t:7868 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:197)
2014-04-02T15:41:08.476008 p:6012 t:7868 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:41:08.476008 p:6012 t:7868 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:41:08.476008 p:6012 t:7868 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:41:08.476008 p:6012 t:7868 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:41:08.476008 p:6012 t:7868 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T15:41:08.476008 p:6012 t:7868 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T15:41:08.476008 p:6012 t:7868 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T15:41:08.476008 p:6012 t:7868 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T15:41:08.476008 p:6012 t:7868 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T15:41:08.476008 p:6012 t:7868 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:41:08.476008 p:6012 t:7868 [LOG] > Failed to load spim.PixelSizeCalibrator$GridLineFinder java.lang.ClassNotFoundException: org.apache.commons.math.optimization.direct.AbstractSimplex
java.lang.NoClassDefFoundError: org/apache/commons/math/optimization/direct/AbstractSimplex in Thread[Plugin loading,6,main]
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.optimization.direct.AbstractSimplex
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:41:08.476008 p:6012 t:7868 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T15:41:08.476008 p:6012 t:7868 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:41:08.476008 p:6012 t:7868 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:41:08.476008 p:6012 t:7868 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:41:08.476008 p:6012 t:7868 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:41:08.476008 p:6012 t:7868 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T15:41:08.476008 p:6012 t:7868 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T15:41:08.476008 p:6012 t:7868 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T15:41:08.476008 p:6012 t:7868 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T15:41:08.476008 p:6012 t:7868 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T15:41:08.476008 p:6012 t:7868 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:41:08.491608 p:6012 t:7868 [LOG] > Failed to load spim.progacq.IntensityMeanAntiDrift java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
java.lang.NoClassDefFoundError: org/apache/commons/math/geometry/Vector in Thread[Plugin loading,6,main]
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:41:08.491608 p:6012 t:7868 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T15:41:08.491608 p:6012 t:7868 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:41:08.491608 p:6012 t:7868 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:41:08.491608 p:6012 t:7868 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:41:08.491608 p:6012 t:7868 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:41:08.491608 p:6012 t:7868 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T15:41:08.491608 p:6012 t:7868 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T15:41:08.491608 p:6012 t:7868 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T15:41:08.491608 p:6012 t:7868 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T15:41:08.491608 p:6012 t:7868 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T15:41:08.491608 p:6012 t:7868 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:41:08.507208 p:6012 t:7868 [LOG] > Failed to load spim.progacq.ProjDiffAntiDrift$1 java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
java.lang.NoClassDefFoundError: org/apache/commons/math/geometry/Vector in Thread[Plugin loading,6,main]
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:41:08.507208 p:6012 t:7868 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T15:41:08.507208 p:6012 t:7868 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:41:08.507208 p:6012 t:7868 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:41:08.507208 p:6012 t:7868 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:41:08.507208 p:6012 t:7868 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:41:08.507208 p:6012 t:7868 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T15:41:08.507208 p:6012 t:7868 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T15:41:08.507208 p:6012 t:7868 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T15:41:08.507208 p:6012 t:7868 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T15:41:08.507208 p:6012 t:7868 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T15:41:08.507208 p:6012 t:7868 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:41:08.522808 p:6012 t:7868 [LOG] > Failed to load spim.progacq.ProjDiffAntiDrift$AdjusterGUI java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
java.lang.NoClassDefFoundError: org/apache/commons/math/geometry/Vector in Thread[Plugin loading,6,main]
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:41:08.522808 p:6012 t:7868 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T15:41:08.522808 p:6012 t:7868 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:41:08.522808 p:6012 t:7868 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:41:08.522808 p:6012 t:7868 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:41:08.522808 p:6012 t:7868 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:41:08.522808 p:6012 t:7868 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T15:41:08.522808 p:6012 t:7868 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T15:41:08.522808 p:6012 t:7868 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T15:41:08.522808 p:6012 t:7868 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T15:41:08.522808 p:6012 t:7868 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T15:41:08.522808 p:6012 t:7868 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:41:08.522808 p:6012 t:7868 [LOG] > Failed to load spim.progacq.ProjDiffAntiDrift java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
java.lang.NoClassDefFoundError: org/apache/commons/math/geometry/Vector in Thread[Plugin loading,6,main]
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:41:08.522808 p:6012 t:7868 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T15:41:08.522808 p:6012 t:7868 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:41:08.522808 p:6012 t:7868 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:41:08.522808 p:6012 t:7868 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:41:08.522808 p:6012 t:7868 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:41:08.522808 p:6012 t:7868 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T15:41:08.522808 p:6012 t:7868 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T15:41:08.522808 p:6012 t:7868 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T15:41:08.522808 p:6012 t:7868 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T15:41:08.522808 p:6012 t:7868 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T15:41:08.522808 p:6012 t:7868 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:41:08.569608 p:6012 t:7868 [LOG] > Failed to load spim.SPIMAcquisition java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
java.lang.NoClassDefFoundError: org/apache/commons/math/geometry/Vector in Thread[Plugin loading,6,main]
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:41:08.569608 p:6012 t:7868 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T15:41:08.569608 p:6012 t:7868 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:41:08.569608 p:6012 t:7868 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:41:08.569608 p:6012 t:7868 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:41:08.569608 p:6012 t:7868 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:41:08.569608 p:6012 t:7868 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T15:41:08.569608 p:6012 t:7868 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T15:41:08.569608 p:6012 t:7868 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T15:41:08.569608 p:6012 t:7868 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T15:41:08.569608 p:6012 t:7868 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T15:41:08.569608 p:6012 t:7868 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:41:08.585209 p:6012 t:7868 [LOG] > Failed to load spim.SPIMAutoCalibrator java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
java.lang.NoClassDefFoundError: org/apache/commons/math/geometry/Vector in Thread[Plugin loading,6,main]
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:41:08.585209 p:6012 t:7868 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T15:41:08.585209 p:6012 t:7868 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:41:08.585209 p:6012 t:7868 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:41:08.585209 p:6012 t:7868 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:41:08.585209 p:6012 t:7868 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:41:08.585209 p:6012 t:7868 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T15:41:08.585209 p:6012 t:7868 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T15:41:08.585209 p:6012 t:7868 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T15:41:08.585209 p:6012 t:7868 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T15:41:08.585209 p:6012 t:7868 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T15:41:08.585209 p:6012 t:7868 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:41:08.585209 p:6012 t:7868 [LOG] > Failed to load spim.SPIMManualCalibrator java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
java.lang.NoClassDefFoundError: org/apache/commons/math/geometry/Vector in Thread[Plugin loading,6,main]
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:41:08.585209 p:6012 t:7868 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T15:41:08.585209 p:6012 t:7868 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:41:08.585209 p:6012 t:7868 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:41:08.585209 p:6012 t:7868 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:41:08.585209 p:6012 t:7868 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:41:08.585209 p:6012 t:7868 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T15:41:08.585209 p:6012 t:7868 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T15:41:08.585209 p:6012 t:7868 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T15:41:08.585209 p:6012 t:7868 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T15:41:08.585209 p:6012 t:7868 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T15:41:08.585209 p:6012 t:7868 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:41:08.585209 p:6012 t:7868 [LOG] > #uManager plugins: 94
2014-04-02T15:41:08.585209 p:6012 t:7868 [LOG] > interface found: javax.swing.event.ChangeListener
2014-04-02T15:41:08.585209 p:6012 t:7868 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:41:08.585209 p:6012 t:7868 [LOG] > interface found: java.awt.event.ItemListener
2014-04-02T15:41:08.585209 p:6012 t:7868 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:41:08.585209 p:6012 t:7868 [LOG] > interface found: java.awt.event.ItemListener
2014-04-02T15:41:08.585209 p:6012 t:7868 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:41:08.585209 p:6012 t:7868 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:41:08.585209 p:6012 t:7868 [LOG] > interface found: javax.swing.event.ChangeListener
2014-04-02T15:41:08.585209 p:6012 t:7868 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:41:08.585209 p:6012 t:7868 [LOG] > interface found: java.awt.event.MouseListener
2014-04-02T15:41:08.585209 p:6012 t:7868 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:41:08.585209 p:6012 t:7868 [LOG] > interface found: java.lang.Runnable
2014-04-02T15:41:08.585209 p:6012 t:7868 [LOG] > interface found: spim.progacq.AcqOutputHandler
2014-04-02T15:41:08.585209 p:6012 t:7868 [LOG] > interface found: java.lang.Thread$UncaughtExceptionHandler
2014-04-02T15:41:08.585209 p:6012 t:7868 [LOG] > interface found: spim.progacq.AcqOutputHandler
2014-04-02T15:41:08.585209 p:6012 t:7868 [LOG] > interface found: java.awt.event.MouseListener
2014-04-02T15:41:08.585209 p:6012 t:7868 [LOG] > interface found: spim.progacq.AcqOutputHandler
2014-04-02T15:41:08.585209 p:6012 t:7868 [LOG] > interface found: spim.progacq.AcqOutputHandler
2014-04-02T15:41:08.585209 p:6012 t:7868 [LOG] > interface found: spim.progacq.AntiDrift$Callback
2014-04-02T15:41:08.585209 p:6012 t:7868 [LOG] > interface found: java.lang.Runnable
2014-04-02T15:41:08.585209 p:6012 t:7868 [LOG] > interface found: java.lang.Runnable
2014-04-02T15:41:08.585209 p:6012 t:7868 [LOG] > interface found: javax.swing.event.ChangeListener
2014-04-02T15:41:08.585209 p:6012 t:7868 [LOG] > interface found: java.awt.event.KeyListener
2014-04-02T15:41:08.585209 p:6012 t:7868 [LOG] > interface found: java.lang.Iterable
2014-04-02T15:41:08.585209 p:6012 t:7868 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:41:08.585209 p:6012 t:7868 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:41:08.585209 p:6012 t:7868 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:41:08.585209 p:6012 t:7868 [LOG] > interface found: java.awt.event.ItemListener
2014-04-02T15:41:08.585209 p:6012 t:7868 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:41:08.585209 p:6012 t:7868 [LOG] > interface found: java.awt.event.ItemListener
2014-04-02T15:41:08.585209 p:6012 t:7868 [LOG] > interface found: java.awt.event.ItemListener
2014-04-02T15:41:08.585209 p:6012 t:7868 [LOG] > interface found: java.awt.event.ItemListener
2014-04-02T15:41:08.585209 p:6012 t:7868 [LOG] > interface found: java.awt.event.ItemListener
2014-04-02T15:41:08.585209 p:6012 t:7868 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:41:08.585209 p:6012 t:7868 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:41:08.585209 p:6012 t:7868 [LOG] > interface found: java.util.Comparator
2014-04-02T15:41:08.585209 p:6012 t:7868 [LOG] > interface found: spim.progacq.AntiDrift$Factory
2014-04-02T15:41:08.585209 p:6012 t:7868 [LOG] > interface found: spim.progacq.AntiDrift$Factory
2014-04-02T15:41:08.585209 p:6012 t:7868 [LOG] > interface found: spim.progacq.AntiDrift$Factory
2014-04-02T15:41:08.585209 p:6012 t:7868 [LOG] > interface found: spim.progacq.ProgrammaticAcquisitor$AcqProgressCallback
2014-04-02T15:41:08.585209 p:6012 t:7868 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:41:08.585209 p:6012 t:7868 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:41:08.585209 p:6012 t:7868 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:41:08.585209 p:6012 t:7868 [LOG] > interface found: spim.SPIMAutoCalibrator$RunnableWRet
2014-04-02T15:41:08.585209 p:6012 t:7868 [LOG] > interface found: java.lang.Runnable
2014-04-02T15:41:08.600809 p:6012 t:7868 [LOG] > Attempting to install autofocus plugin Autofocus
2014-04-02T15:41:08.600809 p:6012 t:7868 [LOG] > Attempting to install autofocus plugin AutofocusDuo
2014-04-02T15:41:08.600809 p:6012 t:7868 [LOG] > Attempting to install autofocus plugin AutofocusTB
2014-04-02T15:41:08.600809 p:6012 t:7868 [LOG] > Attempting to install autofocus plugin OughtaFocus
2014-04-02T15:41:09.848811 p:6012 t:1944 [dbg] Will set property: "Core"-"Initialize" = "0"
2014-04-02T15:41:09.848811 p:6012 t:1944 [LOG] All devices unloaded.
2014-04-02T15:41:09.848811 p:6012 t:1944 [dbg] > Notification for Device: Core Property: Initialize changed to value: 0
2014-04-02T15:41:09.848811 p:6012 t:1944 [dbg] Did set property: "Core"-"Initialize" = "0"
2014-04-02T15:41:09.848811 p:6012 t:1944 [LOG] Device COM3 loaded from SerialManager and labeled as COM3
2014-04-02T15:41:09.848811 p:6012 t:1944 [LOG] Error occurred. Device MMCore::loadDevice. Failed to load device adapter "Cobolt" from "C:\Users\User\Desktop\OpenSPIM.app\mm\win32\mmgr_dal_Cobolt.dll"
2014-04-02T15:41:09.848811 p:6012 t:1944 [LOG] Device HamamatsuHam_DCAM loaded from HamamatsuHam and labeled as OrcaFlash
2014-04-02T15:41:10.379212 p:6012 t:1944 [LOG] Device Picard Twister loaded from PicardStage and labeled as Picard Twister
2014-04-02T15:41:10.379212 p:6012 t:1944 [LOG] Device Picard Z Stage loaded from PicardStage and labeled as Picard Z Stage
2014-04-02T15:41:10.379212 p:6012 t:1944 [LOG] Device Picard XY Stage loaded from PicardStage and labeled as Picard XY Stage
2014-04-02T15:41:10.379212 p:6012 t:1944 [dbg] Will set property: "Cobolt"-"Max Power" = "60.0000"
2014-04-02T15:41:10.379212 p:6012 t:1944 [dbg] Will set property: "Cobolt"-"Port" = "COM3"
2014-04-02T15:41:10.379212 p:6012 t:1944 [dbg] Will set property: "Picard Twister"-"Serial Number" = "37"
2014-04-02T15:41:10.394812 p:6012 t:1944 [dbg] Did set property: "Picard Twister"-"Serial Number" = "37"
2014-04-02T15:41:10.394812 p:6012 t:1944 [dbg] Will set property: "Picard Z Stage"-"Serial Number" = "140"
2014-04-02T15:41:10.410412 p:6012 t:1944 [dbg] Did set property: "Picard Z Stage"-"Serial Number" = "140"
2014-04-02T15:41:10.410412 p:6012 t:1944 [dbg] Will set property: "Picard XY Stage"-"Serial Number (X)" = "139"
2014-04-02T15:41:10.426012 p:6012 t:1944 [dbg] Did set property: "Picard XY Stage"-"Serial Number (X)" = "139"
2014-04-02T15:41:10.426012 p:6012 t:1944 [dbg] Will set property: "Picard XY Stage"-"Serial Number (Y)" = "141"
2014-04-02T15:41:10.457212 p:6012 t:1944 [dbg] Did set property: "Picard XY Stage"-"Serial Number (Y)" = "141"
2014-04-02T15:41:10.457212 p:6012 t:1944 [dbg] Will set property: "Picard XY Stage"-"X-Max" = "8000"
2014-04-02T15:41:10.457212 p:6012 t:1944 [dbg] Did set property: "Picard XY Stage"-"X-Max" = "8000"
2014-04-02T15:41:10.457212 p:6012 t:1944 [dbg] Will set property: "Picard XY Stage"-"X-Min" = "1"
2014-04-02T15:41:10.457212 p:6012 t:1944 [dbg] Did set property: "Picard XY Stage"-"X-Min" = "1"
2014-04-02T15:41:10.457212 p:6012 t:1944 [dbg] Will set property: "Picard XY Stage"-"Y-Max" = "8000"
2014-04-02T15:41:10.457212 p:6012 t:1944 [dbg] Did set property: "Picard XY Stage"-"Y-Max" = "8000"
2014-04-02T15:41:10.457212 p:6012 t:1944 [dbg] Will set property: "Picard XY Stage"-"Y-Min" = "1"
2014-04-02T15:41:10.457212 p:6012 t:1944 [dbg] Did set property: "Picard XY Stage"-"Y-Min" = "1"
2014-04-02T15:41:10.457212 p:6012 t:1944 [dbg] Will set property: "COM3"-"AnswerTimeout" = "500.0000"
2014-04-02T15:41:10.457212 p:6012 t:1944 [dbg] Did set property: "COM3"-"AnswerTimeout" = "500.0000"
2014-04-02T15:41:10.457212 p:6012 t:1944 [dbg] Will set property: "COM3"-"BaudRate" = "115200"
2014-04-02T15:41:10.457212 p:6012 t:1944 [dbg] Did set property: "COM3"-"BaudRate" = "115200"
2014-04-02T15:41:10.457212 p:6012 t:1944 [dbg] Will set property: "COM3"-"DelayBetweenCharsMs" = "0.0000"
2014-04-02T15:41:10.457212 p:6012 t:1944 [dbg] Did set property: "COM3"-"DelayBetweenCharsMs" = "0.0000"
2014-04-02T15:41:10.457212 p:6012 t:1944 [dbg] Will set property: "COM3"-"Handshaking" = "Off"
2014-04-02T15:41:10.457212 p:6012 t:1944 [dbg] Did set property: "COM3"-"Handshaking" = "Off"
2014-04-02T15:41:10.457212 p:6012 t:1944 [dbg] Will set property: "COM3"-"Parity" = "None"
2014-04-02T15:41:10.457212 p:6012 t:1944 [dbg] Did set property: "COM3"-"Parity" = "None"
2014-04-02T15:41:10.457212 p:6012 t:1944 [dbg] Will set property: "COM3"-"StopBits" = "1"
2014-04-02T15:41:10.457212 p:6012 t:1944 [dbg] Did set property: "COM3"-"StopBits" = "1"
2014-04-02T15:41:10.457212 p:6012 t:1944 [dbg] Will set property: "COM3"-"Verbose" = "1"
2014-04-02T15:41:10.457212 p:6012 t:1944 [dbg] Did set property: "COM3"-"Verbose" = "1"
2014-04-02T15:41:10.457212 p:6012 t:1944 [dbg] Will set property: "Core"-"Initialize" = "1"
2014-04-02T15:41:10.457212 p:6012 t:1944 [LOG] Starting initialization sequence for 5 devices...
2014-04-02T15:41:10.457212 p:6012 t:1944 [LOG] Device COM3 message: Access is denied
2014-04-02T15:41:10.457212 p:6012 t:1944 [LOG] Error occurred. Device COM3. Error in device COM3: Unknown error in the device. 
, file MMCore.cpp, line 885
2014-04-02T15:41:10.457212 p:6012 t:1944 [dbg] Will set property: "Core"-"Camera" = "OrcaFlash"
2014-04-02T15:41:10.457212 p:6012 t:1944 [dbg] Will set property: "Core"-"Shutter" = "Cobolt"
2014-04-02T15:41:10.457212 p:6012 t:1944 [dbg] Will set property: "Core"-"Focus" = "Picard Z Stage"
2014-04-02T15:41:10.457212 p:6012 t:1944 [dbg] Will set property: "Core"-"AutoShutter" = "1"
2014-04-02T15:41:10.457212 p:6012 t:1944 [LOG] Auto shutter ON.
2014-04-02T15:41:10.457212 p:6012 t:1944 [dbg] > Notification for Device: Core Property: AutoShutter changed to value: 1
2014-04-02T15:41:10.457212 p:6012 t:1944 [dbg] Did set property: "Core"-"AutoShutter" = "1"
2014-04-02T15:41:10.457212 p:6012 t:1944 [LOG] > 
java.lang.Exception: Line 8: Device,Cobolt,Cobolt,Cobolt
Failed to load device adapter "Cobolt" from "C:\Users\User\Desktop\OpenSPIM.app\mm\win32\mmgr_dal_Cobolt.dll"

Line 15: Property,Cobolt,Max Power,60.0000
No device with label "Cobolt"

Line 16: Property,Cobolt,Port,COM3
No device with label "Cobolt"

Line 38: Property,Core,Initialize,1
Error in device COM3: Unknown error in the device. 

Line 43: Property,Core,Camera,OrcaFlash
Cannot set Core property Camera to invalid value "OrcaFlash"

Line 44: Property,Core,Shutter,Cobolt
Cannot set Core property Shutter to invalid value "Cobolt"

Line 45: Property,Core,Focus,Picard Z Stage
Cannot set Core property Focus to invalid value "Picard Z Stage"

 in Thread[AWT-EventQueue-0,6,main]
  at mmcorej.MMCoreJJNI.CMMCore_loadSystemConfiguration(Native Method)
  at mmcorej.CMMCore.loadSystemConfiguration(CMMCore.java:341)
  at org.micromanager.MMStudioMainFrame.loadSystemConfiguration(MMStudioMainFrame.java:3289)
  at org.micromanager.MMStudioMainFrame.access$2400(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48.windowOpened(MMStudioMainFrame.java:1514)
  at java.awt.AWTEventMulticaster.windowOpened(AWTEventMulticaster.java:322)
  at java.awt.Window.processWindowEvent(Window.java:1862)
  at javax.swing.JFrame.processWindowEvent(JFrame.java:274)
  at java.awt.Window.processEvent(Window.java:1823)
  at java.awt.Component.dispatchEventImpl(Component.java:4652)
  at java.awt.Container.dispatchEventImpl(Container.java:2099)
  at java.awt.Window.dispatchEventImpl(Window.java:2478)
  at java.awt.Component.dispatchEvent(Component.java:4482)
  at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:644)
  at java.awt.EventQueue.access$000(EventQueue.java:85)
  at java.awt.EventQueue$1.run(EventQueue.java:603)
  at java.awt.EventQueue$1.run(EventQueue.java:601)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
  at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
  at java.awt.EventQueue$2.run(EventQueue.java:617)
  at java.awt.EventQueue$2.run(EventQueue.java:615)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
  at java.awt.EventQueue.dispatchEvent(EventQueue.java:614)
  at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269)
  at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184)
  at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174)
  at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169)
  at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161)
  at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
2014-04-02T15:41:16.541222 p:6012 t:1944 [LOG] System state cache updated.
2014-04-02T15:41:16.541222 p:6012 t:1944 [LOG] > Startup script file (C:\Users\User\Desktop\OpenSPIM.app/MMStartup.bsh) not present.
2014-04-02T15:41:23.826435 p:6012 t:1944 [LOG] > [UI] JMenu "Plugins" clicked in MMStudioMainFrame.
2014-04-02T15:41:24.278836 p:6012 t:1944 [LOG] > [UI] JMenu "Plugins" clicked in MMStudioMainFrame.
2014-04-02T15:41:24.778037 p:6012 t:1944 [LOG] > [UI] JMenu "Plugins" clicked in MMStudioMainFrame.
2014-04-02T15:43:20.382546 p:5676 t:1656 [LOG] -------->>
2014-04-02T15:43:20.382546 p:5956 t:4528 [LOG] -------->>
2014-04-02T15:43:20.398146 p:5676 t:1656 [LOG] Core session started by User on OPENSPIM01
2014-04-02T15:43:20.398146 p:5676 t:1656 [LOG] Debug logging disabled
2014-04-02T15:43:20.398146 p:5676 t:1656 [LOG] Debug logging enabled
2014-04-02T15:43:20.398146 p:5676 t:1656 [LOG] > MM Studio version: 1.4.x dev
2014-04-02T15:43:20.398146 p:5676 t:1656 [LOG] > MMCore version 2.3.2
2014-04-02T15:43:20.398146 p:5676 t:1656 [LOG] > Device API version 57, Module API version 8
2014-04-02T15:43:20.398146 p:5676 t:1656 [LOG] > Operating System: Windows 7 (x86) 6.1
2014-04-02T15:43:20.398146 p:5676 t:1656 [LOG] > JVM: Java HotSpot(TM) Client VM, version 1.6.0_24, 32-bit
2014-04-02T15:43:20.398146 p:5676 t:1656 [dbg] Circular buffer set to 25 MB.
2014-04-02T15:43:20.398146 p:5956 t:4528 [LOG] Core session started by User on OPENSPIM01
2014-04-02T15:43:20.398146 p:5956 t:4528 [LOG] Debug logging disabled
2014-04-02T15:43:20.398146 p:5956 t:4528 [LOG] Debug logging enabled
2014-04-02T15:43:20.398146 p:5956 t:4528 [LOG] > MM Studio version: 1.4.x dev
2014-04-02T15:43:20.398146 p:5956 t:4528 [LOG] > MMCore version 2.3.2
2014-04-02T15:43:20.398146 p:5956 t:4528 [LOG] > Device API version 57, Module API version 8
2014-04-02T15:43:20.398146 p:5956 t:4528 [LOG] > Operating System: Windows 7 (x86) 6.1
2014-04-02T15:43:20.398146 p:5956 t:4528 [LOG] > JVM: Java HotSpot(TM) Client VM, version 1.6.0_24, 32-bit
2014-04-02T15:43:20.398146 p:5956 t:4528 [dbg] Circular buffer set to 25 MB.
2014-04-02T15:43:20.460546 p:5956 t:6236 [LOG] > Failed to load spim.FitPlane$1 java.lang.ClassNotFoundException: org.apache.commons.math.analysis.MultivariateRealFunction
java.lang.NoClassDefFoundError: org/apache/commons/math/analysis/MultivariateRealFunction in Thread[Plugin loading,6,main]
  at java.lang.ClassLoader.defineClass1(Native Method)
  at java.lang.ClassLoader.defineClassCond(ClassLoader.java:632)
  at java.lang.ClassLoader.defineClass(ClassLoader.java:616)
  at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:141)
  at java.net.URLClassLoader.defineClass(URLClassLoader.java:283)
  at java.net.URLClassLoader.access$000(URLClassLoader.java:58)
  at java.net.URLClassLoader$1.run(URLClassLoader.java:197)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.analysis.MultivariateRealFunction
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.ClassLoader.defineClass1(Native Method)
  at java.lang.ClassLoader.defineClassCond(ClassLoader.java:632)
  at java.lang.ClassLoader.defineClass(ClassLoader.java:616)
  at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:141)
  at java.net.URLClassLoader.defineClass(URLClassLoader.java:283)
  at java.net.URLClassLoader.access$000(URLClassLoader.java:58)
  at java.net.URLClassLoader$1.run(URLClassLoader.java:197)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:43:20.460546 p:5956 t:6236 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T15:43:20.460546 p:5956 t:6236 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:43:20.460546 p:5956 t:6236 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:43:20.460546 p:5956 t:6236 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:43:20.460546 p:5956 t:6236 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:43:20.460546 p:5956 t:6236 [LOG] > java.lang.ClassLoader.defineClass1(Native Method)
2014-04-02T15:43:20.460546 p:5956 t:6236 [LOG] > java.lang.ClassLoader.defineClassCond(ClassLoader.java:632)
2014-04-02T15:43:20.460546 p:5956 t:6236 [LOG] > java.lang.ClassLoader.defineClass(ClassLoader.java:616)
2014-04-02T15:43:20.460546 p:5956 t:6236 [LOG] > java.security.SecureClassLoader.defineClass(SecureClassLoader.java:141)
2014-04-02T15:43:20.460546 p:5956 t:6236 [LOG] > java.net.URLClassLoader.defineClass(URLClassLoader.java:283)
2014-04-02T15:43:20.460546 p:5956 t:6236 [LOG] > java.net.URLClassLoader.access$000(URLClassLoader.java:58)
2014-04-02T15:43:20.460546 p:5956 t:6236 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:197)
2014-04-02T15:43:20.460546 p:5676 t:6240 [LOG] > Failed to load spim.FitPlane$1 java.lang.ClassNotFoundException: org.apache.commons.math.analysis.MultivariateRealFunction
java.lang.NoClassDefFoundError: org/apache/commons/math/analysis/MultivariateRealFunction in Thread[Plugin loading,6,main]
  at java.lang.ClassLoader.defineClass1(Native Method)
  at java.lang.ClassLoader.defineClassCond(ClassLoader.java:632)
  at java.lang.ClassLoader.defineClass(ClassLoader.java:616)
  at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:141)
  at java.net.URLClassLoader.defineClass(URLClassLoader.java:283)
  at java.net.URLClassLoader.access$000(URLClassLoader.java:58)
  at java.net.URLClassLoader$1.run(URLClassLoader.java:197)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.analysis.MultivariateRealFunction
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.ClassLoader.defineClass1(Native Method)
  at java.lang.ClassLoader.defineClassCond(ClassLoader.java:632)
  at java.lang.ClassLoader.defineClass(ClassLoader.java:616)
  at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:141)
  at java.net.URLClassLoader.defineClass(URLClassLoader.java:283)
  at java.net.URLClassLoader.access$000(URLClassLoader.java:58)
  at java.net.URLClassLoader$1.run(URLClassLoader.java:197)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:43:20.460546 p:5676 t:6240 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T15:43:20.460546 p:5676 t:6240 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:43:20.460546 p:5676 t:6240 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:43:20.460546 p:5676 t:6240 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:43:20.460546 p:5676 t:6240 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:43:20.460546 p:5676 t:6240 [LOG] > java.lang.ClassLoader.defineClass1(Native Method)
2014-04-02T15:43:20.460546 p:5676 t:6240 [LOG] > java.lang.ClassLoader.defineClassCond(ClassLoader.java:632)
2014-04-02T15:43:20.460546 p:5676 t:6240 [LOG] > java.lang.ClassLoader.defineClass(ClassLoader.java:616)
2014-04-02T15:43:20.460546 p:5676 t:6240 [LOG] > java.security.SecureClassLoader.defineClass(SecureClassLoader.java:141)
2014-04-02T15:43:20.460546 p:5676 t:6240 [LOG] > java.net.URLClassLoader.defineClass(URLClassLoader.java:283)
2014-04-02T15:43:20.460546 p:5676 t:6240 [LOG] > java.net.URLClassLoader.access$000(URLClassLoader.java:58)
2014-04-02T15:43:20.460546 p:5676 t:6240 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:197)
2014-04-02T15:43:20.460546 p:5676 t:6240 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:43:20.460546 p:5676 t:6240 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:43:20.460546 p:5676 t:6240 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:43:20.460546 p:5676 t:6240 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:43:20.460546 p:5676 t:6240 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T15:43:20.460546 p:5676 t:6240 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T15:43:20.460546 p:5676 t:6240 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T15:43:20.460546 p:5676 t:6240 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T15:43:20.460546 p:5676 t:6240 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T15:43:20.460546 p:5676 t:6240 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:43:20.460546 p:5676 t:6240 [LOG] > Failed to load spim.FitPlane java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
java.lang.NoClassDefFoundError: org/apache/commons/math/geometry/Vector in Thread[Plugin loading,6,main]
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:43:20.460546 p:5676 t:6240 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T15:43:20.460546 p:5676 t:6240 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:43:20.460546 p:5676 t:6240 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:43:20.460546 p:5676 t:6240 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:43:20.460546 p:5676 t:6240 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:43:20.460546 p:5676 t:6240 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T15:43:20.460546 p:5676 t:6240 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T15:43:20.460546 p:5676 t:6240 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T15:43:20.460546 p:5676 t:6240 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T15:43:20.460546 p:5676 t:6240 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T15:43:20.460546 p:5676 t:6240 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:43:20.460546 p:5676 t:6240 [LOG] > Failed to load spim.FitSphere$1 java.lang.ClassNotFoundException: org.apache.commons.math.analysis.MultivariateRealFunction
java.lang.NoClassDefFoundError: org/apache/commons/math/analysis/MultivariateRealFunction in Thread[Plugin loading,6,main]
  at java.lang.ClassLoader.defineClass1(Native Method)
  at java.lang.ClassLoader.defineClassCond(ClassLoader.java:632)
  at java.lang.ClassLoader.defineClass(ClassLoader.java:616)
  at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:141)
  at java.net.URLClassLoader.defineClass(URLClassLoader.java:283)
  at java.net.URLClassLoader.access$000(URLClassLoader.java:58)
  at java.net.URLClassLoader$1.run(URLClassLoader.java:197)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.analysis.MultivariateRealFunction
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.ClassLoader.defineClass1(Native Method)
  at java.lang.ClassLoader.defineClassCond(ClassLoader.java:632)
  at java.lang.ClassLoader.defineClass(ClassLoader.java:616)
  at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:141)
  at java.net.URLClassLoader.defineClass(URLClassLoader.java:283)
  at java.net.URLClassLoader.access$000(URLClassLoader.java:58)
  at java.net.URLClassLoader$1.run(URLClassLoader.java:197)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:43:20.460546 p:5676 t:6240 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T15:43:20.460546 p:5676 t:6240 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:43:20.460546 p:5676 t:6240 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:43:20.460546 p:5676 t:6240 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:43:20.460546 p:5676 t:6240 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:43:20.460546 p:5676 t:6240 [LOG] > java.lang.ClassLoader.defineClass1(Native Method)
2014-04-02T15:43:20.460546 p:5676 t:6240 [LOG] > java.lang.ClassLoader.defineClassCond(ClassLoader.java:632)
2014-04-02T15:43:20.460546 p:5676 t:6240 [LOG] > java.lang.ClassLoader.defineClass(ClassLoader.java:616)
2014-04-02T15:43:20.460546 p:5676 t:6240 [LOG] > java.security.SecureClassLoader.defineClass(SecureClassLoader.java:141)
2014-04-02T15:43:20.460546 p:5676 t:6240 [LOG] > java.net.URLClassLoader.defineClass(URLClassLoader.java:283)
2014-04-02T15:43:20.460546 p:5676 t:6240 [LOG] > java.net.URLClassLoader.access$000(URLClassLoader.java:58)
2014-04-02T15:43:20.460546 p:5676 t:6240 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:197)
2014-04-02T15:43:20.460546 p:5676 t:6240 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:43:20.460546 p:5676 t:6240 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:43:20.460546 p:5676 t:6240 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:43:20.460546 p:5676 t:6240 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:43:20.460546 p:5676 t:6240 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T15:43:20.460546 p:5676 t:6240 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T15:43:20.460546 p:5676 t:6240 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T15:43:20.460546 p:5676 t:6240 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T15:43:20.460546 p:5676 t:6240 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T15:43:20.460546 p:5676 t:6240 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:43:20.476146 p:5676 t:6240 [LOG] > Failed to load spim.FitSphere java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
java.lang.NoClassDefFoundError: org/apache/commons/math/geometry/Vector in Thread[Plugin loading,6,main]
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:43:20.476146 p:5676 t:6240 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T15:43:20.476146 p:5676 t:6240 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:43:20.476146 p:5676 t:6240 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:43:20.476146 p:5676 t:6240 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:43:20.476146 p:5676 t:6240 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:43:20.476146 p:5676 t:6240 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T15:43:20.476146 p:5676 t:6240 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T15:43:20.476146 p:5676 t:6240 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T15:43:20.476146 p:5676 t:6240 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T15:43:20.476146 p:5676 t:6240 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T15:43:20.476146 p:5676 t:6240 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:43:20.460546 p:5956 t:6236 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:43:20.460546 p:5956 t:6236 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:43:20.460546 p:5956 t:6236 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:43:20.460546 p:5956 t:6236 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:43:20.460546 p:5956 t:6236 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T15:43:20.460546 p:5956 t:6236 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T15:43:20.460546 p:5956 t:6236 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T15:43:20.460546 p:5956 t:6236 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T15:43:20.460546 p:5956 t:6236 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T15:43:20.460546 p:5956 t:6236 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:43:20.460546 p:5956 t:6236 [LOG] > Failed to load spim.FitPlane java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
java.lang.NoClassDefFoundError: org/apache/commons/math/geometry/Vector in Thread[Plugin loading,6,main]
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:43:20.460546 p:5956 t:6236 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T15:43:20.460546 p:5956 t:6236 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:43:20.460546 p:5956 t:6236 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:43:20.460546 p:5956 t:6236 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:43:20.460546 p:5956 t:6236 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:43:20.460546 p:5956 t:6236 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T15:43:20.460546 p:5956 t:6236 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T15:43:20.460546 p:5956 t:6236 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T15:43:20.460546 p:5956 t:6236 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T15:43:20.460546 p:5956 t:6236 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T15:43:20.460546 p:5956 t:6236 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:43:20.476146 p:5956 t:6236 [LOG] > Failed to load spim.FitSphere$1 java.lang.ClassNotFoundException: org.apache.commons.math.analysis.MultivariateRealFunction
java.lang.NoClassDefFoundError: org/apache/commons/math/analysis/MultivariateRealFunction in Thread[Plugin loading,6,main]
  at java.lang.ClassLoader.defineClass1(Native Method)
  at java.lang.ClassLoader.defineClassCond(ClassLoader.java:632)
  at java.lang.ClassLoader.defineClass(ClassLoader.java:616)
  at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:141)
  at java.net.URLClassLoader.defineClass(URLClassLoader.java:283)
  at java.net.URLClassLoader.access$000(URLClassLoader.java:58)
  at java.net.URLClassLoader$1.run(URLClassLoader.java:197)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.analysis.MultivariateRealFunction
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.ClassLoader.defineClass1(Native Method)
  at java.lang.ClassLoader.defineClassCond(ClassLoader.java:632)
  at java.lang.ClassLoader.defineClass(ClassLoader.java:616)
  at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:141)
  at java.net.URLClassLoader.defineClass(URLClassLoader.java:283)
  at java.net.URLClassLoader.access$000(URLClassLoader.java:58)
  at java.net.URLClassLoader$1.run(URLClassLoader.java:197)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:43:20.476146 p:5956 t:6236 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T15:43:20.476146 p:5956 t:6236 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:43:20.476146 p:5956 t:6236 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:43:20.476146 p:5956 t:6236 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:43:20.476146 p:5956 t:6236 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:43:20.476146 p:5956 t:6236 [LOG] > java.lang.ClassLoader.defineClass1(Native Method)
2014-04-02T15:43:20.476146 p:5956 t:6236 [LOG] > java.lang.ClassLoader.defineClassCond(ClassLoader.java:632)
2014-04-02T15:43:20.476146 p:5956 t:6236 [LOG] > java.lang.ClassLoader.defineClass(ClassLoader.java:616)
2014-04-02T15:43:20.476146 p:5956 t:6236 [LOG] > java.security.SecureClassLoader.defineClass(SecureClassLoader.java:141)
2014-04-02T15:43:20.476146 p:5956 t:6236 [LOG] > java.net.URLClassLoader.defineClass(URLClassLoader.java:283)
2014-04-02T15:43:20.476146 p:5956 t:6236 [LOG] > java.net.URLClassLoader.access$000(URLClassLoader.java:58)
2014-04-02T15:43:20.476146 p:5956 t:6236 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:197)
2014-04-02T15:43:20.476146 p:5956 t:6236 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:43:20.476146 p:5956 t:6236 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:43:20.476146 p:5956 t:6236 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:43:20.476146 p:5956 t:6236 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:43:20.476146 p:5956 t:6236 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T15:43:20.476146 p:5956 t:6236 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T15:43:20.476146 p:5956 t:6236 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T15:43:20.476146 p:5956 t:6236 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T15:43:20.476146 p:5956 t:6236 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T15:43:20.476146 p:5956 t:6236 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:43:20.476146 p:5956 t:6236 [LOG] > Failed to load spim.FitSphere java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
java.lang.NoClassDefFoundError: org/apache/commons/math/geometry/Vector in Thread[Plugin loading,6,main]
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:43:20.476146 p:5956 t:6236 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T15:43:20.476146 p:5956 t:6236 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:43:20.476146 p:5956 t:6236 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:43:20.476146 p:5956 t:6236 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:43:20.476146 p:5956 t:6236 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:43:20.476146 p:5956 t:6236 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T15:43:20.476146 p:5956 t:6236 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T15:43:20.476146 p:5956 t:6236 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T15:43:20.476146 p:5956 t:6236 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T15:43:20.476146 p:5956 t:6236 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T15:43:20.476146 p:5956 t:6236 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:43:20.491746 p:5676 t:6240 [LOG] > Failed to load spim.PixelSizeCalibrator$GridLineFinder$1 java.lang.ClassNotFoundException: org.apache.commons.math.analysis.MultivariateRealFunction
java.lang.NoClassDefFoundError: org/apache/commons/math/analysis/MultivariateRealFunction in Thread[Plugin loading,6,main]
  at java.lang.ClassLoader.defineClass1(Native Method)
  at java.lang.ClassLoader.defineClassCond(ClassLoader.java:632)
  at java.lang.ClassLoader.defineClass(ClassLoader.java:616)
  at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:141)
  at java.net.URLClassLoader.defineClass(URLClassLoader.java:283)
  at java.net.URLClassLoader.access$000(URLClassLoader.java:58)
  at java.net.URLClassLoader$1.run(URLClassLoader.java:197)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.analysis.MultivariateRealFunction
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.ClassLoader.defineClass1(Native Method)
  at java.lang.ClassLoader.defineClassCond(ClassLoader.java:632)
  at java.lang.ClassLoader.defineClass(ClassLoader.java:616)
  at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:141)
  at java.net.URLClassLoader.defineClass(URLClassLoader.java:283)
  at java.net.URLClassLoader.access$000(URLClassLoader.java:58)
  at java.net.URLClassLoader$1.run(URLClassLoader.java:197)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:43:20.491746 p:5676 t:6240 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T15:43:20.491746 p:5676 t:6240 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:43:20.491746 p:5676 t:6240 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:43:20.491746 p:5676 t:6240 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:43:20.491746 p:5676 t:6240 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:43:20.491746 p:5676 t:6240 [LOG] > java.lang.ClassLoader.defineClass1(Native Method)
2014-04-02T15:43:20.491746 p:5676 t:6240 [LOG] > java.lang.ClassLoader.defineClassCond(ClassLoader.java:632)
2014-04-02T15:43:20.491746 p:5676 t:6240 [LOG] > java.lang.ClassLoader.defineClass(ClassLoader.java:616)
2014-04-02T15:43:20.491746 p:5676 t:6240 [LOG] > java.security.SecureClassLoader.defineClass(SecureClassLoader.java:141)
2014-04-02T15:43:20.491746 p:5676 t:6240 [LOG] > java.net.URLClassLoader.defineClass(URLClassLoader.java:283)
2014-04-02T15:43:20.491746 p:5676 t:6240 [LOG] > java.net.URLClassLoader.access$000(URLClassLoader.java:58)
2014-04-02T15:43:20.491746 p:5676 t:6240 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:197)
2014-04-02T15:43:20.491746 p:5676 t:6240 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:43:20.491746 p:5676 t:6240 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:43:20.491746 p:5676 t:6240 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:43:20.491746 p:5676 t:6240 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:43:20.491746 p:5676 t:6240 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T15:43:20.491746 p:5676 t:6240 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T15:43:20.491746 p:5676 t:6240 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T15:43:20.491746 p:5676 t:6240 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T15:43:20.491746 p:5676 t:6240 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T15:43:20.491746 p:5676 t:6240 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:43:20.507346 p:5676 t:6240 [LOG] > Failed to load spim.PixelSizeCalibrator$GridLineFinder java.lang.ClassNotFoundException: org.apache.commons.math.optimization.direct.AbstractSimplex
java.lang.NoClassDefFoundError: org/apache/commons/math/optimization/direct/AbstractSimplex in Thread[Plugin loading,6,main]
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.optimization.direct.AbstractSimplex
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:43:20.507346 p:5676 t:6240 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T15:43:20.507346 p:5676 t:6240 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:43:20.507346 p:5676 t:6240 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:43:20.507346 p:5676 t:6240 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:43:20.507346 p:5676 t:6240 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:43:20.507346 p:5676 t:6240 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T15:43:20.507346 p:5676 t:6240 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T15:43:20.507346 p:5676 t:6240 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T15:43:20.507346 p:5676 t:6240 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T15:43:20.507346 p:5676 t:6240 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T15:43:20.507346 p:5676 t:6240 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:43:20.538546 p:5676 t:6240 [LOG] > Failed to load spim.progacq.IntensityMeanAntiDrift java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
java.lang.NoClassDefFoundError: org/apache/commons/math/geometry/Vector in Thread[Plugin loading,6,main]
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:43:20.538546 p:5676 t:6240 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T15:43:20.538546 p:5676 t:6240 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:43:20.538546 p:5676 t:6240 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:43:20.538546 p:5676 t:6240 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:43:20.538546 p:5676 t:6240 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:43:20.538546 p:5676 t:6240 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T15:43:20.538546 p:5676 t:6240 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T15:43:20.538546 p:5676 t:6240 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T15:43:20.538546 p:5676 t:6240 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T15:43:20.538546 p:5676 t:6240 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T15:43:20.538546 p:5676 t:6240 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
g.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:43:20.538546 p:5956 t:6236 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T15:43:20.538546 p:5956 t:6236 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:43:20.538546 p:5956 t:6236 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:43:20.538546 p:5956 t:6236 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:43:20.538546 p:5956 t:6236 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:43:20.538546 p:5956 t:6236 [LOG] > java.lang.ClassLoader.defineClass1(Native Method)
2014-04-02T15:43:20.538546 p:5956 t:6236 [LOG] > java.lang.ClassLoader.defineClassCond(ClassLoader.java:632)
2014-04-02T15:43:20.538546 p:5956 t:6236 [LOG] > java.lang.ClassLoader.defineClass(ClassLoader.java:616)
2014-04-02T15:43:20.538546 p:5956 t:6236 [LOG] > java.security.SecureClassLoader.defineClass(SecureClassLoader.java:141)
2014-04-02T15:43:20.538546 p:5956 t:6236 [LOG] > java.net.URLClassLoader.defineClass(URLClassLoader.java:283)
2014-04-02T15:43:20.538546 p:5956 t:6236 [LOG] > java.net.URLClassLoader.access$000(URLClassLoader.java:58)
2014-04-02T15:43:20.538546 p:5956 t:6236 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:197)
2014-04-02T15:43:20.538546 p:5956 t:6236 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:43:20.538546 p:5956 t:6236 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:43:20.538546 p:5956 t:6236 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:43:20.538546 p:5956 t:6236 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:43:20.538546 p:5956 t:6236 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T15:43:20.538546 p:5956 t:6236 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T15:43:20.538546 p:5956 t:6236 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T15:43:20.538546 p:5956 t:6236 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T15:43:20.538546 p:5956 t:6236 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T15:43:20.538546 p:5956 t:6236 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:43:20.538546 p:5956 t:6236 [LOG] > Failed to load spim.PixelSizeCalibrator$GridLineFinder java.lang.ClassNotFoundException: org.apache.commons.math.optimization.direct.AbstractSimplex
java.lang.NoClassDefFoundError: org/apache/commons/math/optimization/direct/AbstractSimplex in Thread[Plugin loading,6,main]
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.optimization.direct.AbstractSimplex
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:43:20.538546 p:5956 t:6236 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T15:43:20.538546 p:5956 t:6236 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:43:20.538546 p:5956 t:6236 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:43:20.538546 p:5956 t:6236 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:43:20.538546 p:5956 t:6236 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:43:20.538546 p:5956 t:6236 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T15:43:20.538546 p:5956 t:6236 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T15:43:20.538546 p:5956 t:6236 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T15:43:20.538546 p:5956 t:6236 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T15:43:20.538546 p:5956 t:6236 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T15:43:20.538546 p:5956 t:6236 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:43:20.569746 p:5676 t:6240 [LOG] > Failed to load spim.progacq.ProjDiffAntiDrift$1 java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
java.lang.NoClassDefFoundError: org/apache/commons/math/geometry/Vector in Thread[Plugin loading,6,main]
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:43:20.569746 p:5676 t:6240 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T15:43:20.569746 p:5676 t:6240 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:43:20.569746 p:5676 t:6240 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:43:20.569746 p:5676 t:6240 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:43:20.569746 p:5676 t:6240 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:43:20.569746 p:5676 t:6240 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T15:43:20.569746 p:5676 t:6240 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T15:43:20.569746 p:5676 t:6240 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T15:43:20.569746 p:5676 t:6240 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T15:43:20.569746 p:5676 t:6240 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T15:43:20.569746 p:5676 t:6240 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:43:20.569746 p:5676 t:6240 [LOG] > Failed to load spim.progacq.ProjDiffAntiDrift$AdjusterGUI java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
java.lang.NoClassDefFoundError: org/apache/commons/math/geometry/Vector in Thread[Plugin loading,6,main]
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:43:20.569746 p:5676 t:6240 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T15:43:20.569746 p:5676 t:6240 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:43:20.569746 p:5676 t:6240 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:43:20.569746 p:5676 t:6240 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:43:20.569746 p:5676 t:6240 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:43:20.569746 p:5676 t:6240 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T15:43:20.569746 p:5676 t:6240 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T15:43:20.569746 p:5676 t:6240 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T15:43:20.569746 p:5676 t:6240 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T15:43:20.569746 p:5676 t:6240 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T15:43:20.569746 p:5676 t:6240 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:43:20.585346 p:5676 t:6240 [LOG] > Failed to load spim.progacq.ProjDiffAntiDrift java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
java.lang.NoClassDefFoundError: org/apache/commons/math/geometry/Vector in Thread[Plugin loading,6,main]
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:43:20.585346 p:5676 t:6240 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T15:43:20.585346 p:5676 t:6240 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:43:20.585346 p:5676 t:6240 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:43:20.585346 p:5676 t:6240 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:43:20.585346 p:5676 t:6240 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:43:20.585346 p:5676 t:6240 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T15:43:20.585346 p:5676 t:6240 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T15:43:20.585346 p:5676 t:6240 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T15:43:20.585346 p:5676 t:6240 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T15:43:20.585346 p:5676 t:6240 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T15:43:20.585346 p:5676 t:6240 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:43:20.616546 p:5956 t:6236 [LOG] > Failed to load spim.progacq.IntensityMeanAntiDrift java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
java.lang.NoClassDefFoundError: org/apache/commons/math/geometry/Vector in Thread[Plugin loading,6,main]
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:43:20.616546 p:5956 t:6236 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T15:43:20.616546 p:5956 t:6236 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:43:20.616546 p:5956 t:6236 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:43:20.616546 p:5956 t:6236 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:43:20.616546 p:5956 t:6236 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:43:20.616546 p:5956 t:6236 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T15:43:20.616546 p:5956 t:6236 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T15:43:20.616546 p:5956 t:6236 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T15:43:20.616546 p:5956 t:6236 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T15:43:20.616546 p:5956 t:6236 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T15:43:20.616546 p:5956 t:6236 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:43:20.647746 p:5956 t:6236 [LOG] > Failed to load spim.progacq.ProjDiffAntiDrift$1 java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
java.lang.NoClassDefFoundError: org/apache/commons/math/geometry/Vector in Thread[Plugin loading,6,main]
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:43:20.647746 p:5956 t:6236 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T15:43:20.647746 p:5956 t:6236 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:43:20.647746 p:5956 t:6236 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:43:20.647746 p:5956 t:6236 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:43:20.647746 p:5956 t:6236 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:43:20.647746 p:5956 t:6236 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T15:43:20.647746 p:5956 t:6236 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T15:43:20.647746 p:5956 t:6236 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T15:43:20.647746 p:5956 t:6236 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T15:43:20.647746 p:5956 t:6236 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T15:43:20.647746 p:5956 t:6236 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:43:20.647746 p:5956 t:6236 [LOG] > Failed to load spim.progacq.ProjDiffAntiDrift$AdjusterGUI java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
java.lang.NoClassDefFoundError: org/apache/commons/math/geometry/Vector in Thread[Plugin loading,6,main]
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:43:20.647746 p:5956 t:6236 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T15:43:20.647746 p:5956 t:6236 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:43:20.647746 p:5956 t:6236 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:43:20.647746 p:5956 t:6236 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:43:20.647746 p:5956 t:6236 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:43:20.647746 p:5956 t:6236 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T15:43:20.647746 p:5956 t:6236 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T15:43:20.647746 p:5956 t:6236 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T15:43:20.647746 p:5956 t:6236 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T15:43:20.647746 p:5956 t:6236 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T15:43:20.647746 p:5956 t:6236 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:43:20.647746 p:5956 t:6236 [LOG] > Failed to load spim.progacq.ProjDiffAntiDrift java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
java.lang.NoClassDefFoundError: org/apache/commons/math/geometry/Vector in Thread[Plugin loading,6,main]
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:43:20.647746 p:5956 t:6236 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T15:43:20.647746 p:5956 t:6236 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:43:20.647746 p:5956 t:6236 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:43:20.647746 p:5956 t:6236 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:43:20.647746 p:5956 t:6236 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:43:20.647746 p:5956 t:6236 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T15:43:20.647746 p:5956 t:6236 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T15:43:20.647746 p:5956 t:6236 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T15:43:20.647746 p:5956 t:6236 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T15:43:20.647746 p:5956 t:6236 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T15:43:20.647746 p:5956 t:6236 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:43:20.647746 p:5676 t:6240 [LOG] > Failed to load spim.SPIMAcquisition java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
java.lang.NoClassDefFoundError: org/apache/commons/math/geometry/Vector in Thread[Plugin loading,6,main]
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:43:20.647746 p:5676 t:6240 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T15:43:20.647746 p:5676 t:6240 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:43:20.647746 p:5676 t:6240 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:43:20.647746 p:5676 t:6240 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:43:20.647746 p:5676 t:6240 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:43:20.647746 p:5676 t:6240 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T15:43:20.647746 p:5676 t:6240 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T15:43:20.647746 p:5676 t:6240 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T15:43:20.647746 p:5676 t:6240 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T15:43:20.647746 p:5676 t:6240 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T15:43:20.647746 p:5676 t:6240 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:43:20.663346 p:5676 t:6240 [LOG] > Failed to load spim.SPIMAutoCalibrator java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
java.lang.NoClassDefFoundError: org/apache/commons/math/geometry/Vector in Thread[Plugin loading,6,main]
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:43:20.663346 p:5676 t:6240 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T15:43:20.663346 p:5676 t:6240 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:43:20.663346 p:5676 t:6240 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:43:20.663346 p:5676 t:6240 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:43:20.663346 p:5676 t:6240 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:43:20.663346 p:5676 t:6240 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T15:43:20.663346 p:5676 t:6240 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T15:43:20.663346 p:5676 t:6240 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T15:43:20.663346 p:5676 t:6240 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T15:43:20.663346 p:5676 t:6240 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T15:43:20.663346 p:5676 t:6240 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:43:20.663346 p:5676 t:6240 [LOG] > Failed to load spim.SPIMManualCalibrator java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
java.lang.NoClassDefFoundError: org/apache/commons/math/geometry/Vector in Thread[Plugin loading,6,main]
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:43:20.663346 p:5676 t:6240 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T15:43:20.663346 p:5676 t:6240 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:43:20.663346 p:5676 t:6240 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:43:20.663346 p:5676 t:6240 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:43:20.663346 p:5676 t:6240 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:43:20.663346 p:5676 t:6240 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T15:43:20.663346 p:5676 t:6240 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T15:43:20.663346 p:5676 t:6240 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T15:43:20.663346 p:5676 t:6240 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T15:43:20.663346 p:5676 t:6240 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T15:43:20.663346 p:5676 t:6240 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:43:20.663346 p:5676 t:6240 [LOG] > #uManager plugins: 94
2014-04-02T15:43:20.663346 p:5676 t:6240 [LOG] > interface found: javax.swing.event.ChangeListener
2014-04-02T15:43:20.663346 p:5676 t:6240 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:43:20.663346 p:5676 t:6240 [LOG] > interface found: java.awt.event.ItemListener
2014-04-02T15:43:20.663346 p:5676 t:6240 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:43:20.663346 p:5676 t:6240 [LOG] > interface found: java.awt.event.ItemListener
2014-04-02T15:43:20.663346 p:5676 t:6240 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:43:20.663346 p:5676 t:6240 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:43:20.663346 p:5676 t:6240 [LOG] > interface found: javax.swing.event.ChangeListener
2014-04-02T15:43:20.663346 p:5676 t:6240 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:43:20.663346 p:5676 t:6240 [LOG] > interface found: java.awt.event.MouseListener
2014-04-02T15:43:20.663346 p:5676 t:6240 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:43:20.663346 p:5676 t:6240 [LOG] > interface found: java.lang.Runnable
2014-04-02T15:43:20.663346 p:5676 t:6240 [LOG] > interface found: spim.progacq.AcqOutputHandler
2014-04-02T15:43:20.663346 p:5676 t:6240 [LOG] > interface found: java.lang.Thread$UncaughtExceptionHandler
2014-04-02T15:43:20.663346 p:5676 t:6240 [LOG] > interface found: spim.progacq.AcqOutputHandler
2014-04-02T15:43:20.663346 p:5676 t:6240 [LOG] > interface found: java.awt.event.MouseListener
2014-04-02T15:43:20.663346 p:5676 t:6240 [LOG] > interface found: spim.progacq.AcqOutputHandler
2014-04-02T15:43:20.663346 p:5676 t:6240 [LOG] > interface found: spim.progacq.AcqOutputHandler
2014-04-02T15:43:20.663346 p:5676 t:6240 [LOG] > interface found: spim.progacq.AntiDrift$Callback
2014-04-02T15:43:20.663346 p:5676 t:6240 [LOG] > interface found: java.lang.Runnable
2014-04-02T15:43:20.663346 p:5676 t:6240 [LOG] > interface found: java.lang.Runnable
2014-04-02T15:43:20.678946 p:5676 t:6240 [LOG] > interface found: javax.swing.event.ChangeListener
2014-04-02T15:43:20.678946 p:5676 t:6240 [LOG] > interface found: java.awt.event.KeyListener
2014-04-02T15:43:20.678946 p:5676 t:6240 [LOG] > interface found: java.lang.Iterable
2014-04-02T15:43:20.678946 p:5676 t:6240 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:43:20.678946 p:5676 t:6240 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:43:20.678946 p:5676 t:6240 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:43:20.678946 p:5676 t:6240 [LOG] > interface found: java.awt.event.ItemListener
2014-04-02T15:43:20.678946 p:5676 t:6240 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:43:20.678946 p:5676 t:6240 [LOG] > interface found: java.awt.event.ItemListener
2014-04-02T15:43:20.678946 p:5676 t:6240 [LOG] > interface found: java.awt.event.ItemListener
2014-04-02T15:43:20.678946 p:5676 t:6240 [LOG] > interface found: java.awt.event.ItemListener
2014-04-02T15:43:20.678946 p:5676 t:6240 [LOG] > interface found: java.awt.event.ItemListener
2014-04-02T15:43:20.678946 p:5676 t:6240 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:43:20.678946 p:5676 t:6240 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:43:20.678946 p:5676 t:6240 [LOG] > interface found: java.util.Comparator
2014-04-02T15:43:20.678946 p:5676 t:6240 [LOG] > interface found: spim.progacq.AntiDrift$Factory
2014-04-02T15:43:20.678946 p:5676 t:6240 [LOG] > interface found: spim.progacq.AntiDrift$Factory
2014-04-02T15:43:20.678946 p:5676 t:6240 [LOG] > interface found: spim.progacq.AntiDrift$Factory
2014-04-02T15:43:20.678946 p:5676 t:6240 [LOG] > interface found: spim.progacq.ProgrammaticAcquisitor$AcqProgressCallback
2014-04-02T15:43:20.678946 p:5676 t:6240 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:43:20.678946 p:5676 t:6240 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:43:20.678946 p:5676 t:6240 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:43:20.678946 p:5676 t:6240 [LOG] > interface found: spim.SPIMAutoCalibrator$RunnableWRet
2014-04-02T15:43:20.678946 p:5676 t:6240 [LOG] > interface found: java.lang.Runnable
2014-04-02T15:43:20.710146 p:5956 t:6236 [LOG] > Failed to load spim.SPIMAcquisition java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
java.lang.NoClassDefFoundError: org/apache/commons/math/geometry/Vector in Thread[Plugin loading,6,main]
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:43:20.710146 p:5956 t:6236 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T15:43:20.710146 p:5956 t:6236 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:43:20.710146 p:5956 t:6236 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:43:20.710146 p:5956 t:6236 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:43:20.710146 p:5956 t:6236 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:43:20.710146 p:5956 t:6236 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T15:43:20.710146 p:5956 t:6236 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T15:43:20.710146 p:5956 t:6236 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T15:43:20.710146 p:5956 t:6236 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T15:43:20.710146 p:5956 t:6236 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T15:43:20.710146 p:5956 t:6236 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:43:20.725746 p:5956 t:6236 [LOG] > Failed to load spim.SPIMAutoCalibrator java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
java.lang.NoClassDefFoundError: org/apache/commons/math/geometry/Vector in Thread[Plugin loading,6,main]
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:43:20.725746 p:5956 t:6236 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T15:43:20.725746 p:5956 t:6236 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:43:20.725746 p:5956 t:6236 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:43:20.725746 p:5956 t:6236 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:43:20.725746 p:5956 t:6236 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:43:20.725746 p:5956 t:6236 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T15:43:20.725746 p:5956 t:6236 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T15:43:20.725746 p:5956 t:6236 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T15:43:20.725746 p:5956 t:6236 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T15:43:20.725746 p:5956 t:6236 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T15:43:20.725746 p:5956 t:6236 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:43:20.725746 p:5956 t:6236 [LOG] > Failed to load spim.SPIMManualCalibrator java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
java.lang.NoClassDefFoundError: org/apache/commons/math/geometry/Vector in Thread[Plugin loading,6,main]
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:43:20.725746 p:5956 t:6236 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T15:43:20.725746 p:5956 t:6236 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:43:20.725746 p:5956 t:6236 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:43:20.725746 p:5956 t:6236 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:43:20.725746 p:5956 t:6236 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:43:20.725746 p:5956 t:6236 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T15:43:20.725746 p:5956 t:6236 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T15:43:20.725746 p:5956 t:6236 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T15:43:20.725746 p:5956 t:6236 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T15:43:20.725746 p:5956 t:6236 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T15:43:20.725746 p:5956 t:6236 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:43:20.725746 p:5956 t:6236 [LOG] > #uManager plugins: 94
2014-04-02T15:43:20.725746 p:5956 t:6236 [LOG] > interface found: javax.swing.event.ChangeListener
2014-04-02T15:43:20.725746 p:5956 t:6236 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:43:20.725746 p:5956 t:6236 [LOG] > interface found: java.awt.event.ItemListener
2014-04-02T15:43:20.725746 p:5956 t:6236 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:43:20.725746 p:5956 t:6236 [LOG] > interface found: java.awt.event.ItemListener
2014-04-02T15:43:20.725746 p:5956 t:6236 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:43:20.725746 p:5956 t:6236 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:43:20.725746 p:5956 t:6236 [LOG] > interface found: javax.swing.event.ChangeListener
2014-04-02T15:43:20.725746 p:5956 t:6236 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:43:20.725746 p:5956 t:6236 [LOG] > interface found: java.awt.event.MouseListener
2014-04-02T15:43:20.725746 p:5956 t:6236 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:43:20.725746 p:5956 t:6236 [LOG] > interface found: java.lang.Runnable
2014-04-02T15:43:20.725746 p:5956 t:6236 [LOG] > interface found: spim.progacq.AcqOutputHandler
2014-04-02T15:43:20.725746 p:5956 t:6236 [LOG] > interface found: java.lang.Thread$UncaughtExceptionHandler
2014-04-02T15:43:20.725746 p:5956 t:6236 [LOG] > interface found: spim.progacq.AcqOutputHandler
2014-04-02T15:43:20.725746 p:5956 t:6236 [LOG] > interface found: java.awt.event.MouseListener
2014-04-02T15:43:20.725746 p:5956 t:6236 [LOG] > interface found: spim.progacq.AcqOutputHandler
2014-04-02T15:43:20.725746 p:5956 t:6236 [LOG] > interface found: spim.progacq.AcqOutputHandler
2014-04-02T15:43:20.725746 p:5956 t:6236 [LOG] > interface found: spim.progacq.AntiDrift$Callback
2014-04-02T15:43:20.725746 p:5956 t:6236 [LOG] > interface found: java.lang.Runnable
2014-04-02T15:43:20.725746 p:5956 t:6236 [LOG] > interface found: java.lang.Runnable
2014-04-02T15:43:20.725746 p:5956 t:6236 [LOG] > interface found: javax.swing.event.ChangeListener
2014-04-02T15:43:20.725746 p:5956 t:6236 [LOG] > interface found: java.awt.event.KeyListener
2014-04-02T15:43:20.725746 p:5956 t:6236 [LOG] > interface found: java.lang.Iterable
2014-04-02T15:43:20.725746 p:5956 t:6236 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:43:20.725746 p:5956 t:6236 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:43:20.725746 p:5956 t:6236 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:43:20.725746 p:5956 t:6236 [LOG] > interface found: java.awt.event.ItemListener
2014-04-02T15:43:20.725746 p:5956 t:6236 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:43:20.725746 p:5956 t:6236 [LOG] > interface found: java.awt.event.ItemListener
2014-04-02T15:43:20.725746 p:5956 t:6236 [LOG] > interface found: java.awt.event.ItemListener
2014-04-02T15:43:20.725746 p:5956 t:6236 [LOG] > interface found: java.awt.event.ItemListener
2014-04-02T15:43:20.725746 p:5956 t:6236 [LOG] > interface found: java.awt.event.ItemListener
2014-04-02T15:43:20.725746 p:5956 t:6236 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:43:20.725746 p:5956 t:6236 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:43:20.725746 p:5956 t:6236 [LOG] > interface found: java.util.Comparator
2014-04-02T15:43:20.725746 p:5956 t:6236 [LOG] > interface found: spim.progacq.AntiDrift$Factory
2014-04-02T15:43:20.725746 p:5956 t:6236 [LOG] > interface found: spim.progacq.AntiDrift$Factory
2014-04-02T15:43:20.725746 p:5956 t:6236 [LOG] > interface found: spim.progacq.AntiDrift$Factory
2014-04-02T15:43:20.725746 p:5956 t:6236 [LOG] > interface found: spim.progacq.ProgrammaticAcquisitor$AcqProgressCallback
2014-04-02T15:43:20.725746 p:5956 t:6236 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:43:20.725746 p:5956 t:6236 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:43:20.725746 p:5956 t:6236 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:43:20.725746 p:5956 t:6236 [LOG] > interface found: spim.SPIMAutoCalibrator$RunnableWRet
2014-04-02T15:43:20.725746 p:5956 t:6236 [LOG] > interface found: java.lang.Runnable
2014-04-02T15:43:20.756946 p:5956 t:6236 [LOG] > Attempting to install autofocus plugin Autofocus
2014-04-02T15:43:20.756946 p:5956 t:6236 [LOG] > Attempting to install autofocus plugin AutofocusDuo
2014-04-02T15:43:20.756946 p:5956 t:6236 [LOG] > Attempting to install autofocus plugin AutofocusTB
2014-04-02T15:43:20.756946 p:5956 t:6236 [LOG] > Attempting to install autofocus plugin OughtaFocus
2014-04-02T15:43:23.549351 p:5676 t:1656 [LOG] > [UI] JComboBox clicked in MMIntroDlg.
2014-04-02T15:43:25.780155 p:5676 t:1656 [LOG] > [UI] JComboBox clicked in MMIntroDlg.
2014-04-02T15:43:27.480558 p:5676 t:1656 [dbg] Will set property: "Core"-"Initialize" = "0"
2014-04-02T15:43:27.480558 p:5676 t:1656 [LOG] All devices unloaded.
2014-04-02T15:43:27.480558 p:5676 t:1656 [dbg] > Notification for Device: Core Property: Initialize changed to value: 0
2014-04-02T15:43:27.480558 p:5676 t:1656 [dbg] Did set property: "Core"-"Initialize" = "0"
2014-04-02T15:43:27.558558 p:5676 t:1656 [LOG] Device COM3 loaded from SerialManager and labeled as COM3
2014-04-02T15:43:27.620958 p:5676 t:1656 [LOG] Error occurred. Device MMCore::loadDevice. Failed to load device adapter "Cobolt" from "C:\Users\User\Desktop\OpenSPIM.app\mm\win32\mmgr_dal_Cobolt.dll"
2014-04-02T15:43:28.120159 p:5676 t:1656 [LOG] Device HamamatsuHam_DCAM loaded from HamamatsuHam and labeled as OrcaFlash
2014-04-02T15:43:28.884561 p:5676 t:1656 [LOG] Device Picard Twister loaded from PicardStage and labeled as Picard Twister
2014-04-02T15:43:28.884561 p:5676 t:1656 [LOG] Device Picard Z Stage loaded from PicardStage and labeled as Picard Z Stage
2014-04-02T15:43:28.884561 p:5676 t:1656 [LOG] Device Picard XY Stage loaded from PicardStage and labeled as Picard XY Stage
2014-04-02T15:43:28.884561 p:5676 t:1656 [dbg] Will set property: "Cobolt"-"Max Power" = "60.0000"
2014-04-02T15:43:28.884561 p:5676 t:1656 [dbg] Will set property: "Cobolt"-"Port" = "COM3"
2014-04-02T15:43:28.884561 p:5676 t:1656 [dbg] Will set property: "Picard Twister"-"Serial Number" = "37"
2014-04-02T15:43:28.915761 p:5676 t:1656 [dbg] Did set property: "Picard Twister"-"Serial Number" = "37"
2014-04-02T15:43:28.915761 p:5676 t:1656 [dbg] Will set property: "Picard Z Stage"-"Serial Number" = "140"
2014-04-02T15:43:28.931361 p:5676 t:1656 [dbg] Did set property: "Picard Z Stage"-"Serial Number" = "140"
2014-04-02T15:43:28.931361 p:5676 t:1656 [dbg] Will set property: "Picard XY Stage"-"Serial Number (X)" = "139"
2014-04-02T15:43:28.931361 p:5676 t:1656 [dbg] Did set property: "Picard XY Stage"-"Serial Number (X)" = "139"
2014-04-02T15:43:28.931361 p:5676 t:1656 [dbg] Will set property: "Picard XY Stage"-"Serial Number (Y)" = "141"
2014-04-02T15:43:28.962561 p:5676 t:1656 [dbg] Did set property: "Picard XY Stage"-"Serial Number (Y)" = "141"
2014-04-02T15:43:28.962561 p:5676 t:1656 [dbg] Will set property: "Picard XY Stage"-"X-Max" = "8000"
2014-04-02T15:43:28.962561 p:5676 t:1656 [dbg] Did set property: "Picard XY Stage"-"X-Max" = "8000"
2014-04-02T15:43:28.962561 p:5676 t:1656 [dbg] Will set property: "Picard XY Stage"-"X-Min" = "1"
2014-04-02T15:43:28.962561 p:5676 t:1656 [dbg] Did set property: "Picard XY Stage"-"X-Min" = "1"
2014-04-02T15:43:28.962561 p:5676 t:1656 [dbg] Will set property: "Picard XY Stage"-"Y-Max" = "8000"
2014-04-02T15:43:28.962561 p:5676 t:1656 [dbg] Did set property: "Picard XY Stage"-"Y-Max" = "8000"
2014-04-02T15:43:28.962561 p:5676 t:1656 [dbg] Will set property: "Picard XY Stage"-"Y-Min" = "1"
2014-04-02T15:43:28.962561 p:5676 t:1656 [dbg] Did set property: "Picard XY Stage"-"Y-Min" = "1"
2014-04-02T15:43:28.962561 p:5676 t:1656 [dbg] Will set property: "COM3"-"AnswerTimeout" = "500.0000"
2014-04-02T15:43:28.962561 p:5676 t:1656 [dbg] Did set property: "COM3"-"AnswerTimeout" = "500.0000"
2014-04-02T15:43:28.962561 p:5676 t:1656 [dbg] Will set property: "COM3"-"BaudRate" = "115200"
2014-04-02T15:43:28.962561 p:5676 t:1656 [dbg] Did set property: "COM3"-"BaudRate" = "115200"
2014-04-02T15:43:28.962561 p:5676 t:1656 [dbg] Will set property: "COM3"-"DelayBetweenCharsMs" = "0.0000"
2014-04-02T15:43:28.962561 p:5676 t:1656 [dbg] Did set property: "COM3"-"DelayBetweenCharsMs" = "0.0000"
2014-04-02T15:43:28.962561 p:5676 t:1656 [dbg] Will set property: "COM3"-"Handshaking" = "Off"
2014-04-02T15:43:28.962561 p:5676 t:1656 [dbg] Did set property: "COM3"-"Handshaking" = "Off"
2014-04-02T15:43:28.962561 p:5676 t:1656 [dbg] Will set property: "COM3"-"Parity" = "None"
2014-04-02T15:43:28.962561 p:5676 t:1656 [dbg] Did set property: "COM3"-"Parity" = "None"
2014-04-02T15:43:28.962561 p:5676 t:1656 [dbg] Will set property: "COM3"-"StopBits" = "1"
2014-04-02T15:43:28.962561 p:5676 t:1656 [dbg] Did set property: "COM3"-"StopBits" = "1"
2014-04-02T15:43:28.962561 p:5676 t:1656 [dbg] Will set property: "COM3"-"Verbose" = "1"
2014-04-02T15:43:28.962561 p:5676 t:1656 [dbg] Did set property: "COM3"-"Verbose" = "1"
2014-04-02T15:43:28.962561 p:5676 t:1656 [dbg] Will set property: "Core"-"Initialize" = "1"
2014-04-02T15:43:28.962561 p:5676 t:1656 [LOG] Starting initialization sequence for 5 devices...
2014-04-02T15:43:28.978161 p:5676 t:1656 [dbg] Device COM3 debug message: Attempting to set baud of COM3 to 115200
2014-04-02T15:43:28.978161 p:5676 t:1656 [dbg] Device COM3 debug message: Attempting to set flow of COM3 to none
2014-04-02T15:43:28.993761 p:5676 t:1656 [dbg] Device COM3 debug message: Attempting to set parity of COM3 to none
2014-04-02T15:43:28.993761 p:5676 t:1656 [dbg] Device COM3 debug message: Attempting to set stopBits of COM3 to 1
2014-04-02T15:43:29.024961 p:5676 t:1656 [LOG] Device COM3 initialized.
2014-04-02T15:43:32.430337 p:5676 t:1656 [LOG] Device OrcaFlash set as default camera.
2014-04-02T15:43:32.430337 p:5676 t:1656 [LOG] Device OrcaFlash initialized.
2014-04-02T15:43:32.436337 p:5676 t:1656 [LOG] Device Picard Twister initialized.
2014-04-02T15:43:32.456338 p:5676 t:1656 [LOG] Device Picard Z Stage initialized.
2014-04-02T15:43:32.492340 p:5676 t:1656 [LOG] Device Picard XY Stage set as default xyStage.
2014-04-02T15:43:32.492340 p:5676 t:1656 [LOG] Device Picard XY Stage initialized.
2014-04-02T15:43:32.492340 p:5676 t:1656 [dbg] > Notification for Device: Core Property: Initialize changed to value: 1
2014-04-02T15:43:32.492340 p:5676 t:1656 [dbg] Did set property: "Core"-"Initialize" = "1"
2014-04-02T15:43:32.492340 p:5676 t:1656 [dbg] Will set property: "Core"-"Camera" = "OrcaFlash"
2014-04-02T15:43:32.492340 p:5676 t:1656 [LOG] Camera device set to OrcaFlash
2014-04-02T15:43:32.492340 p:5676 t:1656 [dbg] > Notification for Device: Core Property: Camera changed to value: OrcaFlash
2014-04-02T15:43:32.492340 p:5676 t:1656 [dbg] Did set property: "Core"-"Camera" = "OrcaFlash"
2014-04-02T15:43:32.492340 p:5676 t:1656 [dbg] Will set property: "Core"-"Shutter" = "Cobolt"
2014-04-02T15:43:32.492340 p:5676 t:1656 [dbg] Will set property: "Core"-"Focus" = "Picard Z Stage"
2014-04-02T15:43:32.492340 p:5676 t:1656 [LOG] Focus device set to Picard Z Stage
2014-04-02T15:43:32.492340 p:5676 t:1656 [dbg] > Notification for Device: Core Property: Focus changed to value: Picard Z Stage
2014-04-02T15:43:32.492340 p:5676 t:1656 [dbg] Did set property: "Core"-"Focus" = "Picard Z Stage"
2014-04-02T15:43:32.492340 p:5676 t:1656 [dbg] Will set property: "Core"-"AutoShutter" = "1"
2014-04-02T15:43:32.493340 p:5676 t:1656 [LOG] Auto shutter ON.
2014-04-02T15:43:32.493340 p:5676 t:1656 [dbg] > Notification for Device: Core Property: AutoShutter changed to value: 1
2014-04-02T15:43:32.493340 p:5676 t:1656 [dbg] Did set property: "Core"-"AutoShutter" = "1"
2014-04-02T15:43:32.494340 p:5676 t:1656 [LOG] > 
java.lang.Exception: Line 8: Device,Cobolt,Cobolt,Cobolt
Failed to load device adapter "Cobolt" from "C:\Users\User\Desktop\OpenSPIM.app\mm\win32\mmgr_dal_Cobolt.dll"

Line 15: Property,Cobolt,Max Power,60.0000
No device with label "Cobolt"

Line 16: Property,Cobolt,Port,COM3
No device with label "Cobolt"

Line 44: Property,Core,Shutter,Cobolt
Cannot set Core property Shutter to invalid value "Cobolt"

 in Thread[AWT-EventQueue-0,6,main]
  at mmcorej.MMCoreJJNI.CMMCore_loadSystemConfiguration(Native Method)
  at mmcorej.CMMCore.loadSystemConfiguration(CMMCore.java:341)
  at org.micromanager.MMStudioMainFrame.loadSystemConfiguration(MMStudioMainFrame.java:3289)
  at org.micromanager.MMStudioMainFrame.access$2400(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48.windowOpened(MMStudioMainFrame.java:1514)
  at java.awt.AWTEventMulticaster.windowOpened(AWTEventMulticaster.java:322)
  at java.awt.Window.processWindowEvent(Window.java:1862)
  at javax.swing.JFrame.processWindowEvent(JFrame.java:274)
  at java.awt.Window.processEvent(Window.java:1823)
  at java.awt.Component.dispatchEventImpl(Component.java:4652)
  at java.awt.Container.dispatchEventImpl(Container.java:2099)
  at java.awt.Window.dispatchEventImpl(Window.java:2478)
  at java.awt.Component.dispatchEvent(Component.java:4482)
  at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:644)
  at java.awt.EventQueue.access$000(EventQueue.java:85)
  at java.awt.EventQueue$1.run(EventQueue.java:603)
  at java.awt.EventQueue$1.run(EventQueue.java:601)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
  at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
  at java.awt.EventQueue$2.run(EventQueue.java:617)
  at java.awt.EventQueue$2.run(EventQueue.java:615)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
  at java.awt.EventQueue.dispatchEvent(EventQueue.java:614)
  at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269)
  at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184)
  at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174)
  at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169)
  at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161)
  at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
2014-04-02T15:43:41.488855 p:5676 t:1656 [LOG] System state cache updated.
2014-04-02T15:43:41.524857 p:5676 t:1656 [LOG] > Startup script file (C:\Users\User\Desktop\OpenSPIM.app/MMStartup.bsh) not present.
2014-04-02T15:43:43.571974 p:5956 t:4528 [dbg] Will set property: "Core"-"Initialize" = "0"
2014-04-02T15:43:43.571974 p:5956 t:4528 [LOG] All devices unloaded.
2014-04-02T15:43:43.571974 p:5956 t:4528 [dbg] > Notification for Device: Core Property: Initialize changed to value: 0
2014-04-02T15:43:43.571974 p:5956 t:4528 [dbg] Did set property: "Core"-"Initialize" = "0"
2014-04-02T15:43:43.573974 p:5956 t:4528 [LOG] Device COM3 loaded from SerialManager and labeled as COM3
2014-04-02T15:43:43.574974 p:5956 t:4528 [LOG] Error occurred. Device MMCore::loadDevice. Failed to load device adapter "Cobolt" from "C:\Users\User\Desktop\OpenSPIM.app\mm\win32\mmgr_dal_Cobolt.dll"
2014-04-02T15:43:43.576974 p:5956 t:4528 [LOG] Device HamamatsuHam_DCAM loaded from HamamatsuHam and labeled as OrcaFlash
2014-04-02T15:43:44.146007 p:5956 t:4528 [LOG] Device Picard Twister loaded from PicardStage and labeled as Picard Twister
2014-04-02T15:43:44.146007 p:5956 t:4528 [LOG] Device Picard Z Stage loaded from PicardStage and labeled as Picard Z Stage
2014-04-02T15:43:44.146007 p:5956 t:4528 [LOG] Device Picard XY Stage loaded from PicardStage and labeled as Picard XY Stage
2014-04-02T15:43:44.146007 p:5956 t:4528 [dbg] Will set property: "Cobolt"-"Max Power" = "60.0000"
2014-04-02T15:43:44.146007 p:5956 t:4528 [dbg] Will set property: "Cobolt"-"Port" = "COM3"
2014-04-02T15:43:44.146007 p:5956 t:4528 [dbg] Will set property: "Picard Twister"-"Serial Number" = "37"
2014-04-02T15:43:44.148007 p:5956 t:4528 [dbg] Did set property: "Picard Twister"-"Serial Number" = "37"
2014-04-02T15:43:44.148007 p:5956 t:4528 [dbg] Will set property: "Picard Z Stage"-"Serial Number" = "140"
2014-04-02T15:43:44.168008 p:5956 t:4528 [dbg] Did set property: "Picard Z Stage"-"Serial Number" = "140"
2014-04-02T15:43:44.168008 p:5956 t:4528 [dbg] Will set property: "Picard XY Stage"-"Serial Number (X)" = "139"
2014-04-02T15:43:44.176008 p:5956 t:4528 [dbg] Did set property: "Picard XY Stage"-"Serial Number (X)" = "139"
2014-04-02T15:43:44.176008 p:5956 t:4528 [dbg] Will set property: "Picard XY Stage"-"Serial Number (Y)" = "141"
2014-04-02T15:43:44.204010 p:5956 t:4528 [dbg] Did set property: "Picard XY Stage"-"Serial Number (Y)" = "141"
2014-04-02T15:43:44.205010 p:5956 t:4528 [dbg] Will set property: "Picard XY Stage"-"X-Max" = "8000"
2014-04-02T15:43:44.205010 p:5956 t:4528 [dbg] Did set property: "Picard XY Stage"-"X-Max" = "8000"
2014-04-02T15:43:44.205010 p:5956 t:4528 [dbg] Will set property: "Picard XY Stage"-"X-Min" = "1"
2014-04-02T15:43:44.205010 p:5956 t:4528 [dbg] Did set property: "Picard XY Stage"-"X-Min" = "1"
2014-04-02T15:43:44.205010 p:5956 t:4528 [dbg] Will set property: "Picard XY Stage"-"Y-Max" = "8000"
2014-04-02T15:43:44.205010 p:5956 t:4528 [dbg] Did set property: "Picard XY Stage"-"Y-Max" = "8000"
2014-04-02T15:43:44.205010 p:5956 t:4528 [dbg] Will set property: "Picard XY Stage"-"Y-Min" = "1"
2014-04-02T15:43:44.205010 p:5956 t:4528 [dbg] Did set property: "Picard XY Stage"-"Y-Min" = "1"
2014-04-02T15:43:44.205010 p:5956 t:4528 [dbg] Will set property: "COM3"-"AnswerTimeout" = "500.0000"
2014-04-02T15:43:44.205010 p:5956 t:4528 [dbg] Did set property: "COM3"-"AnswerTimeout" = "500.0000"
2014-04-02T15:43:44.205010 p:5956 t:4528 [dbg] Will set property: "COM3"-"BaudRate" = "115200"
2014-04-02T15:43:44.205010 p:5956 t:4528 [dbg] Did set property: "COM3"-"BaudRate" = "115200"
2014-04-02T15:43:44.205010 p:5956 t:4528 [dbg] Will set property: "COM3"-"DelayBetweenCharsMs" = "0.0000"
2014-04-02T15:43:44.205010 p:5956 t:4528 [dbg] Did set property: "COM3"-"DelayBetweenCharsMs" = "0.0000"
2014-04-02T15:43:44.205010 p:5956 t:4528 [dbg] Will set property: "COM3"-"Handshaking" = "Off"
2014-04-02T15:43:44.205010 p:5956 t:4528 [dbg] Did set property: "COM3"-"Handshaking" = "Off"
2014-04-02T15:43:44.205010 p:5956 t:4528 [dbg] Will set property: "COM3"-"Parity" = "None"
2014-04-02T15:43:44.205010 p:5956 t:4528 [dbg] Did set property: "COM3"-"Parity" = "None"
2014-04-02T15:43:44.205010 p:5956 t:4528 [dbg] Will set property: "COM3"-"StopBits" = "1"
2014-04-02T15:43:44.205010 p:5956 t:4528 [dbg] Did set property: "COM3"-"StopBits" = "1"
2014-04-02T15:43:44.205010 p:5956 t:4528 [dbg] Will set property: "COM3"-"Verbose" = "1"
2014-04-02T15:43:44.205010 p:5956 t:4528 [dbg] Did set property: "COM3"-"Verbose" = "1"
2014-04-02T15:43:44.205010 p:5956 t:4528 [dbg] Will set property: "Core"-"Initialize" = "1"
2014-04-02T15:43:44.205010 p:5956 t:4528 [LOG] Starting initialization sequence for 5 devices...
2014-04-02T15:43:44.205010 p:5956 t:4528 [LOG] Device COM3 message: Access is denied
2014-04-02T15:43:44.205010 p:5956 t:4528 [LOG] Error occurred. Device COM3. Error in device COM3: Unknown error in the device. 
, file MMCore.cpp, line 885
2014-04-02T15:43:44.205010 p:5956 t:4528 [dbg] Will set property: "Core"-"Camera" = "OrcaFlash"
2014-04-02T15:43:44.205010 p:5956 t:4528 [dbg] Will set property: "Core"-"Shutter" = "Cobolt"
2014-04-02T15:43:44.205010 p:5956 t:4528 [dbg] Will set property: "Core"-"Focus" = "Picard Z Stage"
2014-04-02T15:43:44.205010 p:5956 t:4528 [dbg] Will set property: "Core"-"AutoShutter" = "1"
2014-04-02T15:43:44.205010 p:5956 t:4528 [LOG] Auto shutter ON.
2014-04-02T15:43:44.205010 p:5956 t:4528 [dbg] > Notification for Device: Core Property: AutoShutter changed to value: 1
2014-04-02T15:43:44.205010 p:5956 t:4528 [dbg] Did set property: "Core"-"AutoShutter" = "1"
2014-04-02T15:43:44.206010 p:5956 t:4528 [LOG] > 
java.lang.Exception: Line 8: Device,Cobolt,Cobolt,Cobolt
Failed to load device adapter "Cobolt" from "C:\Users\User\Desktop\OpenSPIM.app\mm\win32\mmgr_dal_Cobolt.dll"

Line 15: Property,Cobolt,Max Power,60.0000
No device with label "Cobolt"

Line 16: Property,Cobolt,Port,COM3
No device with label "Cobolt"

Line 38: Property,Core,Initialize,1
Error in device COM3: Unknown error in the device. 

Line 43: Property,Core,Camera,OrcaFlash
Cannot set Core property Camera to invalid value "OrcaFlash"

Line 44: Property,Core,Shutter,Cobolt
Cannot set Core property Shutter to invalid value "Cobolt"

Line 45: Property,Core,Focus,Picard Z Stage
Cannot set Core property Focus to invalid value "Picard Z Stage"

 in Thread[AWT-EventQueue-0,6,main]
  at mmcorej.MMCoreJJNI.CMMCore_loadSystemConfiguration(Native Method)
  at mmcorej.CMMCore.loadSystemConfiguration(CMMCore.java:341)
  at org.micromanager.MMStudioMainFrame.loadSystemConfiguration(MMStudioMainFrame.java:3289)
  at org.micromanager.MMStudioMainFrame.access$2400(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48.windowOpened(MMStudioMainFrame.java:1514)
  at java.awt.AWTEventMulticaster.windowOpened(AWTEventMulticaster.java:322)
  at java.awt.Window.processWindowEvent(Window.java:1862)
  at javax.swing.JFrame.processWindowEvent(JFrame.java:274)
  at java.awt.Window.processEvent(Window.java:1823)
  at java.awt.Component.dispatchEventImpl(Component.java:4652)
  at java.awt.Container.dispatchEventImpl(Container.java:2099)
  at java.awt.Window.dispatchEventImpl(Window.java:2478)
  at java.awt.Component.dispatchEvent(Component.java:4482)
  at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:644)
  at java.awt.EventQueue.access$000(EventQueue.java:85)
  at java.awt.EventQueue$1.run(EventQueue.java:603)
  at java.awt.EventQueue$1.run(EventQueue.java:601)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
  at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
  at java.awt.EventQueue$2.run(EventQueue.java:617)
  at java.awt.EventQueue$2.run(EventQueue.java:615)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
  at java.awt.EventQueue.dispatchEvent(EventQueue.java:614)
  at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269)
  at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184)
  at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174)
  at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169)
  at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161)
  at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
2014-04-02T15:43:46.892164 p:5956 t:4528 [LOG] System state cache updated.
2014-04-02T15:43:46.896164 p:5956 t:4528 [LOG] > Startup script file (C:\Users\User\Desktop\OpenSPIM.app/MMStartup.bsh) not present.
2014-04-02T15:43:52.876506 p:5956 t:4528 [LOG] > [UI] JComboBox "Shutter" clicked in MMStudioMainFrame.
2014-04-02T15:43:53.380535 p:5956 t:4528 [LOG] > [UI] JComboBox "Shutter" clicked in MMStudioMainFrame.
2014-04-02T15:43:55.004628 p:5956 t:4528 [LOG] > [UI] XPComboBoxButton clicked in MMStudioMainFrame.
2014-04-02T15:43:55.380649 p:5956 t:4528 [LOG] > [UI] XPComboBoxButton clicked in MMStudioMainFrame.
2014-04-02T15:43:56.477712 p:5956 t:4528 [LOG] > [UI] JMenu "Plugins" clicked in MMStudioMainFrame.
2014-04-02T15:44:03.388107 p:5676 t:1656 [LOG] > [UI] XPComboBoxButton clicked in MMStudioMainFrame.
2014-04-02T15:44:03.884136 p:5676 t:1656 [LOG] > [UI] XPComboBoxButton clicked in MMStudioMainFrame.
2014-04-02T15:44:04.476170 p:5676 t:1656 [LOG] > [UI] XPComboBoxButton clicked in MMStudioMainFrame.
2014-04-02T15:44:05.396222 p:5676 t:1656 [LOG] > [UI]  "ComboBox.list" set to "4x4" in MMStudioMainFrame.
2014-04-02T15:44:05.397222 p:5676 t:1656 [dbg] Will set property: "OrcaFlash"-"Binning" = "4x4"
2014-04-02T15:44:05.636236 p:5676 t:1656 [dbg] Did set property: "OrcaFlash"-"Binning" = "4x4"
2014-04-02T15:44:07.084319 p:5676 t:1656 [LOG] > [UI] XPComboBoxButton clicked in MMStudioMainFrame.
2014-04-02T15:44:08.580404 p:5676 t:1656 [LOG] > [UI] JMenu "Plugins" clicked in MMStudioMainFrame.
2014-04-02T15:44:12.825647 p:5676 t:1656 [dbg] Waiting for device COM3...
2014-04-02T15:44:12.825647 p:5676 t:1656 [dbg] Finished waiting.
2014-04-02T15:44:12.825647 p:5676 t:1656 [dbg] Waiting for device OrcaFlash...
2014-04-02T15:44:12.825647 p:5676 t:1656 [dbg] Finished waiting.
2014-04-02T15:44:12.825647 p:5676 t:1656 [dbg] Waiting for device Picard Twister...
2014-04-02T15:44:12.825647 p:5676 t:1656 [dbg] Finished waiting.
2014-04-02T15:44:12.825647 p:5676 t:1656 [dbg] Waiting for device Picard Z Stage...
2014-04-02T15:44:12.825647 p:5676 t:1656 [dbg] Finished waiting.
2014-04-02T15:44:12.825647 p:5676 t:1656 [dbg] Waiting for device Picard XY Stage...
2014-04-02T15:44:12.825647 p:5676 t:1656 [dbg] Finished waiting.
2014-04-02T15:44:18.812863 p:7052 t:7152 [LOG] -------->>
2014-04-02T15:44:18.812863 p:7052 t:7152 [LOG] Core session started by User on OPENSPIM01
2014-04-02T15:44:18.812863 p:7052 t:7152 [LOG] Debug logging disabled
2014-04-02T15:44:18.812863 p:7052 t:7152 [LOG] Debug logging enabled
2014-04-02T15:44:18.812863 p:7052 t:7152 [LOG] > MM Studio version: 1.4.x dev
2014-04-02T15:44:18.812863 p:7052 t:7152 [LOG] > MMCore version 2.3.2
2014-04-02T15:44:18.812863 p:7052 t:7152 [LOG] > Device API version 57, Module API version 8
2014-04-02T15:44:18.812863 p:7052 t:7152 [LOG] > Operating System: Windows 7 (x86) 6.1
2014-04-02T15:44:18.812863 p:7052 t:7152 [LOG] > JVM: Java HotSpot(TM) Client VM, version 1.6.0_24, 32-bit
2014-04-02T15:44:18.812863 p:7052 t:7152 [dbg] Circular buffer set to 25 MB.
2014-04-02T15:44:18.828464 p:7052 t:480 [LOG] > Failed to load spim.FitPlane$1 java.lang.ClassNotFoundException: org.apache.commons.math.analysis.MultivariateRealFunction
java.lang.NoClassDefFoundError: org/apache/commons/math/analysis/MultivariateRealFunction in Thread[Plugin loading,6,main]
  at java.lang.ClassLoader.defineClass1(Native Method)
  at java.lang.ClassLoader.defineClassCond(ClassLoader.java:632)
  at java.lang.ClassLoader.defineClass(ClassLoader.java:616)
  at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:141)
  at java.net.URLClassLoader.defineClass(URLClassLoader.java:283)
  at java.net.URLClassLoader.access$000(URLClassLoader.java:58)
  at java.net.URLClassLoader$1.run(URLClassLoader.java:197)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.analysis.MultivariateRealFunction
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.ClassLoader.defineClass1(Native Method)
  at java.lang.ClassLoader.defineClassCond(ClassLoader.java:632)
  at java.lang.ClassLoader.defineClass(ClassLoader.java:616)
  at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:141)
  at java.net.URLClassLoader.defineClass(URLClassLoader.java:283)
  at java.net.URLClassLoader.access$000(URLClassLoader.java:58)
  at java.net.URLClassLoader$1.run(URLClassLoader.java:197)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:44:18.828464 p:7052 t:480 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T15:44:18.828464 p:7052 t:480 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:44:18.828464 p:7052 t:480 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:44:18.828464 p:7052 t:480 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:44:18.828464 p:7052 t:480 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:44:18.828464 p:7052 t:480 [LOG] > java.lang.ClassLoader.defineClass1(Native Method)
2014-04-02T15:44:18.828464 p:7052 t:480 [LOG] > java.lang.ClassLoader.defineClassCond(ClassLoader.java:632)
2014-04-02T15:44:18.828464 p:7052 t:480 [LOG] > java.lang.ClassLoader.defineClass(ClassLoader.java:616)
2014-04-02T15:44:18.828464 p:7052 t:480 [LOG] > java.security.SecureClassLoader.defineClass(SecureClassLoader.java:141)
2014-04-02T15:44:18.828464 p:7052 t:480 [LOG] > java.net.URLClassLoader.defineClass(URLClassLoader.java:283)
2014-04-02T15:44:18.828464 p:7052 t:480 [LOG] > java.net.URLClassLoader.access$000(URLClassLoader.java:58)
2014-04-02T15:44:18.828464 p:7052 t:480 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:197)
2014-04-02T15:44:18.828464 p:7052 t:480 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:44:18.828464 p:7052 t:480 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:44:18.828464 p:7052 t:480 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:44:18.828464 p:7052 t:480 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:44:18.828464 p:7052 t:480 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T15:44:18.828464 p:7052 t:480 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T15:44:18.828464 p:7052 t:480 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T15:44:18.828464 p:7052 t:480 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T15:44:18.828464 p:7052 t:480 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T15:44:18.828464 p:7052 t:480 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:44:18.828464 p:7052 t:480 [LOG] > Failed to load spim.FitPlane java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
java.lang.NoClassDefFoundError: org/apache/commons/math/geometry/Vector in Thread[Plugin loading,6,main]
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:44:18.828464 p:7052 t:480 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T15:44:18.828464 p:7052 t:480 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:44:18.828464 p:7052 t:480 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:44:18.828464 p:7052 t:480 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:44:18.828464 p:7052 t:480 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:44:18.828464 p:7052 t:480 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T15:44:18.828464 p:7052 t:480 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T15:44:18.828464 p:7052 t:480 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T15:44:18.828464 p:7052 t:480 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T15:44:18.828464 p:7052 t:480 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T15:44:18.828464 p:7052 t:480 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:44:18.828464 p:7052 t:480 [LOG] > Failed to load spim.FitSphere$1 java.lang.ClassNotFoundException: org.apache.commons.math.analysis.MultivariateRealFunction
java.lang.NoClassDefFoundError: org/apache/commons/math/analysis/MultivariateRealFunction in Thread[Plugin loading,6,main]
  at java.lang.ClassLoader.defineClass1(Native Method)
  at java.lang.ClassLoader.defineClassCond(ClassLoader.java:632)
  at java.lang.ClassLoader.defineClass(ClassLoader.java:616)
  at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:141)
  at java.net.URLClassLoader.defineClass(URLClassLoader.java:283)
  at java.net.URLClassLoader.access$000(URLClassLoader.java:58)
  at java.net.URLClassLoader$1.run(URLClassLoader.java:197)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.analysis.MultivariateRealFunction
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.ClassLoader.defineClass1(Native Method)
  at java.lang.ClassLoader.defineClassCond(ClassLoader.java:632)
  at java.lang.ClassLoader.defineClass(ClassLoader.java:616)
  at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:141)
  at java.net.URLClassLoader.defineClass(URLClassLoader.java:283)
  at java.net.URLClassLoader.access$000(URLClassLoader.java:58)
  at java.net.URLClassLoader$1.run(URLClassLoader.java:197)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:44:18.828464 p:7052 t:480 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T15:44:18.828464 p:7052 t:480 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:44:18.828464 p:7052 t:480 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:44:18.828464 p:7052 t:480 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:44:18.828464 p:7052 t:480 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:44:18.828464 p:7052 t:480 [LOG] > java.lang.ClassLoader.defineClass1(Native Method)
2014-04-02T15:44:18.828464 p:7052 t:480 [LOG] > java.lang.ClassLoader.defineClassCond(ClassLoader.java:632)
2014-04-02T15:44:18.828464 p:7052 t:480 [LOG] > java.lang.ClassLoader.defineClass(ClassLoader.java:616)
2014-04-02T15:44:18.828464 p:7052 t:480 [LOG] > java.security.SecureClassLoader.defineClass(SecureClassLoader.java:141)
2014-04-02T15:44:18.828464 p:7052 t:480 [LOG] > java.net.URLClassLoader.defineClass(URLClassLoader.java:283)
2014-04-02T15:44:18.828464 p:7052 t:480 [LOG] > java.net.URLClassLoader.access$000(URLClassLoader.java:58)
2014-04-02T15:44:18.828464 p:7052 t:480 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:197)
2014-04-02T15:44:18.828464 p:7052 t:480 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:44:18.828464 p:7052 t:480 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:44:18.828464 p:7052 t:480 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:44:18.828464 p:7052 t:480 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:44:18.828464 p:7052 t:480 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T15:44:18.828464 p:7052 t:480 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T15:44:18.828464 p:7052 t:480 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T15:44:18.828464 p:7052 t:480 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T15:44:18.828464 p:7052 t:480 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T15:44:18.828464 p:7052 t:480 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:44:18.828464 p:7052 t:480 [LOG] > Failed to load spim.FitSphere java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
java.lang.NoClassDefFoundError: org/apache/commons/math/geometry/Vector in Thread[Plugin loading,6,main]
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:44:18.828464 p:7052 t:480 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T15:44:18.828464 p:7052 t:480 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:44:18.828464 p:7052 t:480 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:44:18.828464 p:7052 t:480 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:44:18.828464 p:7052 t:480 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:44:18.828464 p:7052 t:480 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T15:44:18.828464 p:7052 t:480 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T15:44:18.828464 p:7052 t:480 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T15:44:18.828464 p:7052 t:480 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T15:44:18.828464 p:7052 t:480 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T15:44:18.828464 p:7052 t:480 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:44:18.844064 p:7052 t:480 [LOG] > Failed to load spim.PixelSizeCalibrator$GridLineFinder$1 java.lang.ClassNotFoundException: org.apache.commons.math.analysis.MultivariateRealFunction
java.lang.NoClassDefFoundError: org/apache/commons/math/analysis/MultivariateRealFunction in Thread[Plugin loading,6,main]
  at java.lang.ClassLoader.defineClass1(Native Method)
  at java.lang.ClassLoader.defineClassCond(ClassLoader.java:632)
  at java.lang.ClassLoader.defineClass(ClassLoader.java:616)
  at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:141)
  at java.net.URLClassLoader.defineClass(URLClassLoader.java:283)
  at java.net.URLClassLoader.access$000(URLClassLoader.java:58)
  at java.net.URLClassLoader$1.run(URLClassLoader.java:197)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.analysis.MultivariateRealFunction
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.ClassLoader.defineClass1(Native Method)
  at java.lang.ClassLoader.defineClassCond(ClassLoader.java:632)
  at java.lang.ClassLoader.defineClass(ClassLoader.java:616)
  at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:141)
  at java.net.URLClassLoader.defineClass(URLClassLoader.java:283)
  at java.net.URLClassLoader.access$000(URLClassLoader.java:58)
  at java.net.URLClassLoader$1.run(URLClassLoader.java:197)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:44:18.844064 p:7052 t:480 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T15:44:18.844064 p:7052 t:480 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:44:18.844064 p:7052 t:480 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:44:18.844064 p:7052 t:480 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:44:18.844064 p:7052 t:480 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:44:18.844064 p:7052 t:480 [LOG] > java.lang.ClassLoader.defineClass1(Native Method)
2014-04-02T15:44:18.844064 p:7052 t:480 [LOG] > java.lang.ClassLoader.defineClassCond(ClassLoader.java:632)
2014-04-02T15:44:18.844064 p:7052 t:480 [LOG] > java.lang.ClassLoader.defineClass(ClassLoader.java:616)
2014-04-02T15:44:18.844064 p:7052 t:480 [LOG] > java.security.SecureClassLoader.defineClass(SecureClassLoader.java:141)
2014-04-02T15:44:18.844064 p:7052 t:480 [LOG] > java.net.URLClassLoader.defineClass(URLClassLoader.java:283)
2014-04-02T15:44:18.844064 p:7052 t:480 [LOG] > java.net.URLClassLoader.access$000(URLClassLoader.java:58)
2014-04-02T15:44:18.844064 p:7052 t:480 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:197)
2014-04-02T15:44:18.844064 p:7052 t:480 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:44:18.844064 p:7052 t:480 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:44:18.844064 p:7052 t:480 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:44:18.844064 p:7052 t:480 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:44:18.844064 p:7052 t:480 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T15:44:18.844064 p:7052 t:480 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T15:44:18.844064 p:7052 t:480 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T15:44:18.844064 p:7052 t:480 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T15:44:18.844064 p:7052 t:480 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T15:44:18.844064 p:7052 t:480 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:44:18.859664 p:7052 t:480 [LOG] > Failed to load spim.PixelSizeCalibrator$GridLineFinder java.lang.ClassNotFoundException: org.apache.commons.math.optimization.direct.AbstractSimplex
java.lang.NoClassDefFoundError: org/apache/commons/math/optimization/direct/AbstractSimplex in Thread[Plugin loading,6,main]
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.optimization.direct.AbstractSimplex
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:44:18.859664 p:7052 t:480 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T15:44:18.859664 p:7052 t:480 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:44:18.859664 p:7052 t:480 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:44:18.859664 p:7052 t:480 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:44:18.859664 p:7052 t:480 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:44:18.859664 p:7052 t:480 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T15:44:18.859664 p:7052 t:480 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T15:44:18.859664 p:7052 t:480 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T15:44:18.859664 p:7052 t:480 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T15:44:18.859664 p:7052 t:480 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T15:44:18.859664 p:7052 t:480 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:44:18.875264 p:7052 t:480 [LOG] > Failed to load spim.progacq.IntensityMeanAntiDrift java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
java.lang.NoClassDefFoundError: org/apache/commons/math/geometry/Vector in Thread[Plugin loading,6,main]
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:44:18.875264 p:7052 t:480 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T15:44:18.875264 p:7052 t:480 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:44:18.875264 p:7052 t:480 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:44:18.875264 p:7052 t:480 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:44:18.875264 p:7052 t:480 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:44:18.875264 p:7052 t:480 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T15:44:18.875264 p:7052 t:480 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T15:44:18.875264 p:7052 t:480 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T15:44:18.875264 p:7052 t:480 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T15:44:18.875264 p:7052 t:480 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T15:44:18.875264 p:7052 t:480 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:44:18.890864 p:7052 t:480 [LOG] > Failed to load spim.progacq.ProjDiffAntiDrift$1 java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
java.lang.NoClassDefFoundError: org/apache/commons/math/geometry/Vector in Thread[Plugin loading,6,main]
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:44:18.890864 p:7052 t:480 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T15:44:18.890864 p:7052 t:480 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:44:18.890864 p:7052 t:480 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:44:18.890864 p:7052 t:480 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:44:18.890864 p:7052 t:480 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:44:18.890864 p:7052 t:480 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T15:44:18.890864 p:7052 t:480 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T15:44:18.890864 p:7052 t:480 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T15:44:18.890864 p:7052 t:480 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T15:44:18.890864 p:7052 t:480 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T15:44:18.890864 p:7052 t:480 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:44:18.890864 p:7052 t:480 [LOG] > Failed to load spim.progacq.ProjDiffAntiDrift$AdjusterGUI java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
java.lang.NoClassDefFoundError: org/apache/commons/math/geometry/Vector in Thread[Plugin loading,6,main]
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:44:18.890864 p:7052 t:480 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T15:44:18.890864 p:7052 t:480 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:44:18.890864 p:7052 t:480 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:44:18.890864 p:7052 t:480 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:44:18.890864 p:7052 t:480 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:44:18.890864 p:7052 t:480 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T15:44:18.890864 p:7052 t:480 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T15:44:18.890864 p:7052 t:480 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T15:44:18.890864 p:7052 t:480 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T15:44:18.890864 p:7052 t:480 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T15:44:18.890864 p:7052 t:480 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:44:18.906464 p:7052 t:480 [LOG] > Failed to load spim.progacq.ProjDiffAntiDrift java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
java.lang.NoClassDefFoundError: org/apache/commons/math/geometry/Vector in Thread[Plugin loading,6,main]
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:44:18.906464 p:7052 t:480 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T15:44:18.906464 p:7052 t:480 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:44:18.906464 p:7052 t:480 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:44:18.906464 p:7052 t:480 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:44:18.906464 p:7052 t:480 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:44:18.906464 p:7052 t:480 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T15:44:18.906464 p:7052 t:480 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T15:44:18.906464 p:7052 t:480 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T15:44:18.906464 p:7052 t:480 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T15:44:18.906464 p:7052 t:480 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T15:44:18.906464 p:7052 t:480 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:44:18.953264 p:7052 t:480 [LOG] > Failed to load spim.SPIMAcquisition java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
java.lang.NoClassDefFoundError: org/apache/commons/math/geometry/Vector in Thread[Plugin loading,6,main]
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:44:18.953264 p:7052 t:480 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T15:44:18.953264 p:7052 t:480 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:44:18.953264 p:7052 t:480 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:44:18.953264 p:7052 t:480 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:44:18.953264 p:7052 t:480 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:44:18.953264 p:7052 t:480 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T15:44:18.953264 p:7052 t:480 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T15:44:18.953264 p:7052 t:480 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T15:44:18.953264 p:7052 t:480 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T15:44:18.953264 p:7052 t:480 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T15:44:18.953264 p:7052 t:480 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:44:18.953264 p:7052 t:480 [LOG] > Failed to load spim.SPIMAutoCalibrator java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
java.lang.NoClassDefFoundError: org/apache/commons/math/geometry/Vector in Thread[Plugin loading,6,main]
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:44:18.953264 p:7052 t:480 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T15:44:18.953264 p:7052 t:480 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:44:18.953264 p:7052 t:480 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:44:18.953264 p:7052 t:480 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:44:18.953264 p:7052 t:480 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:44:18.953264 p:7052 t:480 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T15:44:18.953264 p:7052 t:480 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T15:44:18.953264 p:7052 t:480 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T15:44:18.953264 p:7052 t:480 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T15:44:18.953264 p:7052 t:480 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T15:44:18.953264 p:7052 t:480 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:44:18.968864 p:7052 t:480 [LOG] > Failed to load spim.SPIMManualCalibrator java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
java.lang.NoClassDefFoundError: org/apache/commons/math/geometry/Vector in Thread[Plugin loading,6,main]
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:44:18.968864 p:7052 t:480 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T15:44:18.968864 p:7052 t:480 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T15:44:18.968864 p:7052 t:480 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T15:44:18.968864 p:7052 t:480 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T15:44:18.968864 p:7052 t:480 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T15:44:18.968864 p:7052 t:480 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T15:44:18.968864 p:7052 t:480 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T15:44:18.968864 p:7052 t:480 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T15:44:18.968864 p:7052 t:480 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T15:44:18.968864 p:7052 t:480 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T15:44:18.968864 p:7052 t:480 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T15:44:18.968864 p:7052 t:480 [LOG] > #uManager plugins: 94
2014-04-02T15:44:18.968864 p:7052 t:480 [LOG] > interface found: javax.swing.event.ChangeListener
2014-04-02T15:44:18.968864 p:7052 t:480 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:44:18.968864 p:7052 t:480 [LOG] > interface found: java.awt.event.ItemListener
2014-04-02T15:44:18.968864 p:7052 t:480 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:44:18.968864 p:7052 t:480 [LOG] > interface found: java.awt.event.ItemListener
2014-04-02T15:44:18.968864 p:7052 t:480 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:44:18.968864 p:7052 t:480 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:44:18.968864 p:7052 t:480 [LOG] > interface found: javax.swing.event.ChangeListener
2014-04-02T15:44:18.968864 p:7052 t:480 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:44:18.968864 p:7052 t:480 [LOG] > interface found: java.awt.event.MouseListener
2014-04-02T15:44:18.968864 p:7052 t:480 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:44:18.968864 p:7052 t:480 [LOG] > interface found: java.lang.Runnable
2014-04-02T15:44:18.968864 p:7052 t:480 [LOG] > interface found: spim.progacq.AcqOutputHandler
2014-04-02T15:44:18.968864 p:7052 t:480 [LOG] > interface found: java.lang.Thread$UncaughtExceptionHandler
2014-04-02T15:44:18.968864 p:7052 t:480 [LOG] > interface found: spim.progacq.AcqOutputHandler
2014-04-02T15:44:18.968864 p:7052 t:480 [LOG] > interface found: java.awt.event.MouseListener
2014-04-02T15:44:18.968864 p:7052 t:480 [LOG] > interface found: spim.progacq.AcqOutputHandler
2014-04-02T15:44:18.968864 p:7052 t:480 [LOG] > interface found: spim.progacq.AcqOutputHandler
2014-04-02T15:44:18.968864 p:7052 t:480 [LOG] > interface found: spim.progacq.AntiDrift$Callback
2014-04-02T15:44:18.968864 p:7052 t:480 [LOG] > interface found: java.lang.Runnable
2014-04-02T15:44:18.968864 p:7052 t:480 [LOG] > interface found: java.lang.Runnable
2014-04-02T15:44:18.968864 p:7052 t:480 [LOG] > interface found: javax.swing.event.ChangeListener
2014-04-02T15:44:18.968864 p:7052 t:480 [LOG] > interface found: java.awt.event.KeyListener
2014-04-02T15:44:18.968864 p:7052 t:480 [LOG] > interface found: java.lang.Iterable
2014-04-02T15:44:18.968864 p:7052 t:480 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:44:18.968864 p:7052 t:480 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:44:18.968864 p:7052 t:480 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:44:18.968864 p:7052 t:480 [LOG] > interface found: java.awt.event.ItemListener
2014-04-02T15:44:18.968864 p:7052 t:480 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:44:18.968864 p:7052 t:480 [LOG] > interface found: java.awt.event.ItemListener
2014-04-02T15:44:18.968864 p:7052 t:480 [LOG] > interface found: java.awt.event.ItemListener
2014-04-02T15:44:18.968864 p:7052 t:480 [LOG] > interface found: java.awt.event.ItemListener
2014-04-02T15:44:18.968864 p:7052 t:480 [LOG] > interface found: java.awt.event.ItemListener
2014-04-02T15:44:18.968864 p:7052 t:480 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:44:18.968864 p:7052 t:480 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:44:18.968864 p:7052 t:480 [LOG] > interface found: java.util.Comparator
2014-04-02T15:44:18.968864 p:7052 t:480 [LOG] > interface found: spim.progacq.AntiDrift$Factory
2014-04-02T15:44:18.968864 p:7052 t:480 [LOG] > interface found: spim.progacq.AntiDrift$Factory
2014-04-02T15:44:18.968864 p:7052 t:480 [LOG] > interface found: spim.progacq.AntiDrift$Factory
2014-04-02T15:44:18.968864 p:7052 t:480 [LOG] > interface found: spim.progacq.ProgrammaticAcquisitor$AcqProgressCallback
2014-04-02T15:44:18.968864 p:7052 t:480 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:44:18.968864 p:7052 t:480 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:44:18.968864 p:7052 t:480 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T15:44:18.968864 p:7052 t:480 [LOG] > interface found: spim.SPIMAutoCalibrator$RunnableWRet
2014-04-02T15:44:18.968864 p:7052 t:480 [LOG] > interface found: java.lang.Runnable
2014-04-02T15:44:18.984464 p:7052 t:480 [LOG] > Attempting to install autofocus plugin Autofocus
2014-04-02T15:44:18.984464 p:7052 t:480 [LOG] > Attempting to install autofocus plugin AutofocusDuo
2014-04-02T15:44:18.984464 p:7052 t:480 [LOG] > Attempting to install autofocus plugin AutofocusTB
2014-04-02T15:44:18.984464 p:7052 t:480 [LOG] > Attempting to install autofocus plugin OughtaFocus
2014-04-02T15:44:20.263666 p:7052 t:7152 [dbg] Will set property: "Core"-"Initialize" = "0"
2014-04-02T15:44:20.263666 p:7052 t:7152 [LOG] All devices unloaded.
2014-04-02T15:44:20.263666 p:7052 t:7152 [dbg] > Notification for Device: Core Property: Initialize changed to value: 0
2014-04-02T15:44:20.263666 p:7052 t:7152 [dbg] Did set property: "Core"-"Initialize" = "0"
2014-04-02T15:44:20.263666 p:7052 t:7152 [LOG] Device COM3 loaded from SerialManager and labeled as COM3
2014-04-02T15:44:20.263666 p:7052 t:7152 [LOG] Error occurred. Device MMCore::loadDevice. Failed to load device adapter "Cobolt" from "C:\Users\User\Desktop\OpenSPIM.app\mm\win32\mmgr_dal_Cobolt.dll"
2014-04-02T15:44:20.263666 p:7052 t:7152 [LOG] Device HamamatsuHam_DCAM loaded from HamamatsuHam and labeled as OrcaFlash
2014-04-02T15:44:20.794067 p:7052 t:7152 [LOG] Device Picard Twister loaded from PicardStage and labeled as Picard Twister
2014-04-02T15:44:20.794067 p:7052 t:7152 [LOG] Device Picard Z Stage loaded from PicardStage and labeled as Picard Z Stage
2014-04-02T15:44:20.794067 p:7052 t:7152 [LOG] Device Picard XY Stage loaded from PicardStage and labeled as Picard XY Stage
2014-04-02T15:44:20.794067 p:7052 t:7152 [dbg] Will set property: "Cobolt"-"Max Power" = "60.0000"
2014-04-02T15:44:20.794067 p:7052 t:7152 [dbg] Will set property: "Cobolt"-"Port" = "COM3"
2014-04-02T15:44:20.794067 p:7052 t:7152 [dbg] Will set property: "Picard Twister"-"Serial Number" = "37"
2014-04-02T15:44:20.809667 p:7052 t:7152 [dbg] Did set property: "Picard Twister"-"Serial Number" = "37"
2014-04-02T15:44:20.809667 p:7052 t:7152 [dbg] Will set property: "Picard Z Stage"-"Serial Number" = "140"
2014-04-02T15:44:20.825267 p:7052 t:7152 [dbg] Did set property: "Picard Z Stage"-"Serial Number" = "140"
2014-04-02T15:44:20.825267 p:7052 t:7152 [dbg] Will set property: "Picard XY Stage"-"Serial Number (X)" = "139"
2014-04-02T15:44:20.840867 p:7052 t:7152 [dbg] Did set property: "Picard XY Stage"-"Serial Number (X)" = "139"
2014-04-02T15:44:20.840867 p:7052 t:7152 [dbg] Will set property: "Picard XY Stage"-"Serial Number (Y)" = "141"
2014-04-02T15:44:20.872067 p:7052 t:7152 [dbg] Did set property: "Picard XY Stage"-"Serial Number (Y)" = "141"
2014-04-02T15:44:20.872067 p:7052 t:7152 [dbg] Will set property: "Picard XY Stage"-"X-Max" = "8000"
2014-04-02T15:44:20.872067 p:7052 t:7152 [dbg] Did set property: "Picard XY Stage"-"X-Max" = "8000"
2014-04-02T15:44:20.872067 p:7052 t:7152 [dbg] Will set property: "Picard XY Stage"-"X-Min" = "1"
2014-04-02T15:44:20.872067 p:7052 t:7152 [dbg] Did set property: "Picard XY Stage"-"X-Min" = "1"
2014-04-02T15:44:20.872067 p:7052 t:7152 [dbg] Will set property: "Picard XY Stage"-"Y-Max" = "8000"
2014-04-02T15:44:20.872067 p:7052 t:7152 [dbg] Did set property: "Picard XY Stage"-"Y-Max" = "8000"
2014-04-02T15:44:20.872067 p:7052 t:7152 [dbg] Will set property: "Picard XY Stage"-"Y-Min" = "1"
2014-04-02T15:44:20.872067 p:7052 t:7152 [dbg] Did set property: "Picard XY Stage"-"Y-Min" = "1"
2014-04-02T15:44:20.872067 p:7052 t:7152 [dbg] Will set property: "COM3"-"AnswerTimeout" = "500.0000"
2014-04-02T15:44:20.872067 p:7052 t:7152 [dbg] Did set property: "COM3"-"AnswerTimeout" = "500.0000"
2014-04-02T15:44:20.872067 p:7052 t:7152 [dbg] Will set property: "COM3"-"BaudRate" = "115200"
2014-04-02T15:44:20.872067 p:7052 t:7152 [dbg] Did set property: "COM3"-"BaudRate" = "115200"
2014-04-02T15:44:20.872067 p:7052 t:7152 [dbg] Will set property: "COM3"-"DelayBetweenCharsMs" = "0.0000"
2014-04-02T15:44:20.872067 p:7052 t:7152 [dbg] Did set property: "COM3"-"DelayBetweenCharsMs" = "0.0000"
2014-04-02T15:44:20.872067 p:7052 t:7152 [dbg] Will set property: "COM3"-"Handshaking" = "Off"
2014-04-02T15:44:20.872067 p:7052 t:7152 [dbg] Did set property: "COM3"-"Handshaking" = "Off"
2014-04-02T15:44:20.872067 p:7052 t:7152 [dbg] Will set property: "COM3"-"Parity" = "None"
2014-04-02T15:44:20.872067 p:7052 t:7152 [dbg] Did set property: "COM3"-"Parity" = "None"
2014-04-02T15:44:20.872067 p:7052 t:7152 [dbg] Will set property: "COM3"-"StopBits" = "1"
2014-04-02T15:44:20.872067 p:7052 t:7152 [dbg] Did set property: "COM3"-"StopBits" = "1"
2014-04-02T15:44:20.872067 p:7052 t:7152 [dbg] Will set property: "COM3"-"Verbose" = "1"
2014-04-02T15:44:20.872067 p:7052 t:7152 [dbg] Did set property: "COM3"-"Verbose" = "1"
2014-04-02T15:44:20.872067 p:7052 t:7152 [dbg] Will set property: "Core"-"Initialize" = "1"
2014-04-02T15:44:20.872067 p:7052 t:7152 [LOG] Starting initialization sequence for 5 devices...
2014-04-02T15:44:20.872067 p:7052 t:7152 [dbg] Device COM3 debug message: Attempting to set baud of COM3 to 115200
2014-04-02T15:44:20.887667 p:7052 t:7152 [dbg] Device COM3 debug message: Attempting to set flow of COM3 to none
2014-04-02T15:44:20.903267 p:7052 t:7152 [dbg] Device COM3 debug message: Attempting to set parity of COM3 to none
2014-04-02T15:44:20.903267 p:7052 t:7152 [dbg] Device COM3 debug message: Attempting to set stopBits of COM3 to 1
2014-04-02T15:44:20.918867 p:7052 t:7152 [LOG] Device COM3 initialized.
2014-04-02T15:44:22.027129 p:7052 t:7152 [LOG] Device OrcaFlash set as default camera.
2014-04-02T15:44:22.027129 p:7052 t:7152 [LOG] Device OrcaFlash initialized.
2014-04-02T15:44:22.036129 p:7052 t:7152 [LOG] Device Picard Twister initialized.
2014-04-02T15:44:22.056130 p:7052 t:7152 [LOG] Device Picard Z Stage initialized.
2014-04-02T15:44:22.092133 p:7052 t:7152 [LOG] Device Picard XY Stage set as default xyStage.
2014-04-02T15:44:22.092133 p:7052 t:7152 [LOG] Device Picard XY Stage initialized.
2014-04-02T15:44:22.092133 p:7052 t:7152 [dbg] > Notification for Device: Core Property: Initialize changed to value: 1
2014-04-02T15:44:22.092133 p:7052 t:7152 [dbg] Did set property: "Core"-"Initialize" = "1"
2014-04-02T15:44:22.092133 p:7052 t:7152 [dbg] Will set property: "Core"-"Camera" = "OrcaFlash"
2014-04-02T15:44:22.092133 p:7052 t:7152 [LOG] Camera device set to OrcaFlash
2014-04-02T15:44:22.092133 p:7052 t:7152 [dbg] > Notification for Device: Core Property: Camera changed to value: OrcaFlash
2014-04-02T15:44:22.092133 p:7052 t:7152 [dbg] Did set property: "Core"-"Camera" = "OrcaFlash"
2014-04-02T15:44:22.092133 p:7052 t:7152 [dbg] Will set property: "Core"-"Shutter" = "Cobolt"
2014-04-02T15:44:22.092133 p:7052 t:7152 [dbg] Will set property: "Core"-"Focus" = "Picard Z Stage"
2014-04-02T15:44:22.092133 p:7052 t:7152 [LOG] Focus device set to Picard Z Stage
2014-04-02T15:44:22.092133 p:7052 t:7152 [dbg] > Notification for Device: Core Property: Focus changed to value: Picard Z Stage
2014-04-02T15:44:22.092133 p:7052 t:7152 [dbg] Did set property: "Core"-"Focus" = "Picard Z Stage"
2014-04-02T15:44:22.092133 p:7052 t:7152 [dbg] Will set property: "Core"-"AutoShutter" = "1"
2014-04-02T15:44:22.092133 p:7052 t:7152 [LOG] Auto shutter ON.
2014-04-02T15:44:22.092133 p:7052 t:7152 [dbg] > Notification for Device: Core Property: AutoShutter changed to value: 1
2014-04-02T15:44:22.092133 p:7052 t:7152 [dbg] Did set property: "Core"-"AutoShutter" = "1"
2014-04-02T15:44:22.093133 p:7052 t:7152 [LOG] > 
java.lang.Exception: Line 8: Device,Cobolt,Cobolt,Cobolt
Failed to load device adapter "Cobolt" from "C:\Users\User\Desktop\OpenSPIM.app\mm\win32\mmgr_dal_Cobolt.dll"

Line 15: Property,Cobolt,Max Power,60.0000
No device with label "Cobolt"

Line 16: Property,Cobolt,Port,COM3
No device with label "Cobolt"

Line 44: Property,Core,Shutter,Cobolt
Cannot set Core property Shutter to invalid value "Cobolt"

 in Thread[AWT-EventQueue-0,6,main]
  at mmcorej.MMCoreJJNI.CMMCore_loadSystemConfiguration(Native Method)
  at mmcorej.CMMCore.loadSystemConfiguration(CMMCore.java:341)
  at org.micromanager.MMStudioMainFrame.loadSystemConfiguration(MMStudioMainFrame.java:3289)
  at org.micromanager.MMStudioMainFrame.access$2400(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48.windowOpened(MMStudioMainFrame.java:1514)
  at java.awt.AWTEventMulticaster.windowOpened(AWTEventMulticaster.java:322)
  at java.awt.Window.processWindowEvent(Window.java:1862)
  at javax.swing.JFrame.processWindowEvent(JFrame.java:274)
  at java.awt.Window.processEvent(Window.java:1823)
  at java.awt.Component.dispatchEventImpl(Component.java:4652)
  at java.awt.Container.dispatchEventImpl(Container.java:2099)
  at java.awt.Window.dispatchEventImpl(Window.java:2478)
  at java.awt.Component.dispatchEvent(Component.java:4482)
  at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:644)
  at java.awt.EventQueue.access$000(EventQueue.java:85)
  at java.awt.EventQueue$1.run(EventQueue.java:603)
  at java.awt.EventQueue$1.run(EventQueue.java:601)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
  at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
  at java.awt.EventQueue$2.run(EventQueue.java:617)
  at java.awt.EventQueue$2.run(EventQueue.java:615)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
  at java.awt.EventQueue.dispatchEvent(EventQueue.java:614)
  at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269)
  at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184)
  at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174)
  at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169)
  at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161)
  at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
2014-04-02T15:44:23.952239 p:7052 t:7152 [LOG] System state cache updated.
2014-04-02T15:44:23.988241 p:7052 t:7152 [LOG] > Startup script file (C:\Users\User\Desktop\OpenSPIM.app/MMStartup.bsh) not present.
2014-04-02T15:44:33.613792 p:7052 t:7152 [LOG] > [UI] JButton "Hide Details" clicked in ProgressDialog.
2014-04-02T15:44:54.872007 p:7052 t:7152 [dbg] Waiting for device COM3...
2014-04-02T15:44:54.873008 p:7052 t:7152 [dbg] Finished waiting.
2014-04-02T15:44:54.873008 p:7052 t:7152 [dbg] Waiting for device OrcaFlash...
2014-04-02T15:44:54.873008 p:7052 t:7152 [dbg] Finished waiting.
2014-04-02T15:44:54.873008 p:7052 t:7152 [dbg] Waiting for device Picard Twister...
2014-04-02T15:44:54.873008 p:7052 t:7152 [dbg] Finished waiting.
2014-04-02T15:44:54.873008 p:7052 t:7152 [dbg] Waiting for device Picard Z Stage...
2014-04-02T15:44:54.873008 p:7052 t:7152 [dbg] Finished waiting.
2014-04-02T15:44:54.873008 p:7052 t:7152 [dbg] Waiting for device Picard XY Stage...
2014-04-02T15:44:54.873008 p:7052 t:7152 [dbg] Finished waiting.
2014-04-02T16:46:23.760493 p:3720 t:3080 [LOG] -------->>
2014-04-02T16:46:23.760493 p:3720 t:3080 [LOG] Core session started by User on OPENSPIM01
2014-04-02T16:46:23.760493 p:3720 t:3080 [LOG] Debug logging disabled
2014-04-02T16:46:23.760493 p:3720 t:3080 [LOG] Debug logging enabled
2014-04-02T16:46:23.760493 p:3720 t:3080 [LOG] > MM Studio version: 1.4.x dev
2014-04-02T16:46:23.760493 p:3720 t:3080 [LOG] > MMCore version 2.3.2
2014-04-02T16:46:23.760493 p:3720 t:3080 [LOG] > Device API version 57, Module API version 8
2014-04-02T16:46:23.760493 p:3720 t:3080 [LOG] > Operating System: Windows 7 (x86) 6.1
2014-04-02T16:46:23.760493 p:3720 t:3080 [LOG] > JVM: Java HotSpot(TM) Client VM, version 1.6.0_24, 32-bit
2014-04-02T16:46:23.760493 p:3720 t:3080 [dbg] Circular buffer set to 25 MB.
2014-04-02T16:46:23.776093 p:3720 t:2692 [LOG] > Failed to load spim.FitPlane$1 java.lang.ClassNotFoundException: org.apache.commons.math.analysis.MultivariateRealFunction
java.lang.NoClassDefFoundError: org/apache/commons/math/analysis/MultivariateRealFunction in Thread[Plugin loading,6,main]
  at java.lang.ClassLoader.defineClass1(Native Method)
  at java.lang.ClassLoader.defineClassCond(ClassLoader.java:632)
  at java.lang.ClassLoader.defineClass(ClassLoader.java:616)
  at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:141)
  at java.net.URLClassLoader.defineClass(URLClassLoader.java:283)
  at java.net.URLClassLoader.access$000(URLClassLoader.java:58)
  at java.net.URLClassLoader$1.run(URLClassLoader.java:197)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.analysis.MultivariateRealFunction
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.ClassLoader.defineClass1(Native Method)
  at java.lang.ClassLoader.defineClassCond(ClassLoader.java:632)
  at java.lang.ClassLoader.defineClass(ClassLoader.java:616)
  at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:141)
  at java.net.URLClassLoader.defineClass(URLClassLoader.java:283)
  at java.net.URLClassLoader.access$000(URLClassLoader.java:58)
  at java.net.URLClassLoader$1.run(URLClassLoader.java:197)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T16:46:23.776093 p:3720 t:2692 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T16:46:23.776093 p:3720 t:2692 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T16:46:23.776093 p:3720 t:2692 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T16:46:23.776093 p:3720 t:2692 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T16:46:23.776093 p:3720 t:2692 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T16:46:23.776093 p:3720 t:2692 [LOG] > java.lang.ClassLoader.defineClass1(Native Method)
2014-04-02T16:46:23.776093 p:3720 t:2692 [LOG] > java.lang.ClassLoader.defineClassCond(ClassLoader.java:632)
2014-04-02T16:46:23.776093 p:3720 t:2692 [LOG] > java.lang.ClassLoader.defineClass(ClassLoader.java:616)
2014-04-02T16:46:23.776093 p:3720 t:2692 [LOG] > java.security.SecureClassLoader.defineClass(SecureClassLoader.java:141)
2014-04-02T16:46:23.776093 p:3720 t:2692 [LOG] > java.net.URLClassLoader.defineClass(URLClassLoader.java:283)
2014-04-02T16:46:23.776093 p:3720 t:2692 [LOG] > java.net.URLClassLoader.access$000(URLClassLoader.java:58)
2014-04-02T16:46:23.776093 p:3720 t:2692 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:197)
2014-04-02T16:46:23.776093 p:3720 t:2692 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T16:46:23.776093 p:3720 t:2692 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T16:46:23.776093 p:3720 t:2692 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T16:46:23.776093 p:3720 t:2692 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T16:46:23.776093 p:3720 t:2692 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T16:46:23.776093 p:3720 t:2692 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T16:46:23.776093 p:3720 t:2692 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T16:46:23.776093 p:3720 t:2692 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T16:46:23.776093 p:3720 t:2692 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T16:46:23.776093 p:3720 t:2692 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T16:46:23.776093 p:3720 t:2692 [LOG] > Failed to load spim.FitPlane java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
java.lang.NoClassDefFoundError: org/apache/commons/math/geometry/Vector in Thread[Plugin loading,6,main]
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T16:46:23.776093 p:3720 t:2692 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T16:46:23.776093 p:3720 t:2692 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T16:46:23.776093 p:3720 t:2692 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T16:46:23.776093 p:3720 t:2692 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T16:46:23.776093 p:3720 t:2692 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T16:46:23.776093 p:3720 t:2692 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T16:46:23.776093 p:3720 t:2692 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T16:46:23.776093 p:3720 t:2692 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T16:46:23.776093 p:3720 t:2692 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T16:46:23.776093 p:3720 t:2692 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T16:46:23.776093 p:3720 t:2692 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T16:46:23.776093 p:3720 t:2692 [LOG] > Failed to load spim.FitSphere$1 java.lang.ClassNotFoundException: org.apache.commons.math.analysis.MultivariateRealFunction
java.lang.NoClassDefFoundError: org/apache/commons/math/analysis/MultivariateRealFunction in Thread[Plugin loading,6,main]
  at java.lang.ClassLoader.defineClass1(Native Method)
  at java.lang.ClassLoader.defineClassCond(ClassLoader.java:632)
  at java.lang.ClassLoader.defineClass(ClassLoader.java:616)
  at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:141)
  at java.net.URLClassLoader.defineClass(URLClassLoader.java:283)
  at java.net.URLClassLoader.access$000(URLClassLoader.java:58)
  at java.net.URLClassLoader$1.run(URLClassLoader.java:197)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.analysis.MultivariateRealFunction
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.ClassLoader.defineClass1(Native Method)
  at java.lang.ClassLoader.defineClassCond(ClassLoader.java:632)
  at java.lang.ClassLoader.defineClass(ClassLoader.java:616)
  at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:141)
  at java.net.URLClassLoader.defineClass(URLClassLoader.java:283)
  at java.net.URLClassLoader.access$000(URLClassLoader.java:58)
  at java.net.URLClassLoader$1.run(URLClassLoader.java:197)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T16:46:23.776093 p:3720 t:2692 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T16:46:23.776093 p:3720 t:2692 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T16:46:23.776093 p:3720 t:2692 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T16:46:23.776093 p:3720 t:2692 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T16:46:23.776093 p:3720 t:2692 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T16:46:23.776093 p:3720 t:2692 [LOG] > java.lang.ClassLoader.defineClass1(Native Method)
2014-04-02T16:46:23.776093 p:3720 t:2692 [LOG] > java.lang.ClassLoader.defineClassCond(ClassLoader.java:632)
2014-04-02T16:46:23.776093 p:3720 t:2692 [LOG] > java.lang.ClassLoader.defineClass(ClassLoader.java:616)
2014-04-02T16:46:23.776093 p:3720 t:2692 [LOG] > java.security.SecureClassLoader.defineClass(SecureClassLoader.java:141)
2014-04-02T16:46:23.776093 p:3720 t:2692 [LOG] > java.net.URLClassLoader.defineClass(URLClassLoader.java:283)
2014-04-02T16:46:23.776093 p:3720 t:2692 [LOG] > java.net.URLClassLoader.access$000(URLClassLoader.java:58)
2014-04-02T16:46:23.776093 p:3720 t:2692 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:197)
2014-04-02T16:46:23.776093 p:3720 t:2692 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T16:46:23.776093 p:3720 t:2692 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T16:46:23.776093 p:3720 t:2692 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T16:46:23.776093 p:3720 t:2692 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T16:46:23.776093 p:3720 t:2692 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T16:46:23.776093 p:3720 t:2692 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T16:46:23.776093 p:3720 t:2692 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T16:46:23.776093 p:3720 t:2692 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T16:46:23.776093 p:3720 t:2692 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T16:46:23.776093 p:3720 t:2692 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T16:46:23.776093 p:3720 t:2692 [LOG] > Failed to load spim.FitSphere java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
java.lang.NoClassDefFoundError: org/apache/commons/math/geometry/Vector in Thread[Plugin loading,6,main]
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T16:46:23.776093 p:3720 t:2692 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T16:46:23.776093 p:3720 t:2692 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T16:46:23.776093 p:3720 t:2692 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T16:46:23.776093 p:3720 t:2692 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T16:46:23.776093 p:3720 t:2692 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T16:46:23.776093 p:3720 t:2692 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T16:46:23.776093 p:3720 t:2692 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T16:46:23.776093 p:3720 t:2692 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T16:46:23.776093 p:3720 t:2692 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T16:46:23.776093 p:3720 t:2692 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T16:46:23.776093 p:3720 t:2692 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T16:46:23.791693 p:3720 t:2692 [LOG] > Failed to load spim.PixelSizeCalibrator$GridLineFinder$1 java.lang.ClassNotFoundException: org.apache.commons.math.analysis.MultivariateRealFunction
java.lang.NoClassDefFoundError: org/apache/commons/math/analysis/MultivariateRealFunction in Thread[Plugin loading,6,main]
  at java.lang.ClassLoader.defineClass1(Native Method)
  at java.lang.ClassLoader.defineClassCond(ClassLoader.java:632)
  at java.lang.ClassLoader.defineClass(ClassLoader.java:616)
  at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:141)
  at java.net.URLClassLoader.defineClass(URLClassLoader.java:283)
  at java.net.URLClassLoader.access$000(URLClassLoader.java:58)
  at java.net.URLClassLoader$1.run(URLClassLoader.java:197)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.analysis.MultivariateRealFunction
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.ClassLoader.defineClass1(Native Method)
  at java.lang.ClassLoader.defineClassCond(ClassLoader.java:632)
  at java.lang.ClassLoader.defineClass(ClassLoader.java:616)
  at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:141)
  at java.net.URLClassLoader.defineClass(URLClassLoader.java:283)
  at java.net.URLClassLoader.access$000(URLClassLoader.java:58)
  at java.net.URLClassLoader$1.run(URLClassLoader.java:197)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T16:46:23.791693 p:3720 t:2692 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T16:46:23.791693 p:3720 t:2692 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T16:46:23.791693 p:3720 t:2692 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T16:46:23.791693 p:3720 t:2692 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T16:46:23.791693 p:3720 t:2692 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T16:46:23.791693 p:3720 t:2692 [LOG] > java.lang.ClassLoader.defineClass1(Native Method)
2014-04-02T16:46:23.791693 p:3720 t:2692 [LOG] > java.lang.ClassLoader.defineClassCond(ClassLoader.java:632)
2014-04-02T16:46:23.791693 p:3720 t:2692 [LOG] > java.lang.ClassLoader.defineClass(ClassLoader.java:616)
2014-04-02T16:46:23.791693 p:3720 t:2692 [LOG] > java.security.SecureClassLoader.defineClass(SecureClassLoader.java:141)
2014-04-02T16:46:23.791693 p:3720 t:2692 [LOG] > java.net.URLClassLoader.defineClass(URLClassLoader.java:283)
2014-04-02T16:46:23.791693 p:3720 t:2692 [LOG] > java.net.URLClassLoader.access$000(URLClassLoader.java:58)
2014-04-02T16:46:23.791693 p:3720 t:2692 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:197)
2014-04-02T16:46:23.791693 p:3720 t:2692 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T16:46:23.791693 p:3720 t:2692 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T16:46:23.791693 p:3720 t:2692 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T16:46:23.791693 p:3720 t:2692 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T16:46:23.791693 p:3720 t:2692 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T16:46:23.791693 p:3720 t:2692 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T16:46:23.791693 p:3720 t:2692 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T16:46:23.791693 p:3720 t:2692 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T16:46:23.791693 p:3720 t:2692 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T16:46:23.791693 p:3720 t:2692 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T16:46:23.807293 p:3720 t:2692 [LOG] > Failed to load spim.PixelSizeCalibrator$GridLineFinder java.lang.ClassNotFoundException: org.apache.commons.math.optimization.direct.AbstractSimplex
java.lang.NoClassDefFoundError: org/apache/commons/math/optimization/direct/AbstractSimplex in Thread[Plugin loading,6,main]
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.optimization.direct.AbstractSimplex
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T16:46:23.807293 p:3720 t:2692 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T16:46:23.807293 p:3720 t:2692 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T16:46:23.807293 p:3720 t:2692 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T16:46:23.807293 p:3720 t:2692 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T16:46:23.807293 p:3720 t:2692 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T16:46:23.807293 p:3720 t:2692 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T16:46:23.807293 p:3720 t:2692 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T16:46:23.807293 p:3720 t:2692 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T16:46:23.807293 p:3720 t:2692 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T16:46:23.807293 p:3720 t:2692 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T16:46:23.807293 p:3720 t:2692 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T16:46:23.822893 p:3720 t:2692 [LOG] > Failed to load spim.progacq.IntensityMeanAntiDrift java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
java.lang.NoClassDefFoundError: org/apache/commons/math/geometry/Vector in Thread[Plugin loading,6,main]
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T16:46:23.822893 p:3720 t:2692 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T16:46:23.822893 p:3720 t:2692 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T16:46:23.822893 p:3720 t:2692 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T16:46:23.822893 p:3720 t:2692 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T16:46:23.822893 p:3720 t:2692 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T16:46:23.822893 p:3720 t:2692 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T16:46:23.822893 p:3720 t:2692 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T16:46:23.822893 p:3720 t:2692 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T16:46:23.822893 p:3720 t:2692 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T16:46:23.822893 p:3720 t:2692 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T16:46:23.822893 p:3720 t:2692 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T16:46:23.838493 p:3720 t:2692 [LOG] > Failed to load spim.progacq.ProjDiffAntiDrift$1 java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
java.lang.NoClassDefFoundError: org/apache/commons/math/geometry/Vector in Thread[Plugin loading,6,main]
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T16:46:23.838493 p:3720 t:2692 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T16:46:23.838493 p:3720 t:2692 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T16:46:23.838493 p:3720 t:2692 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T16:46:23.838493 p:3720 t:2692 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T16:46:23.838493 p:3720 t:2692 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T16:46:23.838493 p:3720 t:2692 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T16:46:23.838493 p:3720 t:2692 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T16:46:23.838493 p:3720 t:2692 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T16:46:23.838493 p:3720 t:2692 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T16:46:23.838493 p:3720 t:2692 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T16:46:23.838493 p:3720 t:2692 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T16:46:23.838493 p:3720 t:2692 [LOG] > Failed to load spim.progacq.ProjDiffAntiDrift$AdjusterGUI java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
java.lang.NoClassDefFoundError: org/apache/commons/math/geometry/Vector in Thread[Plugin loading,6,main]
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T16:46:23.838493 p:3720 t:2692 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T16:46:23.838493 p:3720 t:2692 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T16:46:23.838493 p:3720 t:2692 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T16:46:23.838493 p:3720 t:2692 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T16:46:23.838493 p:3720 t:2692 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T16:46:23.838493 p:3720 t:2692 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T16:46:23.838493 p:3720 t:2692 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T16:46:23.838493 p:3720 t:2692 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T16:46:23.838493 p:3720 t:2692 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T16:46:23.838493 p:3720 t:2692 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T16:46:23.838493 p:3720 t:2692 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T16:46:23.854093 p:3720 t:2692 [LOG] > Failed to load spim.progacq.ProjDiffAntiDrift java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
java.lang.NoClassDefFoundError: org/apache/commons/math/geometry/Vector in Thread[Plugin loading,6,main]
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T16:46:23.854093 p:3720 t:2692 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T16:46:23.854093 p:3720 t:2692 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T16:46:23.854093 p:3720 t:2692 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T16:46:23.854093 p:3720 t:2692 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T16:46:23.854093 p:3720 t:2692 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T16:46:23.854093 p:3720 t:2692 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T16:46:23.854093 p:3720 t:2692 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T16:46:23.854093 p:3720 t:2692 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T16:46:23.854093 p:3720 t:2692 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T16:46:23.854093 p:3720 t:2692 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T16:46:23.854093 p:3720 t:2692 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T16:46:23.900893 p:3720 t:2692 [LOG] > Failed to load spim.SPIMAcquisition java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
java.lang.NoClassDefFoundError: org/apache/commons/math/geometry/Vector in Thread[Plugin loading,6,main]
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T16:46:23.900893 p:3720 t:2692 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T16:46:23.900893 p:3720 t:2692 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T16:46:23.900893 p:3720 t:2692 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T16:46:23.900893 p:3720 t:2692 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T16:46:23.900893 p:3720 t:2692 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T16:46:23.900893 p:3720 t:2692 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T16:46:23.900893 p:3720 t:2692 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T16:46:23.900893 p:3720 t:2692 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T16:46:23.900893 p:3720 t:2692 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T16:46:23.900893 p:3720 t:2692 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T16:46:23.900893 p:3720 t:2692 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T16:46:23.900893 p:3720 t:2692 [LOG] > Failed to load spim.SPIMAutoCalibrator java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
java.lang.NoClassDefFoundError: org/apache/commons/math/geometry/Vector in Thread[Plugin loading,6,main]
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T16:46:23.900893 p:3720 t:2692 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T16:46:23.900893 p:3720 t:2692 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T16:46:23.900893 p:3720 t:2692 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T16:46:23.900893 p:3720 t:2692 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T16:46:23.900893 p:3720 t:2692 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T16:46:23.900893 p:3720 t:2692 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T16:46:23.900893 p:3720 t:2692 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T16:46:23.900893 p:3720 t:2692 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T16:46:23.900893 p:3720 t:2692 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T16:46:23.900893 p:3720 t:2692 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T16:46:23.900893 p:3720 t:2692 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T16:46:23.900893 p:3720 t:2692 [LOG] > Failed to load spim.SPIMManualCalibrator java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
java.lang.NoClassDefFoundError: org/apache/commons/math/geometry/Vector in Thread[Plugin loading,6,main]
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.math.geometry.Vector
  at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:169)
  at org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
  at org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
  at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T16:46:23.900893 p:3720 t:2692 [LOG] > java.net.URLClassLoader$1.run(URLClassLoader.java:202)
2014-04-02T16:46:23.916493 p:3720 t:2692 [LOG] > java.security.AccessController.doPrivileged(Native Method)
2014-04-02T16:46:23.916493 p:3720 t:2692 [LOG] > java.net.URLClassLoader.findClass(URLClassLoader.java:190)
2014-04-02T16:46:23.916493 p:3720 t:2692 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:307)
2014-04-02T16:46:23.916493 p:3720 t:2692 [LOG] > java.lang.ClassLoader.loadClass(ClassLoader.java:248)
2014-04-02T16:46:23.916493 p:3720 t:2692 [LOG] > java.lang.Class.forName0(Native Method)
2014-04-02T16:46:23.916493 p:3720 t:2692 [LOG] > java.lang.Class.forName(Class.java:169)
2014-04-02T16:46:23.916493 p:3720 t:2692 [LOG] > org.micromanager.utils.JavaUtils.findClasses(JavaUtils.java:82)
2014-04-02T16:46:23.916493 p:3720 t:2692 [LOG] > org.micromanager.MMStudioMainFrame.loadPlugins(MMStudioMainFrame.java:4411)
2014-04-02T16:46:23.916493 p:3720 t:2692 [LOG] > org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:155)
2014-04-02T16:46:23.916493 p:3720 t:2692 [LOG] > org.micromanager.MMStudioMainFrame$48$ThreadPluginLoading.run(MMStudioMainFrame.java:1574)
2014-04-02T16:46:23.916493 p:3720 t:2692 [LOG] > #uManager plugins: 94
2014-04-02T16:46:23.916493 p:3720 t:2692 [LOG] > interface found: javax.swing.event.ChangeListener
2014-04-02T16:46:23.916493 p:3720 t:2692 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T16:46:23.916493 p:3720 t:2692 [LOG] > interface found: java.awt.event.ItemListener
2014-04-02T16:46:23.916493 p:3720 t:2692 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T16:46:23.916493 p:3720 t:2692 [LOG] > interface found: java.awt.event.ItemListener
2014-04-02T16:46:23.916493 p:3720 t:2692 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T16:46:23.916493 p:3720 t:2692 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T16:46:23.916493 p:3720 t:2692 [LOG] > interface found: javax.swing.event.ChangeListener
2014-04-02T16:46:23.916493 p:3720 t:2692 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T16:46:23.916493 p:3720 t:2692 [LOG] > interface found: java.awt.event.MouseListener
2014-04-02T16:46:23.916493 p:3720 t:2692 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T16:46:23.916493 p:3720 t:2692 [LOG] > interface found: java.lang.Runnable
2014-04-02T16:46:23.916493 p:3720 t:2692 [LOG] > interface found: spim.progacq.AcqOutputHandler
2014-04-02T16:46:23.916493 p:3720 t:2692 [LOG] > interface found: java.lang.Thread$UncaughtExceptionHandler
2014-04-02T16:46:23.916493 p:3720 t:2692 [LOG] > interface found: spim.progacq.AcqOutputHandler
2014-04-02T16:46:23.916493 p:3720 t:2692 [LOG] > interface found: java.awt.event.MouseListener
2014-04-02T16:46:23.916493 p:3720 t:2692 [LOG] > interface found: spim.progacq.AcqOutputHandler
2014-04-02T16:46:23.916493 p:3720 t:2692 [LOG] > interface found: spim.progacq.AcqOutputHandler
2014-04-02T16:46:23.916493 p:3720 t:2692 [LOG] > interface found: spim.progacq.AntiDrift$Callback
2014-04-02T16:46:23.916493 p:3720 t:2692 [LOG] > interface found: java.lang.Runnable
2014-04-02T16:46:23.916493 p:3720 t:2692 [LOG] > interface found: java.lang.Runnable
2014-04-02T16:46:23.916493 p:3720 t:2692 [LOG] > interface found: javax.swing.event.ChangeListener
2014-04-02T16:46:23.916493 p:3720 t:2692 [LOG] > interface found: java.awt.event.KeyListener
2014-04-02T16:46:23.916493 p:3720 t:2692 [LOG] > interface found: java.lang.Iterable
2014-04-02T16:46:23.916493 p:3720 t:2692 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T16:46:23.916493 p:3720 t:2692 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T16:46:23.916493 p:3720 t:2692 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T16:46:23.916493 p:3720 t:2692 [LOG] > interface found: java.awt.event.ItemListener
2014-04-02T16:46:23.916493 p:3720 t:2692 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T16:46:23.916493 p:3720 t:2692 [LOG] > interface found: java.awt.event.ItemListener
2014-04-02T16:46:23.916493 p:3720 t:2692 [LOG] > interface found: java.awt.event.ItemListener
2014-04-02T16:46:23.916493 p:3720 t:2692 [LOG] > interface found: java.awt.event.ItemListener
2014-04-02T16:46:23.916493 p:3720 t:2692 [LOG] > interface found: java.awt.event.ItemListener
2014-04-02T16:46:23.916493 p:3720 t:2692 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T16:46:23.916493 p:3720 t:2692 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T16:46:23.916493 p:3720 t:2692 [LOG] > interface found: java.util.Comparator
2014-04-02T16:46:23.916493 p:3720 t:2692 [LOG] > interface found: spim.progacq.AntiDrift$Factory
2014-04-02T16:46:23.916493 p:3720 t:2692 [LOG] > interface found: spim.progacq.AntiDrift$Factory
2014-04-02T16:46:23.916493 p:3720 t:2692 [LOG] > interface found: spim.progacq.AntiDrift$Factory
2014-04-02T16:46:23.916493 p:3720 t:2692 [LOG] > interface found: spim.progacq.ProgrammaticAcquisitor$AcqProgressCallback
2014-04-02T16:46:23.916493 p:3720 t:2692 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T16:46:23.916493 p:3720 t:2692 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T16:46:23.916493 p:3720 t:2692 [LOG] > interface found: java.awt.event.ActionListener
2014-04-02T16:46:23.916493 p:3720 t:2692 [LOG] > interface found: spim.SPIMAutoCalibrator$RunnableWRet
2014-04-02T16:46:23.916493 p:3720 t:2692 [LOG] > interface found: java.lang.Runnable
2014-04-02T16:46:23.947693 p:3720 t:2692 [LOG] > Attempting to install autofocus plugin Autofocus
2014-04-02T16:46:23.947693 p:3720 t:2692 [LOG] > Attempting to install autofocus plugin AutofocusDuo
2014-04-02T16:46:23.947693 p:3720 t:2692 [LOG] > Attempting to install autofocus plugin AutofocusTB
2014-04-02T16:46:23.947693 p:3720 t:2692 [LOG] > Attempting to install autofocus plugin OughtaFocus
2014-04-02T16:46:25.523296 p:3720 t:3080 [dbg] Will set property: "Core"-"Initialize" = "0"
2014-04-02T16:46:25.523296 p:3720 t:3080 [LOG] All devices unloaded.
2014-04-02T16:46:25.523296 p:3720 t:3080 [dbg] > Notification for Device: Core Property: Initialize changed to value: 0
2014-04-02T16:46:25.523296 p:3720 t:3080 [dbg] Did set property: "Core"-"Initialize" = "0"
2014-04-02T16:46:25.585696 p:3720 t:3080 [LOG] Device COM3 loaded from SerialManager and labeled as COM3
2014-04-02T16:46:25.648096 p:3720 t:3080 [LOG] Error occurred. Device MMCore::loadDevice. Failed to load device adapter "Cobolt" from "C:\Users\User\Desktop\OpenSPIM.app\mm\win32\mmgr_dal_Cobolt.dll"
2014-04-02T16:46:26.038097 p:3720 t:3080 [LOG] Device HamamatsuHam_DCAM loaded from HamamatsuHam and labeled as OrcaFlash
2014-04-02T16:46:26.740098 p:3720 t:3080 [LOG] Device Picard Twister loaded from PicardStage and labeled as Picard Twister
2014-04-02T16:46:26.740098 p:3720 t:3080 [LOG] Device Picard Z Stage loaded from PicardStage and labeled as Picard Z Stage
2014-04-02T16:46:26.740098 p:3720 t:3080 [LOG] Device Picard XY Stage loaded from PicardStage and labeled as Picard XY Stage
2014-04-02T16:46:26.740098 p:3720 t:3080 [dbg] Will set property: "Cobolt"-"Max Power" = "60.0000"
2014-04-02T16:46:26.740098 p:3720 t:3080 [dbg] Will set property: "Cobolt"-"Port" = "COM3"
2014-04-02T16:46:26.740098 p:3720 t:3080 [dbg] Will set property: "Picard Twister"-"Serial Number" = "37"
2014-04-02T16:46:26.740098 p:3720 t:3080 [dbg] Did set property: "Picard Twister"-"Serial Number" = "37"
2014-04-02T16:46:26.740098 p:3720 t:3080 [dbg] Will set property: "Picard Z Stage"-"Serial Number" = "140"
2014-04-02T16:46:26.755698 p:3720 t:3080 [dbg] Did set property: "Picard Z Stage"-"Serial Number" = "140"
2014-04-02T16:46:26.755698 p:3720 t:3080 [dbg] Will set property: "Picard XY Stage"-"Serial Number (X)" = "139"
2014-04-02T16:46:26.771298 p:3720 t:3080 [dbg] Did set property: "Picard XY Stage"-"Serial Number (X)" = "139"
2014-04-02T16:46:26.771298 p:3720 t:3080 [dbg] Will set property: "Picard XY Stage"-"Serial Number (Y)" = "141"
2014-04-02T16:46:26.802498 p:3720 t:3080 [dbg] Did set property: "Picard XY Stage"-"Serial Number (Y)" = "141"
2014-04-02T16:46:26.802498 p:3720 t:3080 [dbg] Will set property: "Picard XY Stage"-"X-Max" = "8000"
2014-04-02T16:46:26.802498 p:3720 t:3080 [dbg] Did set property: "Picard XY Stage"-"X-Max" = "8000"
2014-04-02T16:46:26.802498 p:3720 t:3080 [dbg] Will set property: "Picard XY Stage"-"X-Min" = "1"
2014-04-02T16:46:26.802498 p:3720 t:3080 [dbg] Did set property: "Picard XY Stage"-"X-Min" = "1"
2014-04-02T16:46:26.802498 p:3720 t:3080 [dbg] Will set property: "Picard XY Stage"-"Y-Max" = "8000"
2014-04-02T16:46:26.802498 p:3720 t:3080 [dbg] Did set property: "Picard XY Stage"-"Y-Max" = "8000"
2014-04-02T16:46:26.802498 p:3720 t:3080 [dbg] Will set property: "Picard XY Stage"-"Y-Min" = "1"
2014-04-02T16:46:26.802498 p:3720 t:3080 [dbg] Did set property: "Picard XY Stage"-"Y-Min" = "1"
2014-04-02T16:46:26.802498 p:3720 t:3080 [dbg] Will set property: "COM3"-"AnswerTimeout" = "500.0000"
2014-04-02T16:46:26.802498 p:3720 t:3080 [dbg] Did set property: "COM3"-"AnswerTimeout" = "500.0000"
2014-04-02T16:46:26.802498 p:3720 t:3080 [dbg] Will set property: "COM3"-"BaudRate" = "115200"
2014-04-02T16:46:26.802498 p:3720 t:3080 [dbg] Did set property: "COM3"-"BaudRate" = "115200"
2014-04-02T16:46:26.802498 p:3720 t:3080 [dbg] Will set property: "COM3"-"DelayBetweenCharsMs" = "0.0000"
2014-04-02T16:46:26.802498 p:3720 t:3080 [dbg] Did set property: "COM3"-"DelayBetweenCharsMs" = "0.0000"
2014-04-02T16:46:26.802498 p:3720 t:3080 [dbg] Will set property: "COM3"-"Handshaking" = "Off"
2014-04-02T16:46:26.802498 p:3720 t:3080 [dbg] Did set property: "COM3"-"Handshaking" = "Off"
2014-04-02T16:46:26.802498 p:3720 t:3080 [dbg] Will set property: "COM3"-"Parity" = "None"
2014-04-02T16:46:26.802498 p:3720 t:3080 [dbg] Did set property: "COM3"-"Parity" = "None"
2014-04-02T16:46:26.802498 p:3720 t:3080 [dbg] Will set property: "COM3"-"StopBits" = "1"
2014-04-02T16:46:26.802498 p:3720 t:3080 [dbg] Did set property: "COM3"-"StopBits" = "1"
2014-04-02T16:46:26.802498 p:3720 t:3080 [dbg] Will set property: "COM3"-"Verbose" = "1"
2014-04-02T16:46:26.802498 p:3720 t:3080 [dbg] Did set property: "COM3"-"Verbose" = "1"
2014-04-02T16:46:26.802498 p:3720 t:3080 [dbg] Will set property: "Core"-"Initialize" = "1"
2014-04-02T16:46:26.802498 p:3720 t:3080 [LOG] Starting initialization sequence for 5 devices...
2014-04-02T16:46:26.802498 p:3720 t:3080 [dbg] Device COM3 debug message: Attempting to set baud of COM3 to 115200
2014-04-02T16:46:26.818098 p:3720 t:3080 [dbg] Device COM3 debug message: Attempting to set flow of COM3 to none
2014-04-02T16:46:26.818098 p:3720 t:3080 [dbg] Device COM3 debug message: Attempting to set parity of COM3 to none
2014-04-02T16:46:26.833698 p:3720 t:3080 [dbg] Device COM3 debug message: Attempting to set stopBits of COM3 to 1
2014-04-02T16:46:26.849298 p:3720 t:3080 [LOG] Device COM3 initialized.
2014-04-02T16:46:27.968159 p:3720 t:3080 [LOG] Device OrcaFlash set as default camera.
2014-04-02T16:46:27.968159 p:3720 t:3080 [LOG] Device OrcaFlash initialized.
2014-04-02T16:46:27.994161 p:3720 t:3080 [LOG] Device Picard Twister initialized.
2014-04-02T16:46:28.014162 p:3720 t:3080 [LOG] Device Picard Z Stage initialized.
2014-04-02T16:46:28.050164 p:3720 t:3080 [LOG] Device Picard XY Stage set as default xyStage.
2014-04-02T16:46:28.050164 p:3720 t:3080 [LOG] Device Picard XY Stage initialized.
2014-04-02T16:46:28.050164 p:3720 t:3080 [dbg] > Notification for Device: Core Property: Initialize changed to value: 1
2014-04-02T16:46:28.050164 p:3720 t:3080 [dbg] Did set property: "Core"-"Initialize" = "1"
2014-04-02T16:46:28.050164 p:3720 t:3080 [dbg] Will set property: "Core"-"Camera" = "OrcaFlash"
2014-04-02T16:46:28.050164 p:3720 t:3080 [LOG] Camera device set to OrcaFlash
2014-04-02T16:46:28.050164 p:3720 t:3080 [dbg] > Notification for Device: Core Property: Camera changed to value: OrcaFlash
2014-04-02T16:46:28.050164 p:3720 t:3080 [dbg] Did set property: "Core"-"Camera" = "OrcaFlash"
2014-04-02T16:46:28.050164 p:3720 t:3080 [dbg] Will set property: "Core"-"Shutter" = "Cobolt"
2014-04-02T16:46:28.050164 p:3720 t:3080 [dbg] Will set property: "Core"-"Focus" = "Picard Z Stage"
2014-04-02T16:46:28.050164 p:3720 t:3080 [LOG] Focus device set to Picard Z Stage
2014-04-02T16:46:28.050164 p:3720 t:3080 [dbg] > Notification for Device: Core Property: Focus changed to value: Picard Z Stage
2014-04-02T16:46:28.050164 p:3720 t:3080 [dbg] Did set property: "Core"-"Focus" = "Picard Z Stage"
2014-04-02T16:46:28.050164 p:3720 t:3080 [dbg] Will set property: "Core"-"AutoShutter" = "1"
2014-04-02T16:46:28.050164 p:3720 t:3080 [LOG] Auto shutter ON.
2014-04-02T16:46:28.050164 p:3720 t:3080 [dbg] > Notification for Device: Core Property: AutoShutter changed to value: 1
2014-04-02T16:46:28.050164 p:3720 t:3080 [dbg] Did set property: "Core"-"AutoShutter" = "1"
2014-04-02T16:46:28.057164 p:3720 t:3080 [LOG] > 
java.lang.Exception: Line 8: Device,Cobolt,Cobolt,Cobolt
Failed to load device adapter "Cobolt" from "C:\Users\User\Desktop\OpenSPIM.app\mm\win32\mmgr_dal_Cobolt.dll"

Line 15: Property,Cobolt,Max Power,60.0000
No device with label "Cobolt"

Line 16: Property,Cobolt,Port,COM3
No device with label "Cobolt"

Line 44: Property,Core,Shutter,Cobolt
Cannot set Core property Shutter to invalid value "Cobolt"

 in Thread[AWT-EventQueue-0,6,main]
  at mmcorej.MMCoreJJNI.CMMCore_loadSystemConfiguration(Native Method)
  at mmcorej.CMMCore.loadSystemConfiguration(CMMCore.java:341)
  at org.micromanager.MMStudioMainFrame.loadSystemConfiguration(MMStudioMainFrame.java:3289)
  at org.micromanager.MMStudioMainFrame.access$2400(MMStudioMainFrame.java:155)
  at org.micromanager.MMStudioMainFrame$48.windowOpened(MMStudioMainFrame.java:1514)
  at java.awt.AWTEventMulticaster.windowOpened(AWTEventMulticaster.java:322)
  at java.awt.Window.processWindowEvent(Window.java:1862)
  at javax.swing.JFrame.processWindowEvent(JFrame.java:274)
  at java.awt.Window.processEvent(Window.java:1823)
  at java.awt.Component.dispatchEventImpl(Component.java:4652)
  at java.awt.Container.dispatchEventImpl(Container.java:2099)
  at java.awt.Window.dispatchEventImpl(Window.java:2478)
  at java.awt.Component.dispatchEvent(Component.java:4482)
  at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:644)
  at java.awt.EventQueue.access$000(EventQueue.java:85)
  at java.awt.EventQueue$1.run(EventQueue.java:603)
  at java.awt.EventQueue$1.run(EventQueue.java:601)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
  at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
  at java.awt.EventQueue$2.run(EventQueue.java:617)
  at java.awt.EventQueue$2.run(EventQueue.java:615)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
  at java.awt.EventQueue.dispatchEvent(EventQueue.java:614)
  at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269)
  at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184)
  at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174)
  at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169)
  at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161)
  at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
2014-04-02T16:46:29.586252 p:3720 t:3080 [LOG] System state cache updated.
2014-04-02T16:46:29.621254 p:3720 t:3080 [LOG] > Startup script file (C:\Users\User\Desktop\OpenSPIM.app/MMStartup.bsh) not present.
2014-04-02T16:46:32.171400 p:3720 t:3080 [dbg] Waiting for device COM3...
2014-04-02T16:46:32.171400 p:3720 t:3080 [dbg] Finished waiting.
2014-04-02T16:46:32.171400 p:3720 t:3080 [dbg] Waiting for device OrcaFlash...
2014-04-02T16:46:32.171400 p:3720 t:3080 [dbg] Finished waiting.
2014-04-02T16:46:32.171400 p:3720 t:3080 [dbg] Waiting for device Picard Twister...
2014-04-02T16:46:32.171400 p:3720 t:3080 [dbg] Finished waiting.
2014-04-02T16:46:32.171400 p:3720 t:3080 [dbg] Waiting for device Picard Z Stage...
2014-04-02T16:46:32.171400 p:3720 t:3080 [dbg] Finished waiting.
2014-04-02T16:46:32.171400 p:3720 t:3080 [dbg] Waiting for device Picard XY Stage...
2014-04-02T16:46:32.171400 p:3720 t:3080 [dbg] Finished waiting.