[OpenSPIM] WG: Re: WG: Antwort: Re: "Stack at this Z plus" problem persisting

[Luke Stuyvenberg]

Hi Edgar,

I just finished uploading a new version of the plugin that should be considerably more locale-conscious. I've checked most of the obvious features under both the German (de-DE) and United States (en-US) locales and noticed no issues. Please let me know if your troubles persist after updating Fiji!


Thanks,
Luke

On 11/07/13, Luke Stuyvenberg  wrote:
> Hi Edgar,
> 
> I believe you're correct; this is doubtless a result of the move to actual micrometer units, but to be more precise, I think I'm dealing with the strings in a non-localizable way. Somewhere, I'm trying to parse a floating point number and expecting (demanding) that the delimiter be a period -- which is blatantly unfair of me; I seem to have forgotten that this is far from an international standard! :-) I'll hopefully put out a fix before I leave today, providing I can find the source of the mistake; now that I know what I'm looking for, things should proceed much more smoothly.
> 
> 
> Thank you for your patience!
> Luke
> 
> On 11/07/13, edgar.escobar.nieto at ipt.fraunhofer.de wrote:
> > Hi Luke,
> > 
> > There was not message error and no response when launching the SPIMage acquisition plugin, that was the most surprising.
> > 
> > About the hs_err file all were the same even if I was using the Demo Camera configuration. Only using the Windows 7 64 bit PC I didn't
> > get any hs_err file.
> > 
> > Today I launch the plugin and it works again, I really don't know why it was not working on monday (even in two different PCs).
> > Surprisingly I got a message window when pressing "Stack at this Z plus" button. The message was: Couldn't create stack: For input string "3493,500", 
> > for this case 3493,500 was the currently Z position when pressing the "Stack at this Z plus" button.
> > Today I didn't get any hs_err file by the way. :-)
> > 
> > I attach two corelog files, in one the debug log option is enabled. In both corelog files the first attempt is using the demo cam hardware configuration,
> > the secon attempt is using the TIS CAM hardware configuration.
> > 
> > What I could guess from the corelog file is that the problem could be the way the value of the Z position is handled. I am not sure but I think
> > that this issue started since the resolution in the stage position values are managed as 1,5 um instead of 1 um.
> > 
> > Hope this information is useful. Thanks again.
> > 
> > Kind regards,
> > Edgar
> > 
> > 
> > _________________________________________________________________________
> > 
> > Fraunhofer-Institut für Produktionstechnologie IPT 
> > Edgar Escobar Nieto 
> > 
> > 
> > 
> > 
> > Steinbachstraße 17 
> > 52074 Aachen 
> > 
> > edgar.escobar.nieto at ipt.fraunhofer.de 
> > http://www.ipt.fraunhofer.de(http://www.ipt.fraunhofer.de/(http://www.ipt.fraunhofer.de/(http://www.ipt.fraunhofer.de/" target="1"> http://www.ipt.fraunhofer.de 
> > _________________________________________________________________________ 
> > 
> > 
> > 
> > 
> > 
> > 
> > -----Luke Stuyvenberg <stuyvenberg at wisc.edu> schrieb: ----- An: edgar.escobar.nieto at ipt.fraunhofer.de
> > Von: Luke Stuyvenberg <stuyvenberg at wisc.edu>
> > Datum: 06.11.2013 21:52
> > Kopie: openspim at openspim.org
> > Betreff: Re: WG: Re: WG: Antwort: Re: "Stack at this Z plus" problem persisting
> > 
> > Hi Edgar,
> > 
> > On 11/04/13, edgar.escobar.nieto at ipt.fraunhofer.de wrote:
> > > I attach the corelog and the error file although they don't say too much about what is the cause of the problem.
> > 
> > 
> > Curiouser and curiouser -- not a single error is produced by the plugin launch, and yet it isn't displayed? It certainly seems to be a much deeper issue than I initially suspected.
> > 
> > 
> > On 11/04/13, edgar.escobar.nieto at ipt.fraunhofer.de wrote:
> > > Now that I update Fiji again I am not able to start the plugin SPIMage Acquisition. It is so strange because
> > > even using different hardware configurations (D_cam instead of TIS_cam) it doesn't work. :-/
> > 
> > 
> > A different camera adapter had no better luck? Did it too produce an hs_err file that might be different from the others?
> > 
> > 
> > Since you aren't using the Cube, you might try enabling the further debug output, if it's not already turned on: From Micro-Manager, click Tools -> Options, and check Debug Log Enabled. This will produce significantly more output in the Core Log. (I say the absence of a Cube is an advantage in this situation; the laser is queried once per second, and in debug logging mode, the messages become difficult to sift through.) With luck, this might provide more detailed information.
> > 
> > 
> > Thank you again,
> > Luke
> > 
> > On 11/04/13, edgar.escobar.nieto at ipt.fraunhofer.de wrote:
> > > Hi Luke,
> > > 
> > > Now that I update Fiji again I am not able to start the plugin SPIMage Acquisition. It is so strange because
> > > even using different hardware configurations (D_cam instead of TIS_cam) it doesn't work. :-/
> > > 
> > > I tried also in the other computer (Win 7, 64 bit) and didn't work as well.
> > > 
> > > I attach the corelog and the error file although they don't say too much about what is the cause of the problem.
> > > 
> > > Kind regards,
> > > Edgar
> > > 
> > > 
> > > _________________________________________________________________________
> > > 
> > > Fraunhofer-Institut für Produktionstechnologie IPT 
> > > Edgar Escobar Nieto 
> > > 
> > > 
> > > 
> > > 
> > > Steinbachstraße 17 
> > > 52074 Aachen 
> > > 
> > > edgar.escobar.nieto at ipt.fraunhofer.de 
> > >
> 
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