[OpenSPIM] WG: Re: WG: Antwort: Re: "Stack at this Z plus" problem persisting

Thu Nov 7 14:28:44 CST 2013

Hi Luke,

Hopefully that is the root of the issue and you're welcome, thanks for your support.

Kind regards,
Edgar
 _________________________________________________________________________

Fraunhofer-Institut für Produktionstechnologie IPT 
Edgar Escobar Nieto  

Steinbachstraße 17 
52074 Aachen 

edgar.escobar.nieto at ipt.fraunhofer.de 
http://www.ipt.fraunhofer.de
_________________________________________________________________________

-----Luke Stuyvenberg <stuyvenberg at wisc.edu> schrieb: -----
An: edgar.escobar.nieto at ipt.fraunhofer.de
Von: Luke Stuyvenberg <stuyvenberg at wisc.edu>
Datum: 07.11.2013 20:11
Kopie: openspim at openspim.org
Betreff: Re: WG: Re: WG: Antwort: Re: "Stack at this Z plus" problem persisting

Hi Edgar,

I believe you're correct; this is doubtless a result of the move to actual micrometer units, but to be more precise, I think I'm dealing with the strings in a non-localizable way. Somewhere, I'm trying to parse a floating point number and expecting (demanding) that the delimiter be a period -- which is blatantly unfair of me; I seem to have forgotten that this is far from an international standard! :-) I'll hopefully put out a fix before I leave today, providing I can find the source of the mistake; now that I know what I'm looking for, things should proceed much more smoothly.

Thank you for your patience!
Luke

On 11/07/13, edgar.escobar.nieto at ipt.fraunhofer.de wrote:
> Hi Luke,
> 
> There was not message error and no response when launching the SPIMage acquisition plugin, that was the most surprising.
> 
> About the hs_err file all were the same even if I was using the Demo Camera configuration. Only using the Windows 7 64 bit PC I didn't
> get any hs_err file.
> 
> Today I launch the plugin and it works again, I really don't know why it was not working on monday (even in two different PCs).
> Surprisingly I got a message window when pressing "Stack at this Z plus" button. The message was: Couldn't create stack: For input string "3493,500", 
> for this case 3493,500 was the currently Z position when pressing the "Stack at this Z plus" button.
> Today I didn't get any hs_err file by the way. :-)
> 
> I attach two corelog files, in one the debug log option is enabled. In both corelog files the first attempt is using the demo cam hardware configuration,
> the secon attempt is using the TIS CAM hardware configuration.
> 
> What I could guess from the corelog file is that the problem could be the way the value of the Z position is handled. I am not sure but I think
> that this issue started since the resolution in the stage position values are managed as 1,5 um instead of 1 um.
> 
> Hope this information is useful. Thanks again.
> 
> Kind regards,
> Edgar
> 
> 
> _________________________________________________________________________
> 
> Fraunhofer-Institut für Produktionstechnologie IPT 
> Edgar Escobar Nieto 
> 
> 
> 
> 
> Steinbachstraße 17 
> 52074 Aachen 
> 
> edgar.escobar.nieto at ipt.fraunhofer.de 
> http://www.ipt.fraunhofer.de(http://www.ipt.fraunhofer.de/(http://www.ipt.fraunhofer.de/(http://www.ipt.fraunhofer.de/" target="1"> http://www.ipt.fraunhofer.de 
> _________________________________________________________________________ 
> 
> 
> 
> 
> 
> 
> -----Luke Stuyvenberg <stuyvenberg at wisc.edu> schrieb: ----- An: edgar.escobar.nieto at ipt.fraunhofer.de
> Von: Luke Stuyvenberg <stuyvenberg at wisc.edu>
> Datum: 06.11.2013 21:52
> Kopie: openspim at openspim.org
> Betreff: Re: WG: Re: WG: Antwort: Re: "Stack at this Z plus" problem persisting
> 
> Hi Edgar,
> 
> On 11/04/13, edgar.escobar.nieto at ipt.fraunhofer.de wrote:
> > I attach the corelog and the error file although they don't say too much about what is the cause of the problem.
> 
> 
> Curiouser and curiouser -- not a single error is produced by the plugin launch, and yet it isn't displayed? It certainly seems to be a much deeper issue than I initially suspected.
> 
> 
> On 11/04/13, edgar.escobar.nieto at ipt.fraunhofer.de wrote:
> > Now that I update Fiji again I am not able to start the plugin SPIMage Acquisition. It is so strange because
> > even using different hardware configurations (D_cam instead of TIS_cam) it doesn't work. :-/
> 
> 
> A different camera adapter had no better luck? Did it too produce an hs_err file that might be different from the others?
> 
> 
> Since you aren't using the Cube, you might try enabling the further debug output, if it's not already turned on: From Micro-Manager, click Tools -> Options, and check Debug Log Enabled. This will produce significantly more output in the Core Log. (I say the absence of a Cube is an advantage in this situation; the laser is queried once per second, and in debug logging mode, the messages become difficult to sift through.) With luck, this might provide more detailed information.
> 
> 
> Thank you again,
> Luke
> 
> On 11/04/13, edgar.escobar.nieto at ipt.fraunhofer.de wrote:
> > Hi Luke,
> > 
> > Now that I update Fiji again I am not able to start the plugin SPIMage Acquisition. It is so strange because
> > even using different hardware configurations (D_cam instead of TIS_cam) it doesn't work. :-/
> > 
> > I tried also in the other computer (Win 7, 64 bit) and didn't work as well.
> > 
> > I attach the corelog and the error file although they don't say too much about what is the cause of the problem.
> > 
> > Kind regards,
> > Edgar
> > 
> > 
> > _________________________________________________________________________
> > 
> > Fraunhofer-Institut fr Produktionstechnologie IPT 
> > Edgar Escobar Nieto 
> > 
> > 
> > 
> > 
> > Steinbachstraáe 17 
> > 52074 Aachen 
> > 
> > edgar.escobar.nieto at ipt.fraunhofer.de 
> >
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