[OpenSPIM] Bio-Formats
Dr S. Hoehn
S.Hoehn at damtp.cam.ac.uk
Fri Jan 12 08:13:57 CST 2018
Dear All,
I had to re-install the Fiji-OpenSPIM software after replacing my C
drive.
I enabled the update sites for Java-8 and Bio-Formats and updated Fiji.
Now I am getting the following error when starting the Micro-Manager
plugin (before starting the OpenSPIM-Plugin in Micro-Manager):
"Jan 12, 2018 2:07:03 PM java.util.prefs.WindowsPreferences openKey
WARNING: Could not open windows registry node
Software\JavaSoft\Prefs\org\micromanager at root 0x80000002. Windows
RegOpenKey(...) returned error code 5."
The acquisition seems to work, but whenever I try to open a single
z-stack (ome.tif) Bio-Formats tries to open the entire time-lapse (and
fails mostly cause they are too big).
This only happens with data I acquired after re-installing Fiji. When I
drag an older ome.tif file into Fiji, it opens it without even starting
Bio-Formats.
Does anyone have an idea what else I need to do? Is this a problem with
Java or with Fiji or Bio-Formats?
I have noticed before that when dragging data into Fiji, it opens the
Bio-Formats window for some data, but not for others. Why is that?
Thank you very much for any input.
Best wishes,
Stephanie
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