[OpenSPIM] Is there other software to display the 3D-data, except BigDataViewer

[Michael Weber]

Hi Zheng,

another, quite powerful free 3D software is FluoRender:

http://www.sci.utah.edu/software/fluorender.html

Best,
Michael


On Oct 29, 2015, at 4:35 PM, Pavel Tomancak <tomancak at mpi-cbg.de> wrote:

> Dear Zheng,
> 
>>      Hi, everyone. Sorry to disturb you. I use the BigdataViewer to display the SPIM-data-stack, but it seems that the bigdataViewer's display-mode is just showing only a slice of the 3D-data, not showing the data in a 3D mode(like the solidworks).
> 
> The BDV is a slice viewer. 3D rendering is in the works, but not yet ready for prime-time.
> 
>>      I want a software to show SPIM-data in a 3D-mode. If everyone have this kind of software, please recommend it to me.
> 
> One possibility i Fiji is the new ClearVolume plugin. 3D viewer also works, although probably not on the full resolution data. Other open source softwares that are good with 3D visualisation are Vaa3D and Icy.
> 
> In the commercial realm I would recommend Imaris or Arivis.
> 
> All the best
> 
> PAvel
> 
>>      Or has anyone tried to use matlab to display the data?
>>      Thank you!
>> 
>> Best wishes!
>> 
>> ------------------
>> Zheng Huang
>> State Key Laboratory of High Field Laser Physics, Shanghai Institute of Optics and Fine Mechanics, Chinese Academy of Sciences, Shanghai 201800, China
>> Address: Qinghe Road No. 390, Jiading District, Shanghai 201800, China 
>> Tel: 13120836853
>> E-mail: 709314090 at qq.com
>> _______________________________________________
>> OpenSPIM mailing list
>> OpenSPIM at openspim.org
>> http://openspim.org/mailman/listinfo/openspim
> 
> _______________________________________________
> OpenSPIM mailing list
> OpenSPIM at openspim.org
> http://openspim.org/mailman/listinfo/openspim

_____________

Michael Weber
Postdoc, Huisken lab
Max Planck Institute of Molecular Cell Biology and Genetics
Pfotenhauerstrasse 108, 01307 Dresden
Tel. 0049 351/2102837

http://www.mpi-cbg.de/huisken

-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://openspim.org/pipermail/openspim/attachments/20151102/7158e137/attachment-0002.html>