[OpenSPIM] OpenSPIM plugin not opening

[Ulrik Günther]

  Hello Rob,


the changes required for the Obis to work are now in the mainline code at https://github.com/openspim/SPIMAcquisition/ - so if you pull it and rebuild the plugin, you should be good to go!


We already ran two timelapse acquisitions with the Obis, no problems so far. Anyway, should you experience such, please let us know!


cheers!


ulrik


—
Ulrik Günther, Dipl.-Phys.
PhD Student
MOSAIC Group & Tomancak Lab, Center of Systems Biology Dresden
Max Planck Institute of Molecular Cell Biology and Genetics
Pfotenhauerstr. 108, D-01307 Dresden, Germany



E-Mail: guenther at mpi-cbg.de




> On Mar 18, 2015, at 5:32 PM, Ulrik Günther <guenther at mpi-cbg.de> wrote:
> 
> 
> Hello Rob,
> 
> 
> it is indeed a rather obscure problem with different laser drivers in MM reporting their power in different units. 
> 
> 
> The good news is, we got the Obis working :-) The fix will hopefully come to the main SPIMacquisition repository tomorrow after some more testing.
> 
> 
> If you absolutely need it right now, you can get my testing version from https://github.com/skalarproduktraum/SPIMAcquisition/archive/CoherentOBISSupport.zip - but your mileage may vary ;)
> Then, follow the same steps as you did before for compiling it.
> 
> 
> If you have any questions, let me know :)
> 
> 
> cheers,
> 
> 
> ulrik
> 
> 
> —
> Ulrik Günther, Dipl.-Phys.
> PhD Student
> MOSAIC Group & Tomancak Lab, Center of Systems Biology Dresden
> Max Planck Institute of Molecular Cell Biology and Genetics
> Pfotenhauerstr. 108, D-01307 Dresden, Germany
> 
> 
> 
> E-Mail: guenther at mpi-cbg.de
> 
> 
> 
> 
>> On Mar 17, 2015, at 1:01 PM, Robert Konstandelos <rk685 at york.ac.uk> wrote:
>> 
>> 
>> Hi Ulrik,
>> 
>> 
>> Thanks. I hope you can get it to work! The compiles seems right if you would like to use that. I may had missed something obscure.
>> 
>> 
>> Cheers/danke  
>> 
>> 
>> Rob
>> 
>> 
>> On 17 March 2015 at 11:53, Ulrik Günther <guenther at mpi-cbg.de
>>>wrote:
>>> 
>>> Hi Rob,
>>> 
>>> 
>>> we’re hopefully getting an Obis tomorrow - I’ll try to get it running asap and then let you know what steps you have to take :-)
>>> 
>>> 
>>> cheers,
>>> 
>>> 
>>> ulrik
>>> 
>>> 
>>> 
>>> 
>>> —
>>> Ulrik Günther, Dipl.-Phys.
>>> PhD Student
>>> MOSAIC Group & Tomancak Lab, Center of Systems Biology Dresden
>>> Max Planck Institute of Molecular Cell Biology and Genetics
>>> Pfotenhauerstr. 108, D-01307 Dresden, Germany
>>> 
>>> 
>>> 
>>> E-Mail: guenther at mpi-cbg.de
>>> 
>>> 
>>> 
>>> 
>>> 
>>>> On Mar 16, 2015, at 11:10 PM, Robert Konstandelos <rk685 at york.ac.uk
>>>>> wrote:
>>>> 
>>>> 
>>>> Hi all,
>>>> 
>>>> 
>>>> As you maybe aware from the OpenSPIM digest vol23, issue 2 I have been trying to get my Coherent OBIS to work with your plugin on Micro-Manager.
>>>> 
>>>> 
>>>> I have had a lot of assistance already from Graham Marquart- which I greatly appreciate- taking the download of the SPIM acquisition plugin to constructing the required plugin using Maven. I alter your CoherentCube java file to that which has Coherent Obis instead. Then Create the executable files using maven with each install resulting in a build success. 
>>>> 
>>>> 
>>>> I copy the resulting plugin from the new target folder to the mmplugins folder and subsequently run Fiji with MM- the developmental version which installed with the latest version of Fiji. I tried to run the app but the app does not open. It fails.
>>>> 
>>>> 
>>>> I have attached the error report generated by Micro-Manager to see where my error might be? I have also attached the compile Graham had wrote for me which has done an excellent job. 
>>>> 
>>>> 
>>>> I apologise for having to bring this issue up again but I am not the greatest when it comes to coding.
>>>> 
>>>> 
>>>> Thanks 
>>>> 
>>>> 
>>>> Rob
>>>> 
>>>> 
>>>> 
>>>> 
>>>> 
>>>> 
>>>> 
>>>> _______________________________________________
>>>> OpenSPIM mailing list
>>>> OpenSPIM at openspim.org
>>>> 
>>>> http://openspim.org/mailman/listinfo/openspim
>>>> 
>>>> 
>>>> 
>>> 
>> 
>> 
> 
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