[OpenSPIM] Picard hi-res stage

Monika Pawłowska m.pawlowska at nencki.gov.pl
Thu Jan 22 09:50:27 CST 2015


Hi Ulrik & Johannes,

I hope this is the screenshot you need. Not much in it though.

What I meant about two separate issues is that there is on one hand the  
32767 limit and on the other - the value 9000 which is hard-coded in  
several places as Johannes noted. (My programming skills are rusty these  
days, but from my undergrad times I remember that hard-coding constants  
into random places in code is not nice. :) )

Regards,
Monika

W dniu .01.2015 o 14:58 Johannes Schindelin <johannes.schindelin at gmx.de>  
pisze:

> Hi Ulrik & Monika,
>
> On 2015-01-22 14:48, Ulrik Günther wrote:
>
>> On Jan 22, 2015, at 11:54 AM, Monika Pawłowska  
>> <m.pawlowska at nencki.gov.pl> wrote:
>>
>>> thanks to the help of Ulrik I was able to install and run the OpenSPIM 
>>> plugin in my lab.
>>> Glad it worked for you :-)
>>>  -integer range issue: I have bought the new Hi-Res Picard stage which  
>>> cando 45 000 steps. However, in the OpenSPIM plugin I can only do 32  
>>> 767steps (16bit integer range if I'm not wrong)
>>>
>>  I doubt the OpenSPIM plugin even knows about the existence of a
>> high-res version of the stage, but we can incorporate that.
>
> I guess it is time to address the TODO here:
>
> https://github.com/openspim/SPIMAcquisition/blob/d0276596c91b5764b21b11146a60e248f5f74506/src/main/java/spim/SPIMAcquisition.java#L124-L126
>
> and while at it, we must not forget
>
> https://github.com/openspim/SPIMAcquisition/blob/d0276596c91b5764b21b11146a60e248f5f74506/src/main/java/spim/setup/PicardStage.java#L34-L42
>
> nor
>
> https://github.com/openspim/SPIMAcquisition/blob/d0276596c91b5764b21b11146a60e248f5f74506/src/main/java/spim/setup/PicardXYStage.java#L51-L59
>
> Ciao,
> Johannes
>
> P.S.: I cheated and let Git do all the work: `git grep 9000`...


-- 
Monika Pawłowska
Nencki Institute
Laboratory of Neurobiology
3, Pasteur Street
02-093 Warsaw, Poland
phone: (+48) 22 5892 427
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