[OpenSPIM] Best practices for using a different camera?
Gabriel Davis Jones
gabriel.jones at florey.edu.au
Wed Jan 21 17:49:27 CST 2015
Hi Ulrik,
Thanks so much for your help.
I tried to run micromanager from the package you provided, but whenever I try and add the Andor SDK3, the whole program crashes.
The error log created has the following:
#
# A fatal error has been detected by the Java Runtime Environment:
#
# EXCEPTION_UNCAUGHT_CXX_EXCEPTION (0xe06d7363) at pc=0x000007fefdb2cacd, pid=2964, tid=4296
#
# JRE version: 6.0_31-b05
# Java VM: Java HotSpot(TM) 64-Bit Server VM (20.6-b01 mixed mode windows-amd64 compressed oops)
# Problematic frame:
# C [KERNELBASE.dll+0xcacd]
#
# If you would like to submit a bug report, please visit:
# http://java.sun.com/webapps/bugreport/crash.jsp
# The crash happened outside the Java Virtual Machine in native code.
# See problematic frame for where to report the bug.
#
--------------- T H R E A D ---------------
Current thread (0x0000000010175800): JavaThread "AWT-EventQueue-0" [_thread_in_native, id=4296, stack(0x0000000012500000,0x0000000012700000)]
siginfo: ExceptionCode=0xe06d7363, ExceptionInformation=0x0000000019930520 0x00000000126f79d0 0x000007feea5133e8 0x000007feea4b0000
Registers:
RAX=0x000000006516301e, RBX=0x00000000126f79d0, RCX=0x00000000126f71d0, RDX=0x00000000000000d0
RSP=0x00000000126f77e0, RBP=0x00000000126f7910, RSI=0x00000000126f7fa0, RDI=0x000007feea5133e8
R8 =0x0000000000000000, R9 =0x0000000000000000, R10=0x000007feea4b0000, R11=0x00000000126f7820
R12=0x0000000000000000, R13=0x000007feea518840, R14=0xffffffffffffffff, R15=0x0000000010175800
RIP=0x000007fefdb2cacd, EFLAGS=0x0000000000000206
Top of Stack: (sp=0x00000000126f77e0)
0x00000000126f77e0: 00000000126f79d0 00000000126f7fa0
0x00000000126f77f0: 000007feea5133e8 000007feea4e443f
0x00000000126f7800: 00000001e06d7363 0000000000000000
0x00000000126f7810: 000007fefdb2cacd 000007fe00000004
0x00000000126f7820: 0000000019930520 00000000126f79d0
0x00000000126f7830: 000007feea5133e8 000007feea4b0000
0x00000000126f7840: 000007fef919c728 00000000126f78c8
0x00000000126f7850: 00000000126f78b0 00000000656b3b02
0x00000000126f7860: 000000000ca0ecc0 00000000656a20f2
0x00000000126f7870: 00000000126f79e8 000007feea4b5a84
0x00000000126f7880: ffffffffffffffff 000007feea518840
0x00000000126f7890: 0000000000000000 000007feea5133e8
0x00000000126f78a0: 00000000126f7fa0 000007feea4e08a9
0x00000000126f78b0: 00000000126f79d0 00000000126f7920
0x00000000126f78c0: 000007fe00000001 000007feea4b00f8
0x00000000126f78d0: 00000001e06d7363 0000000000000000
Instructions: (pc=0x000007fefdb2cacd)
0x000007fefdb2caad: 54 24 24 48 89 4c 24 28 4d 85 c9 0f 85 e0 06 00
0x000007fefdb2cabd: 00 89 4c 24 38 48 8d 4c 24 20 ff 15 d3 e7 03 00
0x000007fefdb2cacd: 48 81 c4 c8 00 00 00 c3 90 90 90 90 90 90 90 90
0x000007fefdb2cadd: 90 90 90 48 89 5c 24 18 55 41 54 41 55 41 56 41
Register to memory mapping:
RAX=0x000000006516301e is an unknown value
RBX=0x00000000126f79d0 is pointing into the stack for thread: 0x0000000010175800
RCX=0x00000000126f71d0 is pointing into the stack for thread: 0x0000000010175800
RDX=0x00000000000000d0 is an unknown value
RSP=0x00000000126f77e0 is pointing into the stack for thread: 0x0000000010175800
RBP=0x00000000126f7910 is pointing into the stack for thread: 0x0000000010175800
RSI=0x00000000126f7fa0 is pointing into the stack for thread: 0x0000000010175800
RDI=0x000007feea5133e8 is an unknown value
R8 =0x0000000000000000 is an unknown value
R9 =0x0000000000000000 is an unknown value
R10=0x000007feea4b0000 is an unknown value
R11=0x00000000126f7820 is pointing into the stack for thread: 0x0000000010175800
R12=0x0000000000000000 is an unknown value
R13=0x000007feea518840 is an unknown value
R14=0xffffffffffffffff is an unknown value
R15=0x0000000010175800 is a thread
Stack: [0x0000000012500000,0x0000000012700000], sp=0x00000000126f77e0, free space=2013k
Native frames: (J=compiled Java code, j=interpreted, Vv=VM code, C=native code)
C [KERNELBASE.dll+0xcacd] RaiseException+0x3d
C [mmgr_dal_AndorSDK3.dll+0x13d39] DeleteDevice+0x128d9
Java frames: (J=compiled Java code, j=interpreted, Vv=VM code)
j mmcorej.MMCoreJJNI.CMMCore_initializeDevice(JLmmcorej/CMMCore;Ljava/lang/String;)V+0
j mmcorej.CMMCore.initializeDevice(Ljava/lang/String;)V+6
j org.micromanager.conf2.DeviceSetupDlg.initializeDevice()Z+150
j org.micromanager.conf2.DeviceSetupDlg.onOK()V+298
j org.micromanager.conf2.DeviceSetupDlg$1.actionPerformed(Ljava/awt/event/ActionEvent;)V+4
j javax.swing.AbstractButton.fireActionPerformed(Ljava/awt/event/ActionEvent;)V+84
j javax.swing.AbstractButton$Handler.actionPerformed(Ljava/awt/event/ActionEvent;)V+5
j javax.swing.DefaultButtonModel.fireActionPerformed(Ljava/awt/event/ActionEvent;)V+35
j javax.swing.DefaultButtonModel.setPressed(Z)V+117
j javax.swing.plaf.basic.BasicButtonListener.mouseReleased(Ljava/awt/event/MouseEvent;)V+35
j java.awt.Component.processMouseEvent(Ljava/awt/event/MouseEvent;)V+64
j javax.swing.JComponent.processMouseEvent(Ljava/awt/event/MouseEvent;)V+23
j java.awt.Component.processEvent(Ljava/awt/AWTEvent;)V+81
j java.awt.Container.processEvent(Ljava/awt/AWTEvent;)V+18
j java.awt.Component.dispatchEventImpl(Ljava/awt/AWTEvent;)V+570
j java.awt.Container.dispatchEventImpl(Ljava/awt/AWTEvent;)V+42
j java.awt.Component.dispatchEvent(Ljava/awt/AWTEvent;)V+2
j java.awt.LightweightDispatcher.retargetMouseEvent(Ljava/awt/Component;ILjava/awt/event/MouseEvent;)V+320
j java.awt.LightweightDispatcher.processMouseEvent(Ljava/awt/event/MouseEvent;)Z+139
j java.awt.LightweightDispatcher.dispatchEvent(Ljava/awt/AWTEvent;)Z+50
j java.awt.Container.dispatchEventImpl(Ljava/awt/AWTEvent;)V+12
j java.awt.Window.dispatchEventImpl(Ljava/awt/AWTEvent;)V+65
j java.awt.Component.dispatchEvent(Ljava/awt/AWTEvent;)V+2
j java.awt.EventQueue.dispatchEventImpl(Ljava/awt/AWTEvent;Ljava/lang/Object;)V+41
j java.awt.EventQueue.access$000(Ljava/awt/EventQueue;Ljava/awt/AWTEvent;Ljava/lang/Object;)V+3
j java.awt.EventQueue$1.run()Ljava/lang/Void;+12
j java.awt.EventQueue$1.run()Ljava/lang/Object;+1
v ~StubRoutines::call_stub
j java.security.AccessController.doPrivileged(Ljava/security/PrivilegedAction;Ljava/security/AccessControlContext;)Ljava/lang/Object;+0
j java.security.AccessControlContext$1.doIntersectionPrivilege(Ljava/security/PrivilegedAction;Ljava/security/AccessControlContext;Ljava/security/AccessControlContext;)Ljava/lang/Object;+28
j java.security.AccessControlContext$1.doIntersectionPrivilege(Ljava/security/PrivilegedAction;Ljava/security/AccessControlContext;)Ljava/lang/Object;+6
j java.awt.EventQueue$2.run()Ljava/lang/Void;+11
j java.awt.EventQueue$2.run()Ljava/lang/Object;+1
v ~StubRoutines::call_stub
j java.security.AccessController.doPrivileged(Ljava/security/PrivilegedAction;Ljava/security/AccessControlContext;)Ljava/lang/Object;+0
j java.security.AccessControlContext$1.doIntersectionPrivilege(Ljava/security/PrivilegedAction;Ljava/security/AccessControlContext;Ljava/security/AccessControlContext;)Ljava/lang/Object;+28
j java.awt.EventQueue.dispatchEvent(Ljava/awt/AWTEvent;)V+73
j java.awt.EventDispatchThread.pumpOneEventForFilters(I)Z+204
j java.awt.EventDispatchThread.pumpEventsForFilter(ILjava/awt/Conditional;Ljava/awt/EventFilter;)V+30
j java.awt.EventDispatchThread.pumpEventsForFilter(Ljava/awt/Conditional;Ljava/awt/EventFilter;)V+4
j java.awt.Dialog$1.run()V+23
j java.awt.Dialog$3.run()Ljava/lang/Object;+4
v ~StubRoutines::call_stub
J java.security.AccessController.doPrivileged(Ljava/security/PrivilegedAction;)Ljava/lang/Object;
j java.awt.Dialog.show()V+223
j java.awt.Component.show(Z)V+5
j java.awt.Component.setVisible(Z)V+2
j java.awt.Window.setVisible(Z)V+2
j java.awt.Dialog.setVisible(Z)V+2
j org.micromanager.conf2.DevicesPage.addDevice()Z+280
j org.micromanager.conf2.DevicesPage.access$100(Lorg/micromanager/conf2/DevicesPage;)Z+1
j org.micromanager.conf2.DevicesPage$TreeMouseListener.mousePressed(Ljava/awt/event/MouseEvent;)V+12
j java.awt.AWTEventMulticaster.mousePressed(Ljava/awt/event/MouseEvent;)V+21
j java.awt.Component.processMouseEvent(Ljava/awt/event/MouseEvent;)V+54
j javax.swing.JComponent.processMouseEvent(Ljava/awt/event/MouseEvent;)V+23
j java.awt.Component.processEvent(Ljava/awt/AWTEvent;)V+81
j java.awt.Container.processEvent(Ljava/awt/AWTEvent;)V+18
j java.awt.Component.dispatchEventImpl(Ljava/awt/AWTEvent;)V+570
j java.awt.Container.dispatchEventImpl(Ljava/awt/AWTEvent;)V+42
j java.awt.Component.dispatchEvent(Ljava/awt/AWTEvent;)V+2
j java.awt.LightweightDispatcher.retargetMouseEvent(Ljava/awt/Component;ILjava/awt/event/MouseEvent;)V+320
j java.awt.LightweightDispatcher.processMouseEvent(Ljava/awt/event/MouseEvent;)Z+126
j java.awt.LightweightDispatcher.dispatchEvent(Ljava/awt/AWTEvent;)Z+50
j java.awt.Container.dispatchEventImpl(Ljava/awt/AWTEvent;)V+12
j java.awt.Window.dispatchEventImpl(Ljava/awt/AWTEvent;)V+65
j java.awt.Component.dispatchEvent(Ljava/awt/AWTEvent;)V+2
j java.awt.EventQueue.dispatchEventImpl(Ljava/awt/AWTEvent;Ljava/lang/Object;)V+41
j java.awt.EventQueue.access$000(Ljava/awt/EventQueue;Ljava/awt/AWTEvent;Ljava/lang/Object;)V+3
j java.awt.EventQueue$1.run()Ljava/lang/Void;+12
j java.awt.EventQueue$1.run()Ljava/lang/Object;+1
v ~StubRoutines::call_stub
j java.security.AccessController.doPrivileged(Ljava/security/PrivilegedAction;Ljava/security/AccessControlContext;)Ljava/lang/Object;+0
j java.security.AccessControlContext$1.doIntersectionPrivilege(Ljava/security/PrivilegedAction;Ljava/security/AccessControlContext;Ljava/security/AccessControlContext;)Ljava/lang/Object;+28
j java.security.AccessControlContext$1.doIntersectionPrivilege(Ljava/security/PrivilegedAction;Ljava/security/AccessControlContext;)Ljava/lang/Object;+6
j java.awt.EventQueue$2.run()Ljava/lang/Void;+11
j java.awt.EventQueue$2.run()Ljava/lang/Object;+1
v ~StubRoutines::call_stub
j java.security.AccessController.doPrivileged(Ljava/security/PrivilegedAction;Ljava/security/AccessControlContext;)Ljava/lang/Object;+0
j java.security.AccessControlContext$1.doIntersectionPrivilege(Ljava/security/PrivilegedAction;Ljava/security/AccessControlContext;Ljava/security/AccessControlContext;)Ljava/lang/Object;+28
j java.awt.EventQueue.dispatchEvent(Ljava/awt/AWTEvent;)V+73
j java.awt.EventDispatchThread.pumpOneEventForFilters(I)Z+204
j java.awt.EventDispatchThread.pumpEventsForFilter(ILjava/awt/Conditional;Ljava/awt/EventFilter;)V+30
j java.awt.EventDispatchThread.pumpEventsForFilter(Ljava/awt/Conditional;Ljava/awt/EventFilter;)V+4
j java.awt.Dialog$1.run()V+23
j java.awt.Dialog$3.run()Ljava/lang/Object;+4
v ~StubRoutines::call_stub
J java.security.AccessController.doPrivileged(Ljava/security/PrivilegedAction;)Ljava/lang/Object;
j java.awt.Dialog.show()V+223
j java.awt.Component.show(Z)V+5
j java.awt.Component.setVisible(Z)V+2
j java.awt.Window.setVisible(Z)V+2
j java.awt.Dialog.setVisible(Z)V+2
j org.micromanager.MMStudioMainFrame.runHardwareWizard()V+140
j org.micromanager.MMStudioMainFrame.access$2400(Lorg/micromanager/MMStudioMainFrame;)V+1
j org.micromanager.MMStudioMainFrame$40.run()V+4
j org.micromanager.utils.GUIUtils$3.actionPerformed(Ljava/awt/event/ActionEvent;)V+4
j javax.swing.AbstractButton.fireActionPerformed(Ljava/awt/event/ActionEvent;)V+84
j javax.swing.AbstractButton$Handler.actionPerformed(Ljava/awt/event/ActionEvent;)V+5
j javax.swing.DefaultButtonModel.fireActionPerformed(Ljava/awt/event/ActionEvent;)V+35
j javax.swing.DefaultButtonModel.setPressed(Z)V+117
j javax.swing.AbstractButton.doClick(I)V+64
j javax.swing.plaf.basic.BasicMenuItemUI.doClick(Ljavax/swing/MenuSelectionManager;)V+53
j javax.swing.plaf.basic.BasicMenuItemUI$Handler.mouseReleased(Ljava/awt/event/MouseEvent;)V+62
j java.awt.AWTEventMulticaster.mouseReleased(Ljava/awt/event/MouseEvent;)V+8
j java.awt.Component.processMouseEvent(Ljava/awt/event/MouseEvent;)V+64
j javax.swing.JComponent.processMouseEvent(Ljava/awt/event/MouseEvent;)V+23
j java.awt.Component.processEvent(Ljava/awt/AWTEvent;)V+81
j java.awt.Container.processEvent(Ljava/awt/AWTEvent;)V+18
j java.awt.Component.dispatchEventImpl(Ljava/awt/AWTEvent;)V+570
j java.awt.Container.dispatchEventImpl(Ljava/awt/AWTEvent;)V+42
j java.awt.Component.dispatchEvent(Ljava/awt/AWTEvent;)V+2
j java.awt.LightweightDispatcher.retargetMouseEvent(Ljava/awt/Component;ILjava/awt/event/MouseEvent;)V+320
j java.awt.LightweightDispatcher.processMouseEvent(Ljava/awt/event/MouseEvent;)Z+139
j java.awt.LightweightDispatcher.dispatchEvent(Ljava/awt/AWTEvent;)Z+50
j java.awt.Container.dispatchEventImpl(Ljava/awt/AWTEvent;)V+12
j java.awt.Window.dispatchEventImpl(Ljava/awt/AWTEvent;)V+65
j java.awt.Component.dispatchEvent(Ljava/awt/AWTEvent;)V+2
j java.awt.EventQueue.dispatchEventImpl(Ljava/awt/AWTEvent;Ljava/lang/Object;)V+41
j java.awt.EventQueue.access$000(Ljava/awt/EventQueue;Ljava/awt/AWTEvent;Ljava/lang/Object;)V+3
j java.awt.EventQueue$1.run()Ljava/lang/Void;+12
j java.awt.EventQueue$1.run()Ljava/lang/Object;+1
v ~StubRoutines::call_stub
j java.security.AccessController.doPrivileged(Ljava/security/PrivilegedAction;Ljava/security/AccessControlContext;)Ljava/lang/Object;+0
j java.security.AccessControlContext$1.doIntersectionPrivilege(Ljava/security/PrivilegedAction;Ljava/security/AccessControlContext;Ljava/security/AccessControlContext;)Ljava/lang/Object;+28
j java.security.AccessControlContext$1.doIntersectionPrivilege(Ljava/security/PrivilegedAction;Ljava/security/AccessControlContext;)Ljava/lang/Object;+6
j java.awt.EventQueue$2.run()Ljava/lang/Void;+11
j java.awt.EventQueue$2.run()Ljava/lang/Object;+1
v ~StubRoutines::call_stub
j java.security.AccessController.doPrivileged(Ljava/security/PrivilegedAction;Ljava/security/AccessControlContext;)Ljava/lang/Object;+0
j java.security.AccessControlContext$1.doIntersectionPrivilege(Ljava/security/PrivilegedAction;Ljava/security/AccessControlContext;Ljava/security/AccessControlContext;)Ljava/lang/Object;+28
j java.awt.EventQueue.dispatchEvent(Ljava/awt/AWTEvent;)V+73
j java.awt.EventDispatchThread.pumpOneEventForFilters(I)Z+204
j java.awt.EventDispatchThread.pumpEventsForFilter(ILjava/awt/Conditional;Ljava/awt/EventFilter;)V+30
j java.awt.EventDispatchThread.pumpEventsForHierarchy(ILjava/awt/Conditional;Ljava/awt/Component;)V+11
j java.awt.EventDispatchThread.pumpEvents(ILjava/awt/Conditional;)V+4
j java.awt.EventDispatchThread.pumpEvents(Ljava/awt/Conditional;)V+3
j java.awt.EventDispatchThread.run()V+9
v ~StubRoutines::call_stub
--------------- P R O C E S S ---------------
Java Threads: ( => current thread )
0x0000000015e22000 JavaThread "BeanShell interpreter" [_thread_blocked, id=5880, stack(0x0000000017600000,0x0000000017800000)]
0x0000000015e21000 JavaThread "Thread-4" [_thread_blocked, id=3804, stack(0x00000000162e0000,0x00000000164e0000)]
0x000000000fff7800 JavaThread "TimerQueue" daemon [_thread_blocked, id=4484, stack(0x0000000014bb0000,0x0000000014db0000)]
0x000000000057e000 JavaThread "DestroyJavaVM" [_thread_blocked, id=6072, stack(0x0000000000030000,0x0000000000230000)]
0x000000001002a800 JavaThread "SciJava-ba3bc8c-Thread-1" [_thread_blocked, id=4924, stack(0x0000000014310000,0x0000000014510000)]
0x0000000010223000 JavaThread "SciJava-ba3bc8c-Thread-0" [_thread_blocked, id=2944, stack(0x0000000012700000,0x0000000012900000)]
=>0x0000000010175800 JavaThread "AWT-EventQueue-0" [_thread_in_native, id=4296, stack(0x0000000012500000,0x0000000012700000)]
0x0000000010385000 JavaThread "AWT-Windows" daemon [_thread_in_native, id=4136, stack(0x0000000012300000,0x0000000012500000)]
0x0000000010dc1800 JavaThread "AWT-Shutdown" [_thread_blocked, id=3984, stack(0x0000000012100000,0x0000000012300000)]
0x0000000010354000 JavaThread "Java2D Disposer" daemon [_thread_blocked, id=1844, stack(0x0000000011f00000,0x0000000012100000)]
0x000000000632f800 JavaThread "Low Memory Detector" daemon [_thread_blocked, id=5756, stack(0x000000000e390000,0x000000000e590000)]
0x0000000006324000 JavaThread "C2 CompilerThread1" daemon [_thread_blocked, id=5804, stack(0x000000000e190000,0x000000000e390000)]
0x000000000631c000 JavaThread "C2 CompilerThread0" daemon [_thread_blocked, id=4576, stack(0x000000000df90000,0x000000000e190000)]
0x000000000631b000 JavaThread "Attach Listener" daemon [_thread_blocked, id=6020, stack(0x000000000dd90000,0x000000000df90000)]
0x0000000006318000 JavaThread "Signal Dispatcher" daemon [_thread_blocked, id=3880, stack(0x000000000db90000,0x000000000dd90000)]
0x000000000d5d0800 JavaThread "Surrogate Locker Thread (Concurrent GC)" daemon [_thread_blocked, id=5784, stack(0x000000000d990000,0x000000000db90000)]
0x0000000006305000 JavaThread "Finalizer" daemon [_thread_blocked, id=4068, stack(0x000000000d390000,0x000000000d590000)]
0x00000000062ff000 JavaThread "Reference Handler" daemon [_thread_blocked, id=5868, stack(0x000000000d190000,0x000000000d390000)]
Other Threads:
0x00000000062fa000 VMThread [stack: 0x000000000cf90000,0x000000000d190000] [id=4260]
0x000000000d5da000 WatcherThread [stack: 0x000000000e590000,0x000000000e790000] [id=3532]
VM state:not at safepoint (normal execution)
VM Mutex/Monitor currently owned by a thread: None
Heap
par new generation total 19136K, used 10690K [0x000000077b000000, 0x000000077c4c0000, 0x0000000782cc0000)
eden space 17024K, 50% used [0x000000077b000000, 0x000000077b8608e0, 0x000000077c0a0000)
from space 2112K, 100% used [0x000000077c0a0000, 0x000000077c2b0000, 0x000000077c2b0000)
to space 2112K, 0% used [0x000000077c2b0000, 0x000000077c2b0000, 0x000000077c4c0000)
concurrent mark-sweep generation total 63872K, used 22029K [0x0000000782cc0000, 0x0000000786b20000, 0x00000007f8000000)
concurrent-mark-sweep perm gen total 131072K, used 65428K [0x00000007f8000000, 0x0000000800000000, 0x0000000800000000)
Code Cache [0x0000000002670000, 0x0000000002a70000, 0x0000000005670000)
total_blobs=1681 nmethods=1018 adapters=615 free_code_cache=46259456 largest_free_block=33536
Dynamic libraries:
0x0000000000400000 - 0x0000000000462000 C:\Users\OpenSPIM\Downloads\mFiji (1)\mFiji\ImageJ-win64.exe
0x0000000077610000 - 0x00000000777b9000 C:\Windows\SYSTEM32\ntdll.dll
0x00000000774f0000 - 0x000000007760f000 C:\Windows\system32\kernel32.dll
0x000007fefdb20000 - 0x000007fefdb8c000 C:\Windows\system32\KERNELBASE.dll
0x000007feff4c0000 - 0x000007feff59b000 C:\Windows\system32\ADVAPI32.dll
0x000007feff110000 - 0x000007feff1af000 C:\Windows\system32\msvcrt.dll
0x000007feff900000 - 0x000007feff91f000 C:\Windows\SYSTEM32\sechost.dll
0x000007fefefe0000 - 0x000007feff10d000 C:\Windows\system32\RPCRT4.dll
0x0000000076f30000 - 0x000000007702a000 C:\Windows\system32\USER32.dll
0x000007feff5b0000 - 0x000007feff617000 C:\Windows\system32\GDI32.dll
0x000007feff5a0000 - 0x000007feff5ae000 C:\Windows\system32\LPK.dll
0x000007fefe180000 - 0x000007fefe249000 C:\Windows\system32\USP10.dll
0x000007feff250000 - 0x000007feff27e000 C:\Windows\system32\IMM32.DLL
0x000007fefdf50000 - 0x000007fefe059000 C:\Windows\system32\MSCTF.dll
0x000000006d6c0000 - 0x000000006d6ea000 C:\Users\OpenSPIM\DOWNLO~1\MFIJI(~1\mFiji\jre\bin\splashscreen.dll
0x000007fefc060000 - 0x000007fefc0b6000 C:\Windows\system32\uxtheme.dll
0x000000006d800000 - 0x000000006dfb8000 C:\Users\OpenSPIM\DOWNLO~1\MFIJI(~1\mFiji\jre\bin\server\jvm.dll
0x000007fefb7e0000 - 0x000007fefb81b000 C:\Windows\system32\WINMM.dll
0x000000006d770000 - 0x000000006d77e000 C:\Users\OpenSPIM\DOWNLO~1\MFIJI(~1\mFiji\jre\bin\verify.dll
0x000000006d3b0000 - 0x000000006d3d7000 C:\Users\OpenSPIM\DOWNLO~1\MFIJI(~1\mFiji\jre\bin\java.dll
0x000007fef3ac0000 - 0x000007fef3b08000 C:\Program Files (x86)\TeamViewer\Version9\tv_x64.dll
0x000007fefca10000 - 0x000007fefca1c000 C:\Windows\system32\VERSION.dll
0x000007fefa740000 - 0x000007fefa7e0000 C:\Windows\WinSxS\amd64_microsoft.windows.common-controls_6595b64144ccf1df_5.82.7601.17514_none_a4d6a923711520a9\COMCTL32.dll
0x000007fefe250000 - 0x000007fefefd8000 C:\Windows\system32\SHELL32.dll
0x000007feff620000 - 0x000007feff691000 C:\Windows\system32\SHLWAPI.dll
0x000007feff6f0000 - 0x000007feff8f3000 C:\Windows\system32\ole32.dll
0x000000006d7c0000 - 0x000000006d7d2000 C:\Users\OpenSPIM\DOWNLO~1\MFIJI(~1\mFiji\jre\bin\zip.dll
0x000007fefd9a0000 - 0x000007fefd9af000 C:\Windows\system32\CRYPTBASE.dll
0x000000006d000000 - 0x000000006d1c4000 C:\Users\OpenSPIM\Downloads\mFiji (1)\mFiji\jre\bin\awt.dll
0x000007fefab40000 - 0x000007fefabb1000 C:\Windows\system32\WINSPOOL.DRV
0x000007fefbb70000 - 0x000007fefbb88000 C:\Windows\system32\DWMAPI.DLL
0x000000006d2a0000 - 0x000000006d307000 C:\Users\OpenSPIM\Downloads\mFiji (1)\mFiji\jre\bin\fontmanager.dll
0x000000006d610000 - 0x000000006d627000 C:\Users\OpenSPIM\Downloads\mFiji (1)\mFiji\jre\bin\net.dll
0x000007feff6a0000 - 0x000007feff6ed000 C:\Windows\system32\WS2_32.dll
0x000007fefde40000 - 0x000007fefde48000 C:\Windows\system32\NSI.dll
0x000007fefd1f0000 - 0x000007fefd245000 C:\Windows\system32\mswsock.dll
0x000007fefd2a0000 - 0x000007fefd2a7000 C:\Windows\System32\wship6.dll
0x000000006d630000 - 0x000000006d63b000 C:\Users\OpenSPIM\Downloads\mFiji (1)\mFiji\jre\bin\nio.dll
0x000007fefde70000 - 0x000007fefdf47000 C:\Windows\system32\OLEAUT32.DLL
0x000000006d210000 - 0x000000006d238000 C:\Users\OpenSPIM\Downloads\mFiji (1)\mFiji\jre\bin\dcpr.dll
0x000007fefb4c0000 - 0x000007fefb4e7000 C:\Windows\system32\iphlpapi.dll
0x000007fefb4b0000 - 0x000007fefb4bb000 C:\Windows\system32\WINNSI.DLL
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0x000007fefb120000 - 0x000007fefb138000 C:\Windows\system32\dhcpcsvc.DLL
0x000007fefcae0000 - 0x000007fefcae7000 C:\Windows\System32\wshtcpip.dll
0x000007fefd080000 - 0x000007fefd0db000 C:\Windows\system32\DNSAPI.dll
0x000007fef98a0000 - 0x000007fef98ce000 C:\Program Files\Common Files\Microsoft Shared\Windows Live\WLIDNSP.DLL
0x00000000777d0000 - 0x00000000777d7000 C:\Windows\system32\PSAPI.DLL
0x00000000718d0000 - 0x00000000718f6000 C:\Program Files\Bonjour\mdnsNSP.dll
0x000007fef9890000 - 0x000007fef9898000 C:\Windows\system32\rasadhlp.dll
0x000007fefb3b0000 - 0x000007fefb403000 C:\Windows\System32\fwpuclnt.dll
0x000007feea530000 - 0x000007feea641000 C:\Users\OpenSPIM\Downloads\mFiji (1)\mFiji\MMCoreJ_wrap.dll
0x0000000065760000 - 0x00000000657f8000 C:\Users\OpenSPIM\Downloads\mFiji (1)\mFiji\MSVCP100.dll
0x0000000065680000 - 0x0000000065751000 C:\Users\OpenSPIM\Downloads\mFiji (1)\mFiji\MSVCR100.dll
0x000000006d550000 - 0x000000006d55a000 C:\Users\OpenSPIM\Downloads\mFiji (1)\mFiji\jre\bin\management.dll
0x000007fefba80000 - 0x000007fefba95000 C:\Windows\system32\NLAapi.dll
0x000007fef8500000 - 0x000007fef8515000 C:\Windows\system32\napinsp.dll
0x000007fef83a0000 - 0x000007fef83b9000 C:\Windows\system32\pnrpnsp.dll
0x000007fef8390000 - 0x000007fef839b000 C:\Windows\System32\winrnr.dll
0x000007fefd4f0000 - 0x000007fefd507000 C:\Windows\system32\CRYPTSP.dll
0x000007fefcfd0000 - 0x000007fefd017000 C:\Windows\system32\rsaenh.dll
0x000007fefcf60000 - 0x000007fefcf7e000 C:\Windows\system32\USERENV.dll
0x000007fefda70000 - 0x000007fefda7f000 C:\Windows\system32\profapi.dll
0x000007fefbb50000 - 0x000007fefbb6b000 C:\Users\OpenSPIM\Downloads\mFiji (1)\mFiji\mmgr_dal_PicardStage.dll
0x000007fefb160000 - 0x000007fefb1a7000 C:\Users\OpenSPIM\Downloads\mFiji (1)\mFiji\PiUsb.dll
0x000007feff280000 - 0x000007feff457000 C:\Windows\system32\SETUPAPI.dll
0x000007fefdd20000 - 0x000007fefdd56000 C:\Windows\system32\CFGMGR32.dll
0x000007fefdb90000 - 0x000007fefdbaa000 C:\Windows\system32\DEVOBJ.dll
0x000007fefc050000 - 0x000007fefc05b000 C:\Windows\system32\HID.DLL
0x000007fefdd60000 - 0x000007fefdd9a000 C:\Windows\system32\WINTRUST.dll
0x000007fefdbb0000 - 0x000007fefdd17000 C:\Windows\system32\CRYPT32.dll
0x000007fefdb10000 - 0x000007fefdb1f000 C:\Windows\system32\MSASN1.dll
0x000007fefb140000 - 0x000007fefb157000 C:\Users\OpenSPIM\Downloads\mFiji (1)\mFiji\mmgr_dal_AAAOTF.dll
0x000007fef9420000 - 0x000007fef945e000 C:\Users\OpenSPIM\Downloads\mFiji (1)\mFiji\mmgr_dal_ABSCamera.dll
0x000007fef9f60000 - 0x000007fef9f7c000 C:\Users\OpenSPIM\Downloads\mFiji (1)\mFiji\mmgr_dal_AgilentLaserCombiner.dll
0x000007fef9400000 - 0x000007fef9417000 C:\Users\OpenSPIM\Downloads\mFiji (1)\mFiji\mmgr_dal_Aladdin.dll
0x000007fef4950000 - 0x000007fef498a000 C:\Users\OpenSPIM\Downloads\mFiji (1)\mFiji\mmgr_dal_Andor.dll
0x000007feea260000 - 0x000007feea370000 C:\Users\OpenSPIM\Downloads\mFiji (1)\mFiji\atmcd64d.dll
0x000007fef9190000 - 0x000007fef91a4000 C:\Users\OpenSPIM\Downloads\mFiji (1)\mFiji\atcore.dll
0x000007fef93a0000 - 0x000007fef93b1000 C:\Users\OpenSPIM\Downloads\mFiji (1)\mFiji\atspooler.dll
0x000007fefbb00000 - 0x000007fefbb0a000 C:\Users\OpenSPIM\Downloads\mFiji (1)\mFiji\atutility.dll
0x000007fefaf60000 - 0x000007fefaf68000 C:\Users\OpenSPIM\Downloads\mFiji (1)\mFiji\atblkbx.dll
0x000007fef4920000 - 0x000007fef4945000 C:\Users\OpenSPIM\Downloads\mFiji (1)\mFiji\mmgr_dal_AndorLaserCombiner.dll
0x000007feea4b0000 - 0x000007feea524000 C:\Users\OpenSPIM\Downloads\mFiji (1)\mFiji\mmgr_dal_AndorSDK3.dll
0x000007fef8200000 - 0x000007fef8218000 C:\Users\OpenSPIM\Downloads\mFiji (1)\mFiji\mmgr_dal_AOTF.dll
0x000000000c9c0000 - 0x000000000c9d3000 C:\Users\OpenSPIM\Downloads\mFiji (1)\mFiji\inpoutx64.dll
0x000007fef7960000 - 0x000007fef7976000 C:\Users\OpenSPIM\Downloads\mFiji (1)\mFiji\mmgr_dal_Aquinas.dll
0x000007feec8b0000 - 0x000007feec8d4000 C:\Users\OpenSPIM\Downloads\mFiji (1)\mFiji\mmgr_dal_Arduino.dll
0x000007fef7940000 - 0x000007fef795d000 C:\Users\OpenSPIM\Downloads\mFiji (1)\mFiji\mmgr_dal_ASIFW1000.dll
0x000007feec870000 - 0x000007feec8af000 C:\Users\OpenSPIM\Downloads\mFiji (1)\mFiji\mmgr_dal_ASIStage.dll
0x000007feea0a0000 - 0x000007feea14a000 C:\Users\OpenSPIM\Downloads\mFiji (1)\mFiji\mmgr_dal_ASITiger.dll
0x000007fef4900000 - 0x000007fef4915000 C:\Users\OpenSPIM\Downloads\mFiji (1)\mFiji\mmgr_dal_ASIwptr.dll
0x000007feec840000 - 0x000007feec865000 C:\Users\OpenSPIM\Downloads\mFiji (1)\mFiji\mmgr_dal_AxioCam.dll
0x000007feec810000 - 0x000007feec83c000 C:\Users\OpenSPIM\Downloads\mFiji (1)\mFiji\mmgr_dal_BaumerOptronic.dll
0x000007fee9e50000 - 0x000007feea092000 C:\Users\OpenSPIM\Downloads\mFiji (1)\mFiji\FxLib.dll
0x000007feea480000 - 0x000007feea4a7000 C:\Users\OpenSPIM\Downloads\mFiji (1)\mFiji\SysInfo.dll
0x000007fefd250000 - 0x000007fefd259000 C:\Windows\system32\WSOCK32.dll
0x000007feea450000 - 0x000007feea478000 C:\Users\OpenSPIM\Downloads\mFiji (1)\mFiji\mmgr_dal_CARVII.dll
0x000007fef3b50000 - 0x000007fef3b6a000 C:\Users\OpenSPIM\Downloads\mFiji (1)\mFiji\mmgr_dal_Cobolt.dll
0x000007fee9e30000 - 0x000007fee9e4a000 C:\Users\OpenSPIM\Downloads\mFiji (1)\mFiji\mmgr_dal_CoherentCube.dll
0x000007fee9e10000 - 0x000007fee9e28000 C:\Users\OpenSPIM\Downloads\mFiji (1)\mFiji\mmgr_dal_CoherentOBIS.dll
0x000007fee9de0000 - 0x000007fee9e05000 C:\Users\OpenSPIM\Downloads\mFiji (1)\mFiji\mmgr_dal_Conix.dll
0x000007fee9dc0000 - 0x000007fee9ddd000 C:\Users\OpenSPIM\Downloads\mFiji (1)\mFiji\mmgr_dal_Corvus.dll
0x000007fee9d90000 - 0x000007fee9dbd000 C:\Users\OpenSPIM\Downloads\mFiji (1)\mFiji\mmgr_dal_CSUW1.dll
0x000007fee9d50000 - 0x000007fee9d87000 C:\Users\OpenSPIM\Downloads\mFiji (1)\mFiji\mmgr_dal_CSUX.dll
0x000007fee9c70000 - 0x000007fee9d49000 C:\Users\OpenSPIM\Downloads\mFiji (1)\mFiji\mmgr_dal_DECamera.dll
0x000007fee9c30000 - 0x000007fee9c6f000 C:\Users\OpenSPIM\Downloads\mFiji (1)\mFiji\mmgr_dal_DemoCamera.dll
0x000007fee9c00000 - 0x000007fee9c28000 C:\Users\OpenSPIM\Downloads\mFiji (1)\mFiji\mmgr_dal_ESIOImagingControllers.dll
0x000007fee9bc0000 - 0x000007fee9bf5000 C:\Users\OpenSPIM\Downloads\mFiji (1)\mFiji\mmgr_dal_FLICamera.dll
0x000007fee9ba0000 - 0x000007fee9bb9000 C:\Users\OpenSPIM\Downloads\mFiji (1)\mFiji\mmgr_dal_FreeSerialPort.dll
0x000007fee9b80000 - 0x000007fee9b9b000 C:\Users\OpenSPIM\Downloads\mFiji (1)\mFiji\mmgr_dal_GenericSLM.dll
0x000007fee9b60000 - 0x000007fee9b78000 C:\Users\OpenSPIM\Downloads\mFiji (1)\mFiji\mmgr_dal_HIDManager.dll
0x000007fefacc0000 - 0x000007fefacc8000 C:\Users\OpenSPIM\Downloads\mFiji (1)\mFiji\hidapi.dll
0x000007fee9b40000 - 0x000007fee9b56000 C:\Users\OpenSPIM\Downloads\mFiji (1)\mFiji\mmgr_dal_ImageProcessorChain.dll
0x000007fee9b20000 - 0x000007fee9b3f000 C:\Users\OpenSPIM\Downloads\mFiji (1)\mFiji\mmgr_dal_K8055.dll
0x000007fee9b00000 - 0x000007fee9b1f000 C:\Users\OpenSPIM\Downloads\mFiji (1)\mFiji\mmgr_dal_K8061.dll
0x000007fee9ae0000 - 0x000007fee9af8000 C:\Users\OpenSPIM\Downloads\mFiji (1)\mFiji\mmgr_dal_KDV.dll
0x000007fee9a80000 - 0x000007fee9ad5000 C:\Users\OpenSPIM\Downloads\mFiji (1)\mFiji\mmgr_dal_LeicaDMI.dll
0x000007fee9a50000 - 0x000007fee9a75000 C:\Users\OpenSPIM\Downloads\mFiji (1)\mFiji\mmgr_dal_LeicaDMR.dll
0x000007fee9a30000 - 0x000007fee9a4a000 C:\Users\OpenSPIM\Downloads\mFiji (1)\mFiji\mmgr_dal_LeicaDMSTC.dll
0x000007fee9a00000 - 0x000007fee9a2b000 C:\Users\OpenSPIM\Downloads\mFiji (1)\mFiji\mmgr_dal_Ludl.dll
0x000007fee99e0000 - 0x000007fee99fc000 C:\Users\OpenSPIM\Downloads\mFiji (1)\mFiji\mmgr_dal_LudlLow.dll
0x000007fee99b0000 - 0x000007fee99d4000 C:\Users\OpenSPIM\Downloads\mFiji (1)\mFiji\mmgr_dal_LumencorCIA.dll
0x000007fee9990000 - 0x000007fee99a6000 C:\Users\OpenSPIM\Downloads\mFiji (1)\mFiji\mmgr_dal_LumencorSpectra.dll
0x000007fee9970000 - 0x000007fee9986000 C:\Users\OpenSPIM\Downloads\mFiji (1)\mFiji\mmgr_dal_MaestroServo.dll
0x000007fee9930000 - 0x000007fee9969000 C:\Users\OpenSPIM\Downloads\mFiji (1)\mFiji\mmgr_dal_Marzhauser.dll
0x000007fee9900000 - 0x000007fee9925000 C:\Users\OpenSPIM\Downloads\mFiji (1)\mFiji\mmgr_dal_MarzhauserLStep.dll
0x000007fee9850000 - 0x000007fee98f3000 C:\Users\OpenSPIM\Downloads\mFiji (1)\mFiji\mmgr_dal_MCL_MicroDrive.dll
VM Arguments:
jvm_args: -Xmx2000m -XX:MaxDirectMemorySize=1000g -Dpython.cachedir.skip=true -Dplugins.dir=C:\Users\OpenSPIM\DOWNLO~1\MFIJI(~1\mFiji -Xincgc -XX:PermSize=128m
java_command: <unknown>
Launcher Type: generic
Environment Variables:
JAVA_HOME=C:\Users\OpenSPIM\DOWNLO~1\MFIJI(~1\mFiji/.\jre
PATH=C:\ProgramData\Oracle\Java\javapath;C:\PROGRA~2\Borland\Delphi5\Projects\Bpl;C:\PROGRA~2\Borland\Delphi5\Bin;C:\Program Files\Common Files\Microsoft Shared\Windows Live;C:\Program Files (x86)\Common Files\Microsoft Shared\Windows Live;C:\Windows\system32;C:\Windows;C:\Windows\System32\Wbem;C:\Windows\System32\WindowsPowerShell\v1.0\;C:\Program Files (x86)\NTRU Cryptosystems\NTRU TCG Software Stack\bin\;C:\Program Files\NTRU Cryptosystems\NTRU TCG Software Stack\bin\;C:\Program Files\Wave Systems Corp\Gemalto\Access Client\v5\;C:\Program Files (x86)\Windows Live\Shared;C:\Program Files (x86)\Common Files\Roxio Shared\DLLShared\;C:\Program Files (x86)\Common Files\Roxio Shared\OEM\DLLShared\;C:\Program Files (x86)\Common Files\Roxio Shared\OEM\DLLShared\;C:\Program Files (x86)\Common Files\Roxio Shared\OEM\12.0\DLLShared\;C:\Program Files (x86)\Roxio\OEM\AudioCore\;\Serial;\Serial;C:\Program Files (x86)\Windows Kits\8.1\Windows Performance Toolkit\;C:\Program Files\Microsoft Windows Performance Toolkit\;C:\Program Files (x86)\Microsoft SQL Server\100\Tools\Binn\;C:\Program Files\Microsoft SQL Server\100\Tools\Binn\;C:\Program Files\Microsoft SQL Server\100\DTS\Binn\;C:\Program Files\Apache Software Foundation\apache-maven-3.2.3\bin;C:\Program Files\Java\jdk1.6.0\bin;C:\Program Files (x86)\Git\cmd;C:\Users\OpenSPIM\DOWNLO~1\MFIJI(~1\mFiji/lib/win64;C:\Users\OpenSPIM\DOWNLO~1\MFIJI(~1\mFiji/mm/win64;C:\Users\OpenSPIM\DOWNLO~1\MFIJI(~1\mFiji/.\jre/bin
USERNAME=OpenSPIM
OS=Windows_NT
PROCESSOR_IDENTIFIER=Intel64 Family 6 Model 44 Stepping 2, GenuineIntel
--------------- S Y S T E M ---------------
OS: Windows 7 , 64 bit Build 7601 Service Pack 1
CPU:total 6 (6 cores per cpu, 2 threads per core) family 6 model 44 stepping 2, cmov, cx8, fxsr, mmx, sse, sse2, sse3, ssse3, sse4.1, sse4.2, popcnt, ht
Memory: 4k page, physical 25163352k(22438988k free), swap 50324856k(46985820k free)
vm_info: Java HotSpot(TM) 64-Bit Server VM (20.6-b01) for windows-amd64 JRE (1.6.0_31-b05), built on Feb 3 2012 18:34:57 by "java_re" with MS VC++ 8.0 (VS2005)
time: Tue Jan 20 19:01:52 2015
elapsed time: 30 seconds
Any thoughts?
Kind regards,
Gabriel Davis Jones
Florey Institute for Neuroscience and Mental Health
Laboratory for Ion Channels and Human Diseases
Level 1 Kenneth Myer Building
Genetics Lane on Royal Parade
The University of Melbourne Vic 3010
Phone: +61 3 9035 3633<tel://Phone:%A0%20+61%203%209035%203633>
Email: gabriel.jones at florey.edu.au<mailto:gabriel.jones at florey.edu.au>
Mobile: 0449 703 373<tel://Mobile:%200449%20703%20373>
________________________________
From: Ulrik Günther [guenther at mpi-cbg.de]
Sent: 16 January 2015 22:23
To: Gabriel Davis Jones
Cc: openspim at openspim.org
Subject: Re: [OpenSPIM] Best practices for using a different camera?
Hello Gabriel,
we are also using Andor Neo cameras and they work pretty great.
Currently, we are refactoring the OpenSPIM plugin, so it can be used with a normal installation of Fiji and MicroManager, so our special package is not needed anymore. I have a recent nightly build available, based on MicroManager 1.4.18, which you can find at https://idisk-srv1.mpi-cbg.de/~gunther/OpenSPIM/mFiji.zip The corresponding OpenSPIM plugin is available at https://idisk-srv1.mpi-cbg.de/~gunther/OpenSPIM/SPIMacquisition.jar and has to be put into the mmplugins/ directory. This version also works on 64bit machines.
With this version, you can just create your setup as usual, just select the Andor SDK3 as camera.
Please let me know if that worked for you :-)
cheers,
ulrik
-
Ulrik Günther, Dipl.-Phys.
PhD Student
MOSAIC Group & Tomancak Lab, Center of Systems Biology Dresden
Max Planck Institute of Molecular Cell Biology and Genetics
Pfotenhauerstr. 108, D-01307 Dresden, Germany
E-Mail: guenther at mpi-cbg.de
On Jan 15, 2015, at 3:10 PM, Gabriel Davis Jones <gabriel.jones at florey.edu.au> wrote:
Hi All,
We are currently trying to use an Andor Neo camera in our OpenSPIM setup instead of the described Hamamatsu.
Is there some "best practices" advice anyone could give regarding how to go about using a different camera in the setup (preferably the Andor Neo) and how to get the FIJI/OpenSPIM package to cooperate with the camera?
Thank you,
Gabriel Davis Jones
Florey Institute for Neuroscience and Mental Health
Laboratory for Ion Channels and Human Diseases
Level 1 Kenneth Myer Building
Genetics Lane on Royal Parade
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