[OpenSPIM] Fwd: A new question about our Light Sheet
Luke Stuyvenberg
stuyvenberg at wisc.edu
Wed Jan 7 02:03:40 CST 2015
Hi Christian,
On 1/6/2015 4:56 AM, Cristian Undurraga wrote:
> Hi Luke,
>
> I´m Cristian Undurraga from Chile, we were talking about our OpenSpim Light Sheet at beginning of the last year.
>
> Some weeks ago (20th Dic) we updated the software but after this we presented problems with the software. The Fiji program didn´t work properly, neither the uManager. We try the update again (22th Dic), Fiji open correctly but now the uManager plugin don`t recognize the devices (Laser, camera and stage control).
>
> We also downloaded again the Fiji package with the last version of OpenSpim but didn`t bring the "stage control" plugin to our Light Sheet .
>
> If you could help us, or other person in OpenSpim who can help us, we would be grateful.
> I send the CoreLog from those days:
I'm afraid I'm no longer active in the development of the OpenSPIM
platform; I've had to move across the United States for graduate school,
and I have a very difficult time working remotely while enrolled in
graduate-level classes. I've forwarded this e-mail onto the OpenSPIM
mailing list (openspim at openspim.org), where it should reach people much
more familiar with the current state of the project than I am. (I
suggest CCing that list in the future as well; they'll be able to
provide more up-to-date help more quickly than I can.)
That said, here's the problems I see, based on your most recent core log:
- The camera (OrcaFlash) is failing to initialize (line 227): "Error
code 40 (28 hex)." (Sadly I've no idea what precisely that error code
means. It may be the memory bug rearing its head again, so perhaps
limiting Fiji's memory will solve this.)
- The laser (Cobolt) is having an error when the program asks whether or
not it's turned on (line 339). This leads to a number of errors, since
the laser is in an invalid state -- for instance on lines 415 and, when
OpenSPIM is loading, 819. (This second error I've seen before, but I
don't recall the fix -- I believed it was a bug in the Cobolt device
adapter at the time.)
As usual, please make sure your Fiji and OpenSPIM are completely
up-to-date by running the Fiji updater. (I usually run it, restart Fiji,
then repeat until the updater says Fiji is up-to-date.)
My best suggestion for an immediate fix would be to re-make your
configuration file according to the process on our wiki. (It may help to
select 'none' as the configuration file when Micro-Manager is opening.)
It's possible that device adapter names or their property names have
changed, so doing this might create a working configuration file.
However, as I understand it, some significant development has been
happening on OpenSPIM recently to improve its relationship to
Micro-Manager (which will probably lead to 64-bit OpenSPIM, among other
benefits!). Not all the changes may be in the updater; it's also
possible the installation process has changed entirely. Hopefully the
mailing list can offer some advice on this point.
Hope this helps,
Luke Stuyvenberg
-------------- next part --------------
2014-12-22T19:59:07.972769 tid5204 [IFO,LogManager] Enabled primary log file C:\Users\User\Desktop\OpenSPIM.app\CoreLogs\CoreLog20141222T195907_pid6848.txt
2014-12-22T19:59:07.972769 tid5204 [IFO,LogManager] Switching primary log level from info to trace
2014-12-22T19:59:07.988370 tid5204 [IFO,LogManager] Switched primary log level from info to trace
2014-12-22T19:59:07.988370 tid5204 [IFO,App] User: User
2014-12-22T19:59:07.988370 tid5204 [IFO,App] Host: OpenSPIM01
2014-12-22T19:59:07.988370 tid5204 [IFO,App] MM Studio version: 1.4.x dev
2014-12-22T19:59:07.988370 tid5204 [IFO,App] MMCore version 4.0.4
2014-12-22T19:59:07.988370 tid5204 [IFO,App] Device API version 60, Module API version 10
2014-12-22T19:59:07.988370 tid5204 [IFO,App] Operating System: Windows 7 (x86) 6.1
2014-12-22T19:59:07.988370 tid5204 [IFO,App] JVM: Java HotSpot(TM) Client VM, version 1.6.0_24, 32-bit
2014-12-22T19:59:07.988370 tid5204 [dbg,Core] Will set circular buffer size to 25 MB
2014-12-22T19:59:07.988370 tid5204 [dbg,Core] Did set circular buffer size to 25 MB
2014-12-22T19:59:08.128770 tid5084 [IFO,App] Attempting to install plugin spim.SPIMAcquisition
2014-12-22T19:59:08.144370 tid5084 [IFO,App] Attempting to install autofocus plugin Autofocus
2014-12-22T19:59:08.144370 tid5084 [IFO,App] Attempting to install autofocus plugin AutofocusDuo
2014-12-22T19:59:08.144370 tid5084 [IFO,App] Attempting to install autofocus plugin AutofocusTB
2014-12-22T19:59:08.144370 tid5084 [IFO,App] Attempting to install autofocus plugin OughtaFocus
2014-12-22T19:59:09.907173 tid5204 [dbg,Core] Will set property: Core-Initialize = 0
2014-12-22T19:59:09.907173 tid5204 [dbg,Core] Will unload all devices
2014-12-22T19:59:09.907173 tid5204 [IFO,Core] Did unload all devices
2014-12-22T19:59:09.907173 tid5204 [dbg,App] Notification for Device: Core Property: Initialize changed to value: 0
2014-12-22T19:59:09.907173 tid5204 [dbg,Core] Did set property: Core-Initialize = 0
2014-12-22T19:59:09.907173 tid5204 [dbg,Core] Will load device COM3 from SerialManager
2014-12-22T19:59:09.907173 tid5204 [IFO,Core] Did load device COM3 from SerialManager; label = COM3
2014-12-22T19:59:09.907173 tid5204 [dbg,Core] Will load device Cobolt from Cobolt
2014-12-22T19:59:09.907173 tid5204 [IFO,Core] Did load device Cobolt from Cobolt; label = Cobolt
2014-12-22T19:59:09.907173 tid5204 [dbg,Core] Will load device HamamatsuHam_DCAM from HamamatsuHam
2014-12-22T19:59:09.922773 tid5204 [IFO,Core] Did load device HamamatsuHam_DCAM from HamamatsuHam; label = OrcaFlash
2014-12-22T19:59:09.922773 tid5204 [dbg,Core] Will load device Picard Twister from PicardStage
2014-12-22T19:59:09.922773 tid5204 [IFO,Core] Did load device Picard Twister from PicardStage; label = Picard Twister
2014-12-22T19:59:09.922773 tid5204 [dbg,Core] Will load device Picard Z Stage from PicardStage
2014-12-22T19:59:09.922773 tid5204 [IFO,Core] Did load device Picard Z Stage from PicardStage; label = Picard Z Stage
2014-12-22T19:59:09.922773 tid5204 [dbg,Core] Will load device Picard XY Stage from PicardStage
2014-12-22T19:59:09.922773 tid5204 [IFO,Core] Did load device Picard XY Stage from PicardStage; label = Picard XY Stage
2014-12-22T19:59:09.922773 tid5204 [dbg,Core] Will set property: Cobolt-Max Power = 60.0000
2014-12-22T19:59:09.922773 tid5204 [dbg,Core] Did set property: Cobolt-Max Power = 60.0000
2014-12-22T19:59:09.922773 tid5204 [dbg,Core] Will set property: Cobolt-Port = COM3
2014-12-22T19:59:09.922773 tid5204 [dbg,Core] Did set property: Cobolt-Port = COM3
2014-12-22T19:59:09.922773 tid5204 [dbg,Core] Will set property: Picard Twister-Serial Number = 37
2014-12-22T19:59:09.938373 tid5204 [dbg,Core] Did set property: Picard Twister-Serial Number = 37
2014-12-22T19:59:09.938373 tid5204 [dbg,Core] Will set property: Picard Z Stage-Serial Number = 140
2014-12-22T19:59:09.953973 tid5204 [dbg,Core] Did set property: Picard Z Stage-Serial Number = 140
2014-12-22T19:59:09.953973 tid5204 [dbg,Core] Will set property: Picard XY Stage-Serial Number (X) = 139
2014-12-22T19:59:09.969573 tid5204 [dbg,Core] Did set property: Picard XY Stage-Serial Number (X) = 139
2014-12-22T19:59:09.969573 tid5204 [dbg,Core] Will set property: Picard XY Stage-Serial Number (Y) = 141
2014-12-22T19:59:10.031973 tid5204 [dbg,Core] Did set property: Picard XY Stage-Serial Number (Y) = 141
2014-12-22T19:59:10.031973 tid5204 [dbg,Core] Will set property: Picard XY Stage-X-Max = 8000
2014-12-22T19:59:10.031973 tid5204 [dbg,Core] Did set property: Picard XY Stage-X-Max = 8000
2014-12-22T19:59:10.031973 tid5204 [dbg,Core] Will set property: Picard XY Stage-X-Min = 1
2014-12-22T19:59:10.031973 tid5204 [dbg,Core] Did set property: Picard XY Stage-X-Min = 1
2014-12-22T19:59:10.031973 tid5204 [dbg,Core] Will set property: Picard XY Stage-Y-Max = 8000
2014-12-22T19:59:10.031973 tid5204 [dbg,Core] Did set property: Picard XY Stage-Y-Max = 8000
2014-12-22T19:59:10.031973 tid5204 [dbg,Core] Will set property: Picard XY Stage-Y-Min = 1
2014-12-22T19:59:10.031973 tid5204 [dbg,Core] Did set property: Picard XY Stage-Y-Min = 1
2014-12-22T19:59:10.031973 tid5204 [dbg,Core] Will set property: COM3-AnswerTimeout = 500.0000
2014-12-22T19:59:10.031973 tid5204 [dbg,Core] Did set property: COM3-AnswerTimeout = 500.0000
2014-12-22T19:59:10.031973 tid5204 [dbg,Core] Will set property: COM3-BaudRate = 115200
2014-12-22T19:59:10.031973 tid5204 [dbg,Core] Did set property: COM3-BaudRate = 115200
2014-12-22T19:59:10.031973 tid5204 [dbg,Core] Will set property: COM3-DelayBetweenCharsMs = 0.0000
2014-12-22T19:59:10.031973 tid5204 [dbg,Core] Did set property: COM3-DelayBetweenCharsMs = 0.0000
2014-12-22T19:59:10.031973 tid5204 [dbg,Core] Will set property: COM3-Handshaking = Off
2014-12-22T19:59:10.031973 tid5204 [dbg,Core] Did set property: COM3-Handshaking = Off
2014-12-22T19:59:10.031973 tid5204 [dbg,Core] Will set property: COM3-Parity = None
2014-12-22T19:59:10.031973 tid5204 [dbg,Core] Did set property: COM3-Parity = None
2014-12-22T19:59:10.031973 tid5204 [dbg,Core] Will set property: COM3-StopBits = 1
2014-12-22T19:59:10.031973 tid5204 [dbg,Core] Did set property: COM3-StopBits = 1
2014-12-22T19:59:10.031973 tid5204 [dbg,Core] Will set property: COM3-Verbose = 1
2014-12-22T19:59:10.031973 tid5204 [dbg,Core] Did set property: COM3-Verbose = 1
2014-12-22T19:59:10.031973 tid5204 [dbg,Core] Will set property: Core-Initialize = 1
2014-12-22T19:59:10.031973 tid5204 [IFO,Core] Will initialize 6 devices
2014-12-22T19:59:10.031973 tid5204 [IFO,Core] Will initialize device COM3
2014-12-22T19:59:10.031973 tid5204 [dbg,dev:COM3] Attempting to set baud of COM3 to 115200
2014-12-22T19:59:10.047573 tid5204 [dbg,dev:COM3] Attempting to set flow of COM3 to none
2014-12-22T19:59:10.047573 tid5204 [dbg,dev:COM3] Attempting to set parity of COM3 to none
2014-12-22T19:59:10.063173 tid5204 [dbg,dev:COM3] Attempting to set stopBits of COM3 to 1
2014-12-22T19:59:10.078773 tid5204 [IFO,Core] Did initialize device COM3
2014-12-22T19:59:10.078773 tid5204 [IFO,Core] Will initialize device Cobolt
2014-12-22T19:59:10.078773 tid5204 [dbg,dev:COM3] SetCommand -> i? \r
2014-12-22T19:59:10.125573 tid5204 [dbg,dev:COM3] GetAnswer # retries = 4
2014-12-22T19:59:10.125573 tid5204 [dbg,dev:COM3] GetAnswer <- 0.0\r
2014-12-22T19:59:10.125573 tid5204 [dbg,dev:COM3] SetCommand -> f? \r
2014-12-22T19:59:10.187973 tid5204 [dbg,dev:COM3] GetAnswer # retries = 5
2014-12-22T19:59:10.187973 tid5204 [dbg,dev:COM3] GetAnswer <- \n0\r
2014-12-22T19:59:10.187973 tid5204 [dbg,dev:COM3] SetCommand -> hrs? \r
2014-12-22T19:59:10.234773 tid5204 [dbg,dev:COM3] GetAnswer # retries = 4
2014-12-22T19:59:10.234773 tid5204 [dbg,dev:COM3] GetAnswer <- \n114.13\r
2014-12-22T19:59:10.234773 tid5204 [dbg,dev:COM3] SetCommand -> ilk? \r
2014-12-22T19:59:10.281574 tid5204 [dbg,dev:COM3] GetAnswer # retries = 4
2014-12-22T19:59:10.281574 tid5204 [dbg,dev:COM3] GetAnswer <- \n0\r
2014-12-22T19:59:10.281574 tid5204 [dbg,dev:COM3] SetCommand -> l? \r
2014-12-22T19:59:10.328374 tid5204 [dbg,dev:COM3] GetAnswer # retries = 4
2014-12-22T19:59:10.328374 tid5204 [dbg,dev:COM3] GetAnswer <- \n0\r
2014-12-22T19:59:10.328374 tid5204 [dbg,dev:COM3] SetCommand -> l? \r
2014-12-22T19:59:10.375174 tid5204 [dbg,dev:COM3] GetAnswer # retries = 4
2014-12-22T19:59:10.375174 tid5204 [dbg,dev:COM3] GetAnswer <- \n0\r
2014-12-22T19:59:10.375174 tid5204 [dbg,dev:COM3] SetCommand -> pa? \r
2014-12-22T19:59:10.421974 tid5204 [dbg,dev:COM3] GetAnswer # retries = 4
2014-12-22T19:59:10.421974 tid5204 [dbg,dev:COM3] GetAnswer <- \n-0.0000\r
2014-12-22T19:59:10.421974 tid5204 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-22T19:59:10.468774 tid5204 [dbg,dev:COM3] GetAnswer # retries = 4
2014-12-22T19:59:10.468774 tid5204 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-22T19:59:10.468774 tid5204 [dbg,dev:COM3] SetCommand -> sn? \r
2014-12-22T19:59:10.515574 tid5204 [dbg,dev:COM3] GetAnswer # retries = 4
2014-12-22T19:59:10.515574 tid5204 [dbg,dev:COM3] GetAnswer <- \n488006152\r
2014-12-22T19:59:10.515574 tid5204 [dbg,dev:COM3] SetCommand -> ver? \r
2014-12-22T19:59:10.546774 tid5204 [dbg,dev:COM3] GetAnswer # retries = 3
2014-12-22T19:59:10.546774 tid5204 [dbg,dev:COM3] GetAnswer <- \n6.65\r
2014-12-22T19:59:10.546774 tid5204 [dbg,dev:COM3] SetCommand -> l0\r
2014-12-22T19:59:10.609174 tid5204 [dbg,dev:COM3] GetAnswer # retries = 5
2014-12-22T19:59:10.609174 tid5204 [dbg,dev:COM3] GetAnswer <- \nOK\r
2014-12-22T19:59:10.609174 tid5204 [IFO,Core] Did initialize device Cobolt
2014-12-22T19:59:10.609174 tid5204 [IFO,Core] Default shutter set to Cobolt
2014-12-22T19:59:10.609174 tid5204 [IFO,Core] Will initialize device OrcaFlash
2014-12-22T19:59:11.570427 tid5204 [ERR,Core] Error occurred in device OrcaFlash: Error in device OrcaFlash: Error code 40 (28 hex).
2014-12-22T19:59:11.570427 tid5204 [dbg,Core] Will set property: Core-Camera = OrcaFlash
2014-12-22T19:59:11.570427 tid5204 [dbg,Core] Will set property: Core-Shutter = Cobolt
2014-12-22T19:59:11.570427 tid5204 [dbg,Core] Will set property: Core-Focus = Picard Z Stage
2014-12-22T19:59:11.570427 tid5204 [dbg,Core] Will set property: Core-AutoShutter = 1
2014-12-22T19:59:11.570427 tid5204 [dbg,Core] Autoshutter turned on
2014-12-22T19:59:11.570427 tid5204 [dbg,App] Notification for Device: Core Property: AutoShutter changed to value: 1
2014-12-22T19:59:11.570427 tid5204 [dbg,Core] Did set property: Core-AutoShutter = 1
2014-12-22T19:59:11.572427 tid5204 [IFO,App]
[ ] java.lang.Exception: Line 38: Property,Core,Initialize,1
[ ] Error in device OrcaFlash: Error code 40 (28 hex).
[ ]
[ ] Line 43: Property,Core,Camera,OrcaFlash
[ ] Cannot set Core property Camera to invalid value "OrcaFlash"
[ ]
[ ] Line 44: Property,Core,Shutter,Cobolt
[ ] Cannot set Core property Shutter to invalid value "Cobolt"
[ ]
[ ] Line 45: Property,Core,Focus,Picard Z Stage
[ ] Cannot set Core property Focus to invalid value "Picard Z Stage"
[ ]
[ ] in Thread[AWT-EventQueue-0,6,main]
[ ] at mmcorej.MMCoreJJNI.CMMCore_loadSystemConfiguration(Native Method)
[ ] at mmcorej.CMMCore.loadSystemConfiguration(CMMCore.java:313)
[ ] at org.micromanager.MMStudioMainFrame.loadSystemConfiguration(MMStudioMainFrame.java:3151)
[ ] at org.micromanager.MMStudioMainFrame.access$2200(MMStudioMainFrame.java:157)
[ ] at org.micromanager.MMStudioMainFrame$1.windowOpened(MMStudioMainFrame.java:560)
[ ] at java.awt.AWTEventMulticaster.windowOpened(AWTEventMulticaster.java:322)
[ ] at java.awt.Window.processWindowEvent(Window.java:1862)
[ ] at javax.swing.JFrame.processWindowEvent(JFrame.java:274)
[ ] at java.awt.Window.processEvent(Window.java:1823)
[ ] at java.awt.Component.dispatchEventImpl(Component.java:4652)
[ ] at java.awt.Container.dispatchEventImpl(Container.java:2099)
[ ] at java.awt.Window.dispatchEventImpl(Window.java:2478)
[ ] at java.awt.Component.dispatchEvent(Component.java:4482)
[ ] at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:644)
[ ] at java.awt.EventQueue.access$000(EventQueue.java:85)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:603)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:601)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:617)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:615)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.awt.EventQueue.dispatchEvent(EventQueue.java:614)
[ ] at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269)
[ ] at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184)
[ ] at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161)
[ ] at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
2014-12-22T19:59:13.593543 tid5204 [dbg,dev:COM3] SetCommand -> l? \r
2014-12-22T19:59:13.597543 tid5204 [dbg,dev:COM3] GetAnswer # retries = 5
2014-12-22T19:59:13.597543 tid5204 [dbg,dev:COM3] GetAnswer <- \n0\r
2014-12-22T19:59:13.597543 tid5204 [ERR,Core] Error occurred in device CMMCore::getShutterOpen(): Error in device Cobolt: Invalid state (position) requested.
2014-12-22T19:59:13.597543 tid5204 [IFO,App]
[ ] java.lang.Exception: Error in device Cobolt: Invalid state (position) requested. in Thread[AWT-EventQueue-0,6,main]
[ ] at mmcorej.MMCoreJJNI.CMMCore_getShutterOpen__SWIG_0(Native Method)
[ ] at mmcorej.CMMCore.getShutterOpen(CMMCore.java:885)
[ ] at org.micromanager.MMStudioMainFrame.updateGUI(MMStudioMainFrame.java:2812)
[ ] at org.micromanager.MMStudioMainFrame.updateGUI(MMStudioMainFrame.java:2782)
[ ] at org.micromanager.MMStudioMainFrame.initializeGUI(MMStudioMainFrame.java:2701)
[ ] at org.micromanager.MMStudioMainFrame.loadSystemConfiguration(MMStudioMainFrame.java:3165)
[ ] at org.micromanager.MMStudioMainFrame.access$2200(MMStudioMainFrame.java:157)
[ ] at org.micromanager.MMStudioMainFrame$1.windowOpened(MMStudioMainFrame.java:560)
[ ] at java.awt.AWTEventMulticaster.windowOpened(AWTEventMulticaster.java:322)
[ ] at java.awt.Window.processWindowEvent(Window.java:1862)
[ ] at javax.swing.JFrame.processWindowEvent(JFrame.java:274)
[ ] at java.awt.Window.processEvent(Window.java:1823)
[ ] at java.awt.Component.dispatchEventImpl(Component.java:4652)
[ ] at java.awt.Container.dispatchEventImpl(Container.java:2099)
[ ] at java.awt.Window.dispatchEventImpl(Window.java:2478)
[ ] at java.awt.Component.dispatchEvent(Component.java:4482)
[ ] at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:644)
[ ] at java.awt.EventQueue.access$000(EventQueue.java:85)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:603)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:601)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:617)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:615)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.awt.EventQueue.dispatchEvent(EventQueue.java:614)
[ ] at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269)
[ ] at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184)
[ ] at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161)
[ ] at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
2014-12-22T19:59:13.602544 tid5204 [IFO,App] Startup script file (C:\Users\User\Desktop\OpenSPIM.app\MMStartup.bsh) not present.
2014-12-22T19:59:13.653547 tid5204 [IFO,App]
[ ] java.lang.Exception: Cannot set Core property Shutter to invalid value "Cobolt" in Thread[AWT-EventQueue-0,6,main]
[ ] at mmcorej.MMCoreJJNI.CMMCore_setChannelGroup(Native Method)
[ ] at mmcorej.CMMCore.setChannelGroup(CMMCore.java:665)
[ ] at org.micromanager.acquisition.AcquisitionWrapperEngine.setChannelGroup(AcquisitionWrapperEngine.java:690)
[ ] at org.micromanager.AcqControlDlg.loadAcqSettings(AcqControlDlg.java:1803)
[ ] at org.micromanager.AcqControlDlg.<init>(AcqControlDlg.java:1612)
[ ] at org.micromanager.MMStudioMainFrame$1.windowOpened(MMStudioMainFrame.java:569)
[ ] at java.awt.AWTEventMulticaster.windowOpened(AWTEventMulticaster.java:322)
[ ] at java.awt.Window.processWindowEvent(Window.java:1862)
[ ] at javax.swing.JFrame.processWindowEvent(JFrame.java:274)
[ ] at java.awt.Window.processEvent(Window.java:1823)
[ ] at java.awt.Component.dispatchEventImpl(Component.java:4652)
[ ] at java.awt.Container.dispatchEventImpl(Container.java:2099)
[ ] at java.awt.Window.dispatchEventImpl(Window.java:2478)
[ ] at java.awt.Component.dispatchEvent(Component.java:4482)
[ ] at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:644)
[ ] at java.awt.EventQueue.access$000(EventQueue.java:85)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:603)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:601)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:617)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:615)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.awt.EventQueue.dispatchEvent(EventQueue.java:614)
[ ] at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269)
[ ] at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184)
[ ] at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161)
[ ] at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
2014-12-22T19:59:13.704549 tid5204 [IFO,App]
[ ] java.lang.Exception: Cannot set Core property Shutter to invalid value "Cobolt" in Thread[AWT-EventQueue-0,6,main]
[ ] at mmcorej.MMCoreJJNI.CMMCore_setChannelGroup(Native Method)
[ ] at mmcorej.CMMCore.setChannelGroup(CMMCore.java:665)
[ ] at org.micromanager.acquisition.AcquisitionWrapperEngine.setChannelGroup(AcquisitionWrapperEngine.java:690)
[ ] at org.micromanager.AcqControlDlg$17.actionPerformed(AcqControlDlg.java:1238)
[ ] at javax.swing.JComboBox.fireActionEvent(JComboBox.java:1240)
[ ] at javax.swing.JComboBox.setSelectedItem(JComboBox.java:567)
[ ] at org.micromanager.AcqControlDlg.updateGUIContents(AcqControlDlg.java:2268)
[ ] at org.micromanager.AcqControlDlg.<init>(AcqControlDlg.java:1618)
[ ] at org.micromanager.MMStudioMainFrame$1.windowOpened(MMStudioMainFrame.java:569)
[ ] at java.awt.AWTEventMulticaster.windowOpened(AWTEventMulticaster.java:322)
[ ] at java.awt.Window.processWindowEvent(Window.java:1862)
[ ] at javax.swing.JFrame.processWindowEvent(JFrame.java:274)
[ ] at java.awt.Window.processEvent(Window.java:1823)
[ ] at java.awt.Component.dispatchEventImpl(Component.java:4652)
[ ] at java.awt.Container.dispatchEventImpl(Container.java:2099)
[ ] at java.awt.Window.dispatchEventImpl(Window.java:2478)
[ ] at java.awt.Component.dispatchEvent(Component.java:4482)
[ ] at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:644)
[ ] at java.awt.EventQueue.access$000(EventQueue.java:85)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:603)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:601)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:617)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:615)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.awt.EventQueue.dispatchEvent(EventQueue.java:614)
[ ] at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269)
[ ] at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184)
[ ] at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161)
[ ] at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
2014-12-22T19:59:13.709550 tid5204 [IFO,App]
[ ] java.lang.Exception: Cannot set Core property Shutter to invalid value "Cobolt" in Thread[AWT-EventQueue-0,6,main]
[ ] at mmcorej.MMCoreJJNI.CMMCore_setChannelGroup(Native Method)
[ ] at mmcorej.CMMCore.setChannelGroup(CMMCore.java:665)
[ ] at org.micromanager.acquisition.AcquisitionWrapperEngine.setChannelGroup(AcquisitionWrapperEngine.java:690)
[ ] at org.micromanager.AcqControlDlg$17.actionPerformed(AcqControlDlg.java:1238)
[ ] at javax.swing.JComboBox.fireActionEvent(JComboBox.java:1240)
[ ] at javax.swing.JComboBox.setSelectedItem(JComboBox.java:567)
[ ] at org.micromanager.AcqControlDlg.updateGUIContents(AcqControlDlg.java:2268)
[ ] at org.micromanager.AcqControlDlg.applySettings(AcqControlDlg.java:2427)
[ ] at org.micromanager.AcqControlDlg.<init>(AcqControlDlg.java:1621)
[ ] at org.micromanager.MMStudioMainFrame$1.windowOpened(MMStudioMainFrame.java:569)
[ ] at java.awt.AWTEventMulticaster.windowOpened(AWTEventMulticaster.java:322)
[ ] at java.awt.Window.processWindowEvent(Window.java:1862)
[ ] at javax.swing.JFrame.processWindowEvent(JFrame.java:274)
[ ] at java.awt.Window.processEvent(Window.java:1823)
[ ] at java.awt.Component.dispatchEventImpl(Component.java:4652)
[ ] at java.awt.Container.dispatchEventImpl(Container.java:2099)
[ ] at java.awt.Window.dispatchEventImpl(Window.java:2478)
[ ] at java.awt.Component.dispatchEvent(Component.java:4482)
[ ] at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:644)
[ ] at java.awt.EventQueue.access$000(EventQueue.java:85)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:603)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:601)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:617)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:615)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.awt.EventQueue.dispatchEvent(EventQueue.java:614)
[ ] at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269)
[ ] at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184)
[ ] at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161)
[ ] at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
2014-12-22T19:59:17.968793 tid5204 [dbg,dev:COM3] SetCommand -> l1\r
2014-12-22T19:59:17.996795 tid5204 [dbg,dev:COM3] GetAnswer # retries = 29
2014-12-22T19:59:17.996795 tid5204 [dbg,dev:COM3] GetAnswer <- \nOK\r
2014-12-22T19:59:17.996795 tid5204 [IFO,App] [UI] JToggleButton "toggleShutterButton" toggled on in MMStudioMainFrame.
2014-12-22T19:59:18.901847 tid5204 [dbg,dev:COM3] SetCommand -> l0\r
2014-12-22T19:59:18.906847 tid5204 [dbg,dev:COM3] GetAnswer # retries = 6
2014-12-22T19:59:18.906847 tid5204 [dbg,dev:COM3] GetAnswer <- \nOK\r
2014-12-22T19:59:18.906847 tid5204 [IFO,App] [UI] JToggleButton "toggleShutterButton" toggled off in MMStudioMainFrame.
2014-12-22T19:59:28.537398 tid5204 [IFO,App] [UI] JButton "Hide Details" clicked in ProgressDialog.
2014-12-22T19:59:42.126175 tid5204 [IFO,App] [UI] JButton "Easy mode" clicked in UpdaterFrame.
2014-12-22T19:59:44.702322 tid5204 [IFO,App] [UI] ViewOptions clicked in UpdaterFrame.
2014-12-22T19:59:47.520484 tid5204 [IFO,App] [UI] "ComboBox.list" set to "View files of the 'OpenSPIM' site" in UpdaterFrame.
2014-12-22T19:59:50.868675 tid5204 [IFO,App] [UI] ScrollBar clicked in UpdaterFrame.
2014-12-22T19:59:54.699894 tid5204 [IFO,App] [UI] ViewOptions clicked in UpdaterFrame.
2014-12-22T19:59:56.212981 tid5204 [IFO,App] [UI] "ComboBox.list" set to "View all files" in UpdaterFrame.
2014-12-22T20:00:01.390277 tid5204 [IFO,App] [UI] FileTable clicked in UpdaterFrame.
2014-12-22T20:00:39.670466 tid5204 [dbg,dev:COM3] SetCommand -> l1\r
2014-12-22T20:00:39.697468 tid5204 [dbg,dev:COM3] GetAnswer # retries = 28
2014-12-22T20:00:39.697468 tid5204 [dbg,dev:COM3] GetAnswer <- \nOK\r
2014-12-22T20:00:39.697468 tid5204 [IFO,App] [UI] JToggleButton "toggleShutterButton" toggled on in MMStudioMainFrame.
2014-12-22T20:00:40.139493 tid5204 [dbg,dev:COM3] SetCommand -> l0\r
2014-12-22T20:00:40.147494 tid5204 [dbg,dev:COM3] GetAnswer # retries = 9
2014-12-22T20:00:40.147494 tid5204 [dbg,dev:COM3] GetAnswer <- \nOK\r
2014-12-22T20:00:40.147494 tid5204 [IFO,App] [UI] JToggleButton "toggleShutterButton" toggled off in MMStudioMainFrame.
2014-12-22T20:00:41.938596 tid5204 [IFO,App] Error: No camera configured
2014-12-22T20:00:54.379308 tid5204 [IFO,App] Error: No camera configured
2014-12-22T20:00:57.869507 tid5204 [IFO,App] [UI] JMenu "Tools" clicked in MMStudioMainFrame.
2014-12-22T20:01:06.021974 tid5204 [IFO,App]
[ ] java.lang.Exception: Cannot set Core property Shutter to invalid value "Cobolt" in Thread[AWT-EventQueue-0,6,main]
[ ] at mmcorej.MMCoreJJNI.CMMCore_setChannelGroup(Native Method)
[ ] at mmcorej.CMMCore.setChannelGroup(CMMCore.java:665)
[ ] at org.micromanager.acquisition.AcquisitionWrapperEngine.setChannelGroup(AcquisitionWrapperEngine.java:690)
[ ] at org.micromanager.AcqControlDlg$17.actionPerformed(AcqControlDlg.java:1238)
[ ] at javax.swing.JComboBox.fireActionEvent(JComboBox.java:1240)
[ ] at javax.swing.JComboBox.setSelectedItem(JComboBox.java:567)
[ ] at org.micromanager.AcqControlDlg.updateGUIContents(AcqControlDlg.java:2268)
[ ] at org.micromanager.AcqControlDlg.applySettings(AcqControlDlg.java:2427)
[ ] at org.micromanager.AcqControlDlg.saveAcqSettings(AcqControlDlg.java:1865)
[ ] at org.micromanager.AcqControlDlg$27.actionPerformed(AcqControlDlg.java:1481)
[ ] at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:1995)
[ ] at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2318)
[ ] at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:387)
[ ] at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:242)
[ ] at javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:236)
[ ] at java.awt.Component.processMouseEvent(Component.java:6289)
[ ] at javax.swing.JComponent.processMouseEvent(JComponent.java:3267)
[ ] at java.awt.Component.processEvent(Component.java:6054)
[ ] at java.awt.Container.processEvent(Container.java:2041)
[ ] at java.awt.Component.dispatchEventImpl(Component.java:4652)
[ ] at java.awt.Container.dispatchEventImpl(Container.java:2099)
[ ] at java.awt.Component.dispatchEvent(Component.java:4482)
[ ] at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4577)
[ ] at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4238)
[ ] at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4168)
[ ] at java.awt.Container.dispatchEventImpl(Container.java:2085)
[ ] at java.awt.Window.dispatchEventImpl(Window.java:2478)
[ ] at java.awt.Component.dispatchEvent(Component.java:4482)
[ ] at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:644)
[ ] at java.awt.EventQueue.access$000(EventQueue.java:85)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:603)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:601)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:617)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:615)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.awt.EventQueue.dispatchEvent(EventQueue.java:614)
[ ] at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269)
[ ] at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184)
[ ] at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161)
[ ] at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
2014-12-22T20:01:09.610179 tid5204 [dbg,dev:COM3] SetCommand -> l1\r
2014-12-22T20:01:09.634180 tid5204 [dbg,dev:COM3] GetAnswer # retries = 25
2014-12-22T20:01:09.634180 tid5204 [dbg,dev:COM3] GetAnswer <- \nOK\r
2014-12-22T20:01:10.044204 tid5204 [dbg,dev:COM3] SetCommand -> l0\r
2014-12-22T20:01:10.054204 tid5204 [dbg,dev:COM3] GetAnswer # retries = 11
2014-12-22T20:01:10.054204 tid5204 [dbg,dev:COM3] GetAnswer <- \nOK\r
2014-12-22T20:01:10.054204 tid5204 [IFO,App] [UI] JToggleButton "toggleShutterButton" toggled off in MMStudioMainFrame.
2014-12-22T20:01:12.860365 tid5204 [IFO,App] [UI] JMenu "Plugins" clicked in MMStudioMainFrame.
2014-12-22T20:01:13.840421 tid5204 [IFO,App] Plugin command: Acquire SPIM image
2014-12-22T20:01:15.219500 tid5204 [dbg,Core] Pixel size config: preset Uncalibrated: added setting : Core-Initialize = 1
2014-12-22T20:01:15.219500 tid5204 [dbg,Core] Pixel size config: preset Uncalibrated: set resolution to 1.00000 um/px
2014-12-22T20:01:15.219500 tid5204 [IFO,Core] Will initialize 6 devices
2014-12-22T20:01:15.219500 tid5204 [IFO,Core] Will initialize device COM3
2014-12-22T20:01:15.219500 tid5204 [IFO,Core] Did initialize device COM3
2014-12-22T20:01:15.219500 tid5204 [IFO,Core] Will initialize device Cobolt
2014-12-22T20:01:15.219500 tid5204 [ERR,Core] Error occurred in device Cobolt: Error in device Cobolt: Duplicate property names are not allowed: .
2014-12-22T20:01:15.219500 tid5204 [ERR,Core] Error occurred in device setPixelSizeConfig: Device error encountered.
2014-12-22T20:01:15.220500 tid5204 [IFO,App] Couldn't define uncalibrated pixel size:
2014-12-22T20:01:15.220500 tid5204 [IFO,App] java.lang.Exception: Error in device Cobolt: Duplicate property names are not allowed: .
[ ] at mmcorej.MMCoreJJNI.CMMCore_setPixelSizeConfig(Native Method)
[ ] at mmcorej.CMMCore.setPixelSizeConfig(CMMCore.java:777)
[ ] at spim.SPIMAcquisition.ensurePixelResolution(SPIMAcquisition.java:263)
[ ] at spim.SPIMAcquisition.show(SPIMAcquisition.java:220)
[ ] at org.micromanager.MMStudioMainFrame.displayPlugin(MMStudioMainFrame.java:2755)
[ ] at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:157)
[ ] at org.micromanager.MMStudioMainFrame$49.run(MMStudioMainFrame.java:2720)
[ ] at org.micromanager.utils.GUIUtils$3.actionPerformed(GUIUtils.java:303)
[ ] at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:1995)
[ ] at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2318)
[ ] at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:387)
[ ] at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:242)
[ ] at javax.swing.AbstractButton.doClick(AbstractButton.java:357)
[ ] at javax.swing.plaf.basic.BasicMenuItemUI.doClick(BasicMenuItemUI.java:809)
[ ] at javax.swing.plaf.basic.BasicMenuItemUI$Handler.mouseReleased(BasicMenuItemUI.java:850)
[ ] at java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:272)
[ ] at java.awt.Component.processMouseEvent(Component.java:6289)
[ ] at javax.swing.JComponent.processMouseEvent(JComponent.java:3267)
[ ] at java.awt.Component.processEvent(Component.java:6054)
[ ] at java.awt.Container.processEvent(Container.java:2041)
[ ] at java.awt.Component.dispatchEventImpl(Component.java:4652)
[ ] at java.awt.Container.dispatchEventImpl(Container.java:2099)
[ ] at java.awt.Component.dispatchEvent(Component.java:4482)
[ ] at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4577)
[ ] at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4238)
[ ] at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4168)
[ ] at java.awt.Container.dispatchEventImpl(Container.java:2085)
[ ] at java.awt.Window.dispatchEventImpl(Window.java:2478)
[ ] at java.awt.Component.dispatchEvent(Component.java:4482)
[ ] at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:644)
[ ] at java.awt.EventQueue.access$000(EventQueue.java:85)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:603)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:601)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:617)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:615)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.awt.EventQueue.dispatchEvent(EventQueue.java:614)
[ ] at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269)
[ ] at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184)
[ ] at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161)
[ ] at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
2014-12-22T20:01:15.220500 tid5204 [IFO,App] Uncaught exception in AWT/Swing event dispatch thread:
2014-12-22T20:01:15.220500 tid5204 [IFO,App] java.lang.IllegalArgumentException: makeStageSliderSafe given a non-Stage device
2014-12-22T20:01:15.221500 tid5204 [IFO,App] at spim.SPIMAcquisition.makeStageSlider(SPIMAcquisition.java:1033)
2014-12-22T20:01:15.221500 tid5204 [IFO,App] at spim.SPIMAcquisition.initUI(SPIMAcquisition.java:358)
2014-12-22T20:01:15.221500 tid5204 [IFO,App] at spim.SPIMAcquisition.show(SPIMAcquisition.java:221)
2014-12-22T20:01:15.221500 tid5204 [IFO,App] at org.micromanager.MMStudioMainFrame.displayPlugin(MMStudioMainFrame.java:2755)
2014-12-22T20:01:15.221500 tid5204 [IFO,App] at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:157)
2014-12-22T20:01:15.221500 tid5204 [IFO,App] at org.micromanager.MMStudioMainFrame$49.run(MMStudioMainFrame.java:2720)
2014-12-22T20:01:15.221500 tid5204 [IFO,App] at org.micromanager.utils.GUIUtils$3.actionPerformed(GUIUtils.java:303)
2014-12-22T20:01:15.221500 tid5204 [IFO,App] at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:1995)
2014-12-22T20:01:15.221500 tid5204 [IFO,App] at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2318)
2014-12-22T20:01:15.221500 tid5204 [IFO,App] at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:387)
2014-12-22T20:01:15.221500 tid5204 [IFO,App] at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:242)
2014-12-22T20:01:15.221500 tid5204 [IFO,App] at javax.swing.AbstractButton.doClick(AbstractButton.java:357)
2014-12-22T20:01:15.221500 tid5204 [IFO,App] at javax.swing.plaf.basic.BasicMenuItemUI.doClick(BasicMenuItemUI.java:809)
2014-12-22T20:01:15.221500 tid5204 [IFO,App] at javax.swing.plaf.basic.BasicMenuItemUI$Handler.mouseReleased(BasicMenuItemUI.java:850)
2014-12-22T20:01:15.221500 tid5204 [IFO,App] at java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:272)
2014-12-22T20:01:15.221500 tid5204 [IFO,App] at java.awt.Component.processMouseEvent(Component.java:6289)
2014-12-22T20:01:15.221500 tid5204 [IFO,App] at javax.swing.JComponent.processMouseEvent(JComponent.java:3267)
2014-12-22T20:01:15.221500 tid5204 [IFO,App] at java.awt.Component.processEvent(Component.java:6054)
2014-12-22T20:01:15.221500 tid5204 [IFO,App] at java.awt.Container.processEvent(Container.java:2041)
2014-12-22T20:01:15.221500 tid5204 [IFO,App] at java.awt.Component.dispatchEventImpl(Component.java:4652)
2014-12-22T20:01:15.221500 tid5204 [IFO,App] at java.awt.Container.dispatchEventImpl(Container.java:2099)
2014-12-22T20:01:15.221500 tid5204 [IFO,App] at java.awt.Component.dispatchEvent(Component.java:4482)
2014-12-22T20:01:15.221500 tid5204 [IFO,App] at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4577)
2014-12-22T20:01:15.221500 tid5204 [IFO,App] at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4238)
2014-12-22T20:01:15.221500 tid5204 [IFO,App] at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4168)
2014-12-22T20:01:15.221500 tid5204 [IFO,App] at java.awt.Container.dispatchEventImpl(Container.java:2085)
2014-12-22T20:01:15.221500 tid5204 [IFO,App] at java.awt.Window.dispatchEventImpl(Window.java:2478)
2014-12-22T20:01:15.221500 tid5204 [IFO,App] at java.awt.Component.dispatchEvent(Component.java:4482)
2014-12-22T20:01:15.221500 tid5204 [IFO,App] at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:644)
2014-12-22T20:01:15.221500 tid5204 [IFO,App] at java.awt.EventQueue.access$000(EventQueue.java:85)
2014-12-22T20:01:15.221500 tid5204 [IFO,App] at java.awt.EventQueue$1.run(EventQueue.java:603)
2014-12-22T20:01:15.221500 tid5204 [IFO,App] at java.awt.EventQueue$1.run(EventQueue.java:601)
2014-12-22T20:01:15.221500 tid5204 [IFO,App] at java.security.AccessController.doPrivileged(Native Method)
2014-12-22T20:01:15.221500 tid5204 [IFO,App] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
2014-12-22T20:01:15.221500 tid5204 [IFO,App] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
2014-12-22T20:01:15.221500 tid5204 [IFO,App] at java.awt.EventQueue$2.run(EventQueue.java:617)
2014-12-22T20:01:15.221500 tid5204 [IFO,App] at java.awt.EventQueue$2.run(EventQueue.java:615)
2014-12-22T20:01:15.221500 tid5204 [IFO,App] at java.security.AccessController.doPrivileged(Native Method)
2014-12-22T20:01:15.221500 tid5204 [IFO,App] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
2014-12-22T20:01:15.221500 tid5204 [IFO,App] at java.awt.EventQueue.dispatchEvent(EventQueue.java:614)
2014-12-22T20:01:15.221500 tid5204 [IFO,App] at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269)
2014-12-22T20:01:15.221500 tid5204 [IFO,App] at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184)
2014-12-22T20:01:15.221500 tid5204 [IFO,App] at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174)
2014-12-22T20:01:15.221500 tid5204 [IFO,App] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169)
2014-12-22T20:01:15.221500 tid5204 [IFO,App] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161)
2014-12-22T20:01:15.221500 tid5204 [IFO,App] at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
2014-12-22T20:01:16.695584 tid5204 [IFO,App]
[ ] java.lang.Exception: Cannot set Core property Shutter to invalid value "Cobolt" in Thread[AWT-EventQueue-0,6,main]
[ ] at mmcorej.MMCoreJJNI.CMMCore_setChannelGroup(Native Method)
[ ] at mmcorej.CMMCore.setChannelGroup(CMMCore.java:665)
[ ] at org.micromanager.acquisition.AcquisitionWrapperEngine.setChannelGroup(AcquisitionWrapperEngine.java:690)
[ ] at org.micromanager.AcqControlDlg$17.actionPerformed(AcqControlDlg.java:1238)
[ ] at javax.swing.JComboBox.fireActionEvent(JComboBox.java:1240)
[ ] at javax.swing.JComboBox.setSelectedItem(JComboBox.java:567)
[ ] at org.micromanager.AcqControlDlg.updateGUIContents(AcqControlDlg.java:2268)
[ ] at org.micromanager.AcqControlDlg.applySettings(AcqControlDlg.java:2427)
[ ] at org.micromanager.AcqControlDlg.saveAcqSettings(AcqControlDlg.java:1865)
[ ] at org.micromanager.AcqControlDlg.close(AcqControlDlg.java:1710)
[ ] at org.micromanager.MMStudioMainFrame.cleanupOnClose(MMStudioMainFrame.java:2928)
[ ] at org.micromanager.MMStudioMainFrame.closeSequence(MMStudioMainFrame.java:3027)
[ ] at MMStudioPlugin$2.run(MMStudioPlugin.java:102)
[ ] at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:199)
[ ] at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:642)
[ ] at java.awt.EventQueue.access$000(EventQueue.java:85)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:603)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:601)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.awt.EventQueue.dispatchEvent(EventQueue.java:612)
[ ] at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269)
[ ] at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184)
[ ] at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161)
[ ] at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
-------------- next part --------------
2014-12-22T19:57:34.005586 tid5568 [IFO,LogManager] Enabled primary log file C:\Users\User\Desktop\OpenSPIM.app\CoreLogs\CoreLog20141222T195733_pid1640.txt
2014-12-22T19:57:34.005586 tid5568 [IFO,LogManager] Switching primary log level from info to trace
2014-12-22T19:57:34.021186 tid5568 [IFO,LogManager] Switched primary log level from info to trace
2014-12-22T19:57:34.021186 tid5568 [IFO,App] User: User
2014-12-22T19:57:34.021186 tid5568 [IFO,App] Host: OpenSPIM01
2014-12-22T19:57:34.021186 tid5568 [IFO,App] MM Studio version: 1.4.x dev
2014-12-22T19:57:34.021186 tid5568 [IFO,App] MMCore version 4.0.4
2014-12-22T19:57:34.021186 tid5568 [IFO,App] Device API version 60, Module API version 10
2014-12-22T19:57:34.021186 tid5568 [IFO,App] Operating System: Windows 7 (x86) 6.1
2014-12-22T19:57:34.021186 tid5568 [IFO,App] JVM: Java HotSpot(TM) Client VM, version 1.6.0_24, 32-bit
2014-12-22T19:57:34.021186 tid5568 [dbg,Core] Will set circular buffer size to 25 MB
2014-12-22T19:57:34.021186 tid5568 [dbg,Core] Did set circular buffer size to 25 MB
2014-12-22T19:57:34.161586 tid6648 [IFO,App] Attempting to install plugin spim.SPIMAcquisition
2014-12-22T19:57:34.161586 tid6648 [IFO,App] Attempting to install autofocus plugin Autofocus
2014-12-22T19:57:34.177186 tid6648 [IFO,App] Attempting to install autofocus plugin AutofocusDuo
2014-12-22T19:57:34.177186 tid6648 [IFO,App] Attempting to install autofocus plugin AutofocusTB
2014-12-22T19:57:34.177186 tid6648 [IFO,App] Attempting to install autofocus plugin OughtaFocus
2014-12-22T19:57:36.111589 tid5568 [dbg,Core] Will set property: Core-Initialize = 0
2014-12-22T19:57:36.111589 tid5568 [dbg,Core] Will unload all devices
2014-12-22T19:57:36.111589 tid5568 [IFO,Core] Did unload all devices
2014-12-22T19:57:36.111589 tid5568 [dbg,App] Notification for Device: Core Property: Initialize changed to value: 0
2014-12-22T19:57:36.111589 tid5568 [dbg,Core] Did set property: Core-Initialize = 0
2014-12-22T19:57:36.111589 tid5568 [dbg,Core] Will load device COM3 from SerialManager
2014-12-22T19:57:36.127190 tid5568 [IFO,Core] Did load device COM3 from SerialManager; label = COM3
2014-12-22T19:57:36.127190 tid5568 [dbg,Core] Will load device Cobolt from Cobolt
2014-12-22T19:57:36.127190 tid5568 [IFO,Core] Did load device Cobolt from Cobolt; label = Cobolt
2014-12-22T19:57:36.127190 tid5568 [dbg,Core] Will load device HamamatsuHam_DCAM from HamamatsuHam
2014-12-22T19:57:36.127190 tid5568 [IFO,Core] Did load device HamamatsuHam_DCAM from HamamatsuHam; label = OrcaFlash
2014-12-22T19:57:36.127190 tid5568 [dbg,Core] Will load device Picard Twister from PicardStage
2014-12-22T19:57:36.127190 tid5568 [IFO,Core] Did load device Picard Twister from PicardStage; label = Picard Twister
2014-12-22T19:57:36.127190 tid5568 [dbg,Core] Will load device Picard Z Stage from PicardStage
2014-12-22T19:57:36.127190 tid5568 [IFO,Core] Did load device Picard Z Stage from PicardStage; label = Picard Z Stage
2014-12-22T19:57:36.127190 tid5568 [dbg,Core] Will load device Picard XY Stage from PicardStage
2014-12-22T19:57:36.127190 tid5568 [IFO,Core] Did load device Picard XY Stage from PicardStage; label = Picard XY Stage
2014-12-22T19:57:36.127190 tid5568 [dbg,Core] Will set property: Cobolt-Max Power = 60.0000
2014-12-22T19:57:36.127190 tid5568 [dbg,Core] Did set property: Cobolt-Max Power = 60.0000
2014-12-22T19:57:36.127190 tid5568 [dbg,Core] Will set property: Cobolt-Port = COM3
2014-12-22T19:57:36.127190 tid5568 [dbg,Core] Did set property: Cobolt-Port = COM3
2014-12-22T19:57:36.127190 tid5568 [dbg,Core] Will set property: Picard Twister-Serial Number = 37
2014-12-22T19:57:36.142790 tid5568 [dbg,Core] Did set property: Picard Twister-Serial Number = 37
2014-12-22T19:57:36.142790 tid5568 [dbg,Core] Will set property: Picard Z Stage-Serial Number = 140
2014-12-22T19:57:36.173990 tid5568 [dbg,Core] Did set property: Picard Z Stage-Serial Number = 140
2014-12-22T19:57:36.173990 tid5568 [dbg,Core] Will set property: Picard XY Stage-Serial Number (X) = 139
2014-12-22T19:57:36.173990 tid5568 [dbg,Core] Did set property: Picard XY Stage-Serial Number (X) = 139
2014-12-22T19:57:36.173990 tid5568 [dbg,Core] Will set property: Picard XY Stage-Serial Number (Y) = 141
2014-12-22T19:57:36.236390 tid5568 [dbg,Core] Did set property: Picard XY Stage-Serial Number (Y) = 141
2014-12-22T19:57:36.236390 tid5568 [dbg,Core] Will set property: Picard XY Stage-X-Max = 8000
2014-12-22T19:57:36.236390 tid5568 [dbg,Core] Did set property: Picard XY Stage-X-Max = 8000
2014-12-22T19:57:36.236390 tid5568 [dbg,Core] Will set property: Picard XY Stage-X-Min = 1
2014-12-22T19:57:36.236390 tid5568 [dbg,Core] Did set property: Picard XY Stage-X-Min = 1
2014-12-22T19:57:36.236390 tid5568 [dbg,Core] Will set property: Picard XY Stage-Y-Max = 8000
2014-12-22T19:57:36.236390 tid5568 [dbg,Core] Did set property: Picard XY Stage-Y-Max = 8000
2014-12-22T19:57:36.236390 tid5568 [dbg,Core] Will set property: Picard XY Stage-Y-Min = 1
2014-12-22T19:57:36.236390 tid5568 [dbg,Core] Did set property: Picard XY Stage-Y-Min = 1
2014-12-22T19:57:36.236390 tid5568 [dbg,Core] Will set property: COM3-AnswerTimeout = 500.0000
2014-12-22T19:57:36.236390 tid5568 [dbg,Core] Did set property: COM3-AnswerTimeout = 500.0000
2014-12-22T19:57:36.236390 tid5568 [dbg,Core] Will set property: COM3-BaudRate = 115200
2014-12-22T19:57:36.236390 tid5568 [dbg,Core] Did set property: COM3-BaudRate = 115200
2014-12-22T19:57:36.236390 tid5568 [dbg,Core] Will set property: COM3-DelayBetweenCharsMs = 0.0000
2014-12-22T19:57:36.236390 tid5568 [dbg,Core] Did set property: COM3-DelayBetweenCharsMs = 0.0000
2014-12-22T19:57:36.236390 tid5568 [dbg,Core] Will set property: COM3-Handshaking = Off
2014-12-22T19:57:36.236390 tid5568 [dbg,Core] Did set property: COM3-Handshaking = Off
2014-12-22T19:57:36.236390 tid5568 [dbg,Core] Will set property: COM3-Parity = None
2014-12-22T19:57:36.236390 tid5568 [dbg,Core] Did set property: COM3-Parity = None
2014-12-22T19:57:36.236390 tid5568 [dbg,Core] Will set property: COM3-StopBits = 1
2014-12-22T19:57:36.236390 tid5568 [dbg,Core] Did set property: COM3-StopBits = 1
2014-12-22T19:57:36.236390 tid5568 [dbg,Core] Will set property: COM3-Verbose = 1
2014-12-22T19:57:36.236390 tid5568 [dbg,Core] Did set property: COM3-Verbose = 1
2014-12-22T19:57:36.236390 tid5568 [dbg,Core] Will set property: Core-Initialize = 1
2014-12-22T19:57:36.236390 tid5568 [IFO,Core] Will initialize 6 devices
2014-12-22T19:57:36.236390 tid5568 [IFO,Core] Will initialize device COM3
2014-12-22T19:57:36.236390 tid5568 [dbg,dev:COM3] Attempting to set baud of COM3 to 115200
2014-12-22T19:57:36.251990 tid5568 [dbg,dev:COM3] Attempting to set flow of COM3 to none
2014-12-22T19:57:36.267590 tid5568 [dbg,dev:COM3] Attempting to set parity of COM3 to none
2014-12-22T19:57:36.267590 tid5568 [dbg,dev:COM3] Attempting to set stopBits of COM3 to 1
2014-12-22T19:57:36.283190 tid5568 [IFO,Core] Did initialize device COM3
2014-12-22T19:57:36.283190 tid5568 [IFO,Core] Will initialize device Cobolt
2014-12-22T19:57:36.283190 tid5568 [dbg,dev:COM3] SetCommand -> i? \r
2014-12-22T19:57:36.345590 tid5568 [dbg,dev:COM3] GetAnswer # retries = 5
2014-12-22T19:57:36.345590 tid5568 [dbg,dev:COM3] GetAnswer <- 0.0\r
2014-12-22T19:57:36.345590 tid5568 [dbg,dev:COM3] SetCommand -> f? \r
2014-12-22T19:57:36.392390 tid5568 [dbg,dev:COM3] GetAnswer # retries = 4
2014-12-22T19:57:36.392390 tid5568 [dbg,dev:COM3] GetAnswer <- \n0\r
2014-12-22T19:57:36.392390 tid5568 [dbg,dev:COM3] SetCommand -> hrs? \r
2014-12-22T19:57:36.439190 tid5568 [dbg,dev:COM3] GetAnswer # retries = 4
2014-12-22T19:57:36.439190 tid5568 [dbg,dev:COM3] GetAnswer <- \n114.13\r
2014-12-22T19:57:36.439190 tid5568 [dbg,dev:COM3] SetCommand -> ilk? \r
2014-12-22T19:57:36.485990 tid5568 [dbg,dev:COM3] GetAnswer # retries = 4
2014-12-22T19:57:36.485990 tid5568 [dbg,dev:COM3] GetAnswer <- \n0\r
2014-12-22T19:57:36.485990 tid5568 [dbg,dev:COM3] SetCommand -> l? \r
2014-12-22T19:57:36.532790 tid5568 [dbg,dev:COM3] GetAnswer # retries = 4
2014-12-22T19:57:36.532790 tid5568 [dbg,dev:COM3] GetAnswer <- \n0\r
2014-12-22T19:57:36.532790 tid5568 [dbg,dev:COM3] SetCommand -> l? \r
2014-12-22T19:57:36.563990 tid5568 [dbg,dev:COM3] GetAnswer # retries = 3
2014-12-22T19:57:36.563990 tid5568 [dbg,dev:COM3] GetAnswer <- \n0\r
2014-12-22T19:57:36.563990 tid5568 [dbg,dev:COM3] SetCommand -> pa? \r
2014-12-22T19:57:36.626390 tid5568 [dbg,dev:COM3] GetAnswer # retries = 5
2014-12-22T19:57:36.626390 tid5568 [dbg,dev:COM3] GetAnswer <- \n-0.0000\r
2014-12-22T19:57:36.626390 tid5568 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-22T19:57:36.673190 tid5568 [dbg,dev:COM3] GetAnswer # retries = 4
2014-12-22T19:57:36.673190 tid5568 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-22T19:57:36.673190 tid5568 [dbg,dev:COM3] SetCommand -> sn? \r
2014-12-22T19:57:36.719991 tid5568 [dbg,dev:COM3] GetAnswer # retries = 4
2014-12-22T19:57:36.719991 tid5568 [dbg,dev:COM3] GetAnswer <- \n488006152\r
2014-12-22T19:57:36.719991 tid5568 [dbg,dev:COM3] SetCommand -> ver? \r
2014-12-22T19:57:36.751191 tid5568 [dbg,dev:COM3] GetAnswer # retries = 3
2014-12-22T19:57:36.751191 tid5568 [dbg,dev:COM3] GetAnswer <- \n6.65\r
2014-12-22T19:57:36.751191 tid5568 [dbg,dev:COM3] SetCommand -> l0\r
2014-12-22T19:57:36.797991 tid5568 [dbg,dev:COM3] GetAnswer # retries = 4
2014-12-22T19:57:36.797991 tid5568 [dbg,dev:COM3] GetAnswer <- \nOK\r
2014-12-22T19:57:36.797991 tid5568 [IFO,Core] Did initialize device Cobolt
2014-12-22T19:57:36.797991 tid5568 [IFO,Core] Default shutter set to Cobolt
2014-12-22T19:57:36.797991 tid5568 [IFO,Core] Will initialize device OrcaFlash
2014-12-22T19:57:37.761244 tid5568 [ERR,Core] Error occurred in device OrcaFlash: Error in device OrcaFlash: Error code 40 (28 hex).
2014-12-22T19:57:37.762244 tid5568 [dbg,Core] Will set property: Core-Camera = OrcaFlash
2014-12-22T19:57:37.762244 tid5568 [dbg,Core] Will set property: Core-Shutter = Cobolt
2014-12-22T19:57:37.762244 tid5568 [dbg,Core] Will set property: Core-Focus = Picard Z Stage
2014-12-22T19:57:37.762244 tid5568 [dbg,Core] Will set property: Core-AutoShutter = 1
2014-12-22T19:57:37.762244 tid5568 [dbg,Core] Autoshutter turned on
2014-12-22T19:57:37.762244 tid5568 [dbg,App] Notification for Device: Core Property: AutoShutter changed to value: 1
2014-12-22T19:57:37.762244 tid5568 [dbg,Core] Did set property: Core-AutoShutter = 1
2014-12-22T19:57:37.763244 tid5568 [IFO,App]
[ ] java.lang.Exception: Line 38: Property,Core,Initialize,1
[ ] Error in device OrcaFlash: Error code 40 (28 hex).
[ ]
[ ] Line 43: Property,Core,Camera,OrcaFlash
[ ] Cannot set Core property Camera to invalid value "OrcaFlash"
[ ]
[ ] Line 44: Property,Core,Shutter,Cobolt
[ ] Cannot set Core property Shutter to invalid value "Cobolt"
[ ]
[ ] Line 45: Property,Core,Focus,Picard Z Stage
[ ] Cannot set Core property Focus to invalid value "Picard Z Stage"
[ ]
[ ] in Thread[AWT-EventQueue-0,6,main]
[ ] at mmcorej.MMCoreJJNI.CMMCore_loadSystemConfiguration(Native Method)
[ ] at mmcorej.CMMCore.loadSystemConfiguration(CMMCore.java:313)
[ ] at org.micromanager.MMStudioMainFrame.loadSystemConfiguration(MMStudioMainFrame.java:3151)
[ ] at org.micromanager.MMStudioMainFrame.access$2200(MMStudioMainFrame.java:157)
[ ] at org.micromanager.MMStudioMainFrame$1.windowOpened(MMStudioMainFrame.java:560)
[ ] at java.awt.AWTEventMulticaster.windowOpened(AWTEventMulticaster.java:322)
[ ] at java.awt.Window.processWindowEvent(Window.java:1862)
[ ] at javax.swing.JFrame.processWindowEvent(JFrame.java:274)
[ ] at java.awt.Window.processEvent(Window.java:1823)
[ ] at java.awt.Component.dispatchEventImpl(Component.java:4652)
[ ] at java.awt.Container.dispatchEventImpl(Container.java:2099)
[ ] at java.awt.Window.dispatchEventImpl(Window.java:2478)
[ ] at java.awt.Component.dispatchEvent(Component.java:4482)
[ ] at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:644)
[ ] at java.awt.EventQueue.access$000(EventQueue.java:85)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:603)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:601)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:617)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:615)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.awt.EventQueue.dispatchEvent(EventQueue.java:614)
[ ] at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269)
[ ] at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184)
[ ] at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161)
[ ] at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
2014-12-22T19:57:39.742357 tid5568 [dbg,dev:COM3] SetCommand -> l? \r
2014-12-22T19:57:39.747358 tid5568 [dbg,dev:COM3] GetAnswer # retries = 6
2014-12-22T19:57:39.747358 tid5568 [dbg,dev:COM3] GetAnswer <- \n0\r
2014-12-22T19:57:39.747358 tid5568 [ERR,Core] Error occurred in device CMMCore::getShutterOpen(): Error in device Cobolt: Invalid state (position) requested.
2014-12-22T19:57:39.747358 tid5568 [IFO,App]
[ ] java.lang.Exception: Error in device Cobolt: Invalid state (position) requested. in Thread[AWT-EventQueue-0,6,main]
[ ] at mmcorej.MMCoreJJNI.CMMCore_getShutterOpen__SWIG_0(Native Method)
[ ] at mmcorej.CMMCore.getShutterOpen(CMMCore.java:885)
[ ] at org.micromanager.MMStudioMainFrame.updateGUI(MMStudioMainFrame.java:2812)
[ ] at org.micromanager.MMStudioMainFrame.updateGUI(MMStudioMainFrame.java:2782)
[ ] at org.micromanager.MMStudioMainFrame.initializeGUI(MMStudioMainFrame.java:2701)
[ ] at org.micromanager.MMStudioMainFrame.loadSystemConfiguration(MMStudioMainFrame.java:3165)
[ ] at org.micromanager.MMStudioMainFrame.access$2200(MMStudioMainFrame.java:157)
[ ] at org.micromanager.MMStudioMainFrame$1.windowOpened(MMStudioMainFrame.java:560)
[ ] at java.awt.AWTEventMulticaster.windowOpened(AWTEventMulticaster.java:322)
[ ] at java.awt.Window.processWindowEvent(Window.java:1862)
[ ] at javax.swing.JFrame.processWindowEvent(JFrame.java:274)
[ ] at java.awt.Window.processEvent(Window.java:1823)
[ ] at java.awt.Component.dispatchEventImpl(Component.java:4652)
[ ] at java.awt.Container.dispatchEventImpl(Container.java:2099)
[ ] at java.awt.Window.dispatchEventImpl(Window.java:2478)
[ ] at java.awt.Component.dispatchEvent(Component.java:4482)
[ ] at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:644)
[ ] at java.awt.EventQueue.access$000(EventQueue.java:85)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:603)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:601)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:617)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:615)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.awt.EventQueue.dispatchEvent(EventQueue.java:614)
[ ] at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269)
[ ] at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184)
[ ] at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161)
[ ] at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
2014-12-22T19:57:39.751358 tid5568 [IFO,App] Startup script file (C:\Users\User\Desktop\OpenSPIM.app\MMStartup.bsh) not present.
2014-12-22T19:57:39.798361 tid5568 [IFO,App]
[ ] java.lang.Exception: Cannot set Core property Shutter to invalid value "Cobolt" in Thread[AWT-EventQueue-0,6,main]
[ ] at mmcorej.MMCoreJJNI.CMMCore_setChannelGroup(Native Method)
[ ] at mmcorej.CMMCore.setChannelGroup(CMMCore.java:665)
[ ] at org.micromanager.acquisition.AcquisitionWrapperEngine.setChannelGroup(AcquisitionWrapperEngine.java:690)
[ ] at org.micromanager.AcqControlDlg.loadAcqSettings(AcqControlDlg.java:1803)
[ ] at org.micromanager.AcqControlDlg.<init>(AcqControlDlg.java:1612)
[ ] at org.micromanager.MMStudioMainFrame$1.windowOpened(MMStudioMainFrame.java:569)
[ ] at java.awt.AWTEventMulticaster.windowOpened(AWTEventMulticaster.java:322)
[ ] at java.awt.Window.processWindowEvent(Window.java:1862)
[ ] at javax.swing.JFrame.processWindowEvent(JFrame.java:274)
[ ] at java.awt.Window.processEvent(Window.java:1823)
[ ] at java.awt.Component.dispatchEventImpl(Component.java:4652)
[ ] at java.awt.Container.dispatchEventImpl(Container.java:2099)
[ ] at java.awt.Window.dispatchEventImpl(Window.java:2478)
[ ] at java.awt.Component.dispatchEvent(Component.java:4482)
[ ] at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:644)
[ ] at java.awt.EventQueue.access$000(EventQueue.java:85)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:603)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:601)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:617)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:615)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.awt.EventQueue.dispatchEvent(EventQueue.java:614)
[ ] at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269)
[ ] at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184)
[ ] at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161)
[ ] at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
2014-12-22T19:57:39.844363 tid5568 [IFO,App]
[ ] java.lang.Exception: Cannot set Core property Shutter to invalid value "Cobolt" in Thread[AWT-EventQueue-0,6,main]
[ ] at mmcorej.MMCoreJJNI.CMMCore_setChannelGroup(Native Method)
[ ] at mmcorej.CMMCore.setChannelGroup(CMMCore.java:665)
[ ] at org.micromanager.acquisition.AcquisitionWrapperEngine.setChannelGroup(AcquisitionWrapperEngine.java:690)
[ ] at org.micromanager.AcqControlDlg$17.actionPerformed(AcqControlDlg.java:1238)
[ ] at javax.swing.JComboBox.fireActionEvent(JComboBox.java:1240)
[ ] at javax.swing.JComboBox.setSelectedItem(JComboBox.java:567)
[ ] at org.micromanager.AcqControlDlg.updateGUIContents(AcqControlDlg.java:2268)
[ ] at org.micromanager.AcqControlDlg.<init>(AcqControlDlg.java:1618)
[ ] at org.micromanager.MMStudioMainFrame$1.windowOpened(MMStudioMainFrame.java:569)
[ ] at java.awt.AWTEventMulticaster.windowOpened(AWTEventMulticaster.java:322)
[ ] at java.awt.Window.processWindowEvent(Window.java:1862)
[ ] at javax.swing.JFrame.processWindowEvent(JFrame.java:274)
[ ] at java.awt.Window.processEvent(Window.java:1823)
[ ] at java.awt.Component.dispatchEventImpl(Component.java:4652)
[ ] at java.awt.Container.dispatchEventImpl(Container.java:2099)
[ ] at java.awt.Window.dispatchEventImpl(Window.java:2478)
[ ] at java.awt.Component.dispatchEvent(Component.java:4482)
[ ] at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:644)
[ ] at java.awt.EventQueue.access$000(EventQueue.java:85)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:603)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:601)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:617)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:615)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.awt.EventQueue.dispatchEvent(EventQueue.java:614)
[ ] at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269)
[ ] at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184)
[ ] at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161)
[ ] at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
2014-12-22T19:57:39.851364 tid5568 [IFO,App]
[ ] java.lang.Exception: Cannot set Core property Shutter to invalid value "Cobolt" in Thread[AWT-EventQueue-0,6,main]
[ ] at mmcorej.MMCoreJJNI.CMMCore_setChannelGroup(Native Method)
[ ] at mmcorej.CMMCore.setChannelGroup(CMMCore.java:665)
[ ] at org.micromanager.acquisition.AcquisitionWrapperEngine.setChannelGroup(AcquisitionWrapperEngine.java:690)
[ ] at org.micromanager.AcqControlDlg$17.actionPerformed(AcqControlDlg.java:1238)
[ ] at javax.swing.JComboBox.fireActionEvent(JComboBox.java:1240)
[ ] at javax.swing.JComboBox.setSelectedItem(JComboBox.java:567)
[ ] at org.micromanager.AcqControlDlg.updateGUIContents(AcqControlDlg.java:2268)
[ ] at org.micromanager.AcqControlDlg.applySettings(AcqControlDlg.java:2427)
[ ] at org.micromanager.AcqControlDlg.<init>(AcqControlDlg.java:1621)
[ ] at org.micromanager.MMStudioMainFrame$1.windowOpened(MMStudioMainFrame.java:569)
[ ] at java.awt.AWTEventMulticaster.windowOpened(AWTEventMulticaster.java:322)
[ ] at java.awt.Window.processWindowEvent(Window.java:1862)
[ ] at javax.swing.JFrame.processWindowEvent(JFrame.java:274)
[ ] at java.awt.Window.processEvent(Window.java:1823)
[ ] at java.awt.Component.dispatchEventImpl(Component.java:4652)
[ ] at java.awt.Container.dispatchEventImpl(Container.java:2099)
[ ] at java.awt.Window.dispatchEventImpl(Window.java:2478)
[ ] at java.awt.Component.dispatchEvent(Component.java:4482)
[ ] at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:644)
[ ] at java.awt.EventQueue.access$000(EventQueue.java:85)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:603)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:601)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:617)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:615)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.awt.EventQueue.dispatchEvent(EventQueue.java:614)
[ ] at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269)
[ ] at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184)
[ ] at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161)
[ ] at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
2014-12-22T19:57:56.974343 tid5568 [IFO,App] [UI] JScrollPane clicked in UpdaterFrame.
2014-12-22T19:57:58.179412 tid5568 [IFO,App] [UI] FileTable clicked in UpdaterFrame.
2014-12-22T19:58:12.705243 tid5568 [IFO,App] [UI] JScrollPane clicked in UpdaterFrame.
2014-12-22T19:58:14.089322 tid5568 [IFO,App] [UI] JButton "Easy mode" clicked in UpdaterFrame.
2014-12-22T19:58:20.037662 tid5568 [IFO,App] [UI] JComboBox clicked in UpdaterFrame.
2014-12-22T19:58:21.112724 tid5568 [IFO,App] [UI] JScrollPane clicked in UpdaterFrame.
2014-12-22T19:58:29.125182 tid5568 [IFO,App] [UI] JComboBox clicked in UpdaterFrame.
2014-12-22T19:58:30.352252 tid5568 [IFO,App] [UI] "ComboBox.list" set to "Uninstall" in UpdaterFrame.
2014-12-22T19:58:43.991032 tid5568 [IFO,App] [UI] JButton "Advanced mode" clicked in UpdaterFrame.
2014-12-22T19:58:56.536750 tid5568 [IFO,App] [UI] JButton "Apply changes" clicked in UpdaterFrame.
2014-12-22T19:59:01.002005 tid5568 [IFO,App]
[ ] java.lang.Exception: Cannot set Core property Shutter to invalid value "Cobolt" in Thread[AWT-EventQueue-0,6,main]
[ ] at mmcorej.MMCoreJJNI.CMMCore_setChannelGroup(Native Method)
[ ] at mmcorej.CMMCore.setChannelGroup(CMMCore.java:665)
[ ] at org.micromanager.acquisition.AcquisitionWrapperEngine.setChannelGroup(AcquisitionWrapperEngine.java:690)
[ ] at org.micromanager.AcqControlDlg$17.actionPerformed(AcqControlDlg.java:1238)
[ ] at javax.swing.JComboBox.fireActionEvent(JComboBox.java:1240)
[ ] at javax.swing.JComboBox.setSelectedItem(JComboBox.java:567)
[ ] at org.micromanager.AcqControlDlg.updateGUIContents(AcqControlDlg.java:2268)
[ ] at org.micromanager.AcqControlDlg.applySettings(AcqControlDlg.java:2427)
[ ] at org.micromanager.AcqControlDlg.saveAcqSettings(AcqControlDlg.java:1865)
[ ] at org.micromanager.AcqControlDlg.close(AcqControlDlg.java:1710)
[ ] at org.micromanager.MMStudioMainFrame.cleanupOnClose(MMStudioMainFrame.java:2928)
[ ] at org.micromanager.MMStudioMainFrame.closeSequence(MMStudioMainFrame.java:3027)
[ ] at MMStudioPlugin$2.run(MMStudioPlugin.java:102)
[ ] at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:199)
[ ] at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:642)
[ ] at java.awt.EventQueue.access$000(EventQueue.java:85)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:603)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:601)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.awt.EventQueue.dispatchEvent(EventQueue.java:612)
[ ] at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269)
[ ] at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184)
[ ] at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161)
[ ] at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
2014-12-22T19:59:02.890113 tid5568 [dbg,Core] Waiting for device COM3...
2014-12-22T19:59:02.890113 tid5568 [dbg,Core] Finished waiting for device COM3
2014-12-22T19:59:02.890113 tid5568 [dbg,Core] Waiting for device Cobolt...
2014-12-22T19:59:02.890113 tid5568 [dbg,Core] Finished waiting for device Cobolt
2014-12-22T19:59:02.890113 tid5568 [dbg,Core] Waiting for device OrcaFlash...
2014-12-22T19:59:02.890113 tid5568 [dbg,Core] Finished waiting for device OrcaFlash
2014-12-22T19:59:02.890113 tid5568 [dbg,Core] Waiting for device Picard Twister...
2014-12-22T19:59:02.890113 tid5568 [dbg,Core] Finished waiting for device Picard Twister
2014-12-22T19:59:02.890113 tid5568 [dbg,Core] Waiting for device Picard Z Stage...
2014-12-22T19:59:02.890113 tid5568 [dbg,Core] Finished waiting for device Picard Z Stage
2014-12-22T19:59:02.890113 tid5568 [dbg,Core] Waiting for device Picard XY Stage...
2014-12-22T19:59:02.890113 tid5568 [dbg,Core] Finished waiting for device Picard XY Stage
2014-12-22T19:59:02.890113 tid5568 [dbg,Core] Will unload all devices
2014-12-22T19:59:02.890113 tid5568 [dbg,dev:COM3] SetCommand -> l0\r
2014-12-22T19:59:02.898114 tid5568 [dbg,dev:COM3] GetAnswer # retries = 8
2014-12-22T19:59:02.898114 tid5568 [dbg,dev:COM3] GetAnswer <- \nOK\r
2014-12-22T19:59:03.098125 tid5568 [IFO,Core] Did unload all devices
2014-12-22T19:59:03.098125 tid5568 [IFO,Core] System reset
2014-12-22T19:59:03.098125 tid5568 [IFO,Core] Core session ended
-------------- next part --------------
2014-12-22T19:51:13.573615 tid6272 [IFO,LogManager] Enabled primary log file C:\Users\User\Desktop\OpenSPIM.app\CoreLogs\CoreLog20141222T195113_pid5688.txt
2014-12-22T19:51:13.573615 tid6272 [IFO,LogManager] Switching primary log level from info to trace
2014-12-22T19:51:13.589215 tid6272 [IFO,LogManager] Switched primary log level from info to trace
2014-12-22T19:51:13.589215 tid6272 [IFO,App] User: User
2014-12-22T19:51:13.589215 tid6272 [IFO,App] Host: OpenSPIM01
2014-12-22T19:51:13.589215 tid6272 [IFO,App] MM Studio version: 1.4.x dev
2014-12-22T19:51:13.589215 tid6272 [IFO,App] MMCore version 4.0.4
2014-12-22T19:51:13.589215 tid6272 [IFO,App] Device API version 60, Module API version 10
2014-12-22T19:51:13.589215 tid6272 [IFO,App] Operating System: Windows 7 (x86) 6.1
2014-12-22T19:51:13.589215 tid6272 [IFO,App] JVM: Java HotSpot(TM) Client VM, version 1.6.0_24, 32-bit
2014-12-22T19:51:13.589215 tid6272 [dbg,Core] Will set circular buffer size to 25 MB
2014-12-22T19:51:13.589215 tid6272 [dbg,Core] Did set circular buffer size to 25 MB
2014-12-22T19:51:13.885615 tid6404 [IFO,App] Attempting to install plugin spim.SPIMAcquisition
2014-12-22T19:51:13.994815 tid6404 [IFO,App] Attempting to install autofocus plugin Autofocus
2014-12-22T19:51:13.994815 tid6404 [IFO,App] Attempting to install autofocus plugin AutofocusDuo
2014-12-22T19:51:13.994815 tid6404 [IFO,App] Attempting to install autofocus plugin AutofocusTB
2014-12-22T19:51:13.994815 tid6404 [IFO,App] Attempting to install autofocus plugin OughtaFocus
2014-12-22T19:51:16.147619 tid6272 [dbg,Core] Will set property: Core-Initialize = 0
2014-12-22T19:51:16.147619 tid6272 [dbg,Core] Will unload all devices
2014-12-22T19:51:16.147619 tid6272 [IFO,Core] Did unload all devices
2014-12-22T19:51:16.147619 tid6272 [dbg,App] Notification for Device: Core Property: Initialize changed to value: 0
2014-12-22T19:51:16.163219 tid6272 [dbg,Core] Did set property: Core-Initialize = 0
2014-12-22T19:51:16.163219 tid6272 [dbg,Core] Will load device COM3 from SerialManager
2014-12-22T19:51:16.210019 tid6272 [IFO,Core] Did load device COM3 from SerialManager; label = COM3
2014-12-22T19:51:16.210019 tid6272 [dbg,Core] Will load device Cobolt from Cobolt
2014-12-22T19:51:16.272419 tid6272 [IFO,Core] Did load device Cobolt from Cobolt; label = Cobolt
2014-12-22T19:51:16.272419 tid6272 [dbg,Core] Will load device HamamatsuHam_DCAM from HamamatsuHam
2014-12-22T19:51:16.740420 tid6272 [IFO,Core] Did load device HamamatsuHam_DCAM from HamamatsuHam; label = OrcaFlash
2014-12-22T19:51:16.740420 tid6272 [dbg,Core] Will load device Picard Twister from PicardStage
2014-12-22T19:51:16.849620 tid6272 [IFO,Core] Did load device Picard Twister from PicardStage; label = Picard Twister
2014-12-22T19:51:16.849620 tid6272 [dbg,Core] Will load device Picard Z Stage from PicardStage
2014-12-22T19:51:16.849620 tid6272 [IFO,Core] Did load device Picard Z Stage from PicardStage; label = Picard Z Stage
2014-12-22T19:51:16.849620 tid6272 [dbg,Core] Will load device Picard XY Stage from PicardStage
2014-12-22T19:51:16.849620 tid6272 [IFO,Core] Did load device Picard XY Stage from PicardStage; label = Picard XY Stage
2014-12-22T19:51:16.849620 tid6272 [dbg,Core] Will set property: Cobolt-Max Power = 60.0000
2014-12-22T19:51:16.849620 tid6272 [dbg,Core] Did set property: Cobolt-Max Power = 60.0000
2014-12-22T19:51:16.849620 tid6272 [dbg,Core] Will set property: Cobolt-Port = COM3
2014-12-22T19:51:16.849620 tid6272 [dbg,Core] Did set property: Cobolt-Port = COM3
2014-12-22T19:51:16.849620 tid6272 [dbg,Core] Will set property: Picard Twister-Serial Number = 37
2014-12-22T19:51:16.849620 tid6272 [dbg,Core] Did set property: Picard Twister-Serial Number = 37
2014-12-22T19:51:16.849620 tid6272 [dbg,Core] Will set property: Picard Z Stage-Serial Number = 140
2014-12-22T19:51:16.865221 tid6272 [dbg,Core] Did set property: Picard Z Stage-Serial Number = 140
2014-12-22T19:51:16.865221 tid6272 [dbg,Core] Will set property: Picard XY Stage-Serial Number (X) = 139
2014-12-22T19:51:16.880821 tid6272 [dbg,Core] Did set property: Picard XY Stage-Serial Number (X) = 139
2014-12-22T19:51:16.880821 tid6272 [dbg,Core] Will set property: Picard XY Stage-Serial Number (Y) = 141
2014-12-22T19:51:16.943221 tid6272 [dbg,Core] Did set property: Picard XY Stage-Serial Number (Y) = 141
2014-12-22T19:51:16.943221 tid6272 [dbg,Core] Will set property: Picard XY Stage-X-Max = 8000
2014-12-22T19:51:16.943221 tid6272 [dbg,Core] Did set property: Picard XY Stage-X-Max = 8000
2014-12-22T19:51:16.943221 tid6272 [dbg,Core] Will set property: Picard XY Stage-X-Min = 1
2014-12-22T19:51:16.943221 tid6272 [dbg,Core] Did set property: Picard XY Stage-X-Min = 1
2014-12-22T19:51:16.943221 tid6272 [dbg,Core] Will set property: Picard XY Stage-Y-Max = 8000
2014-12-22T19:51:16.943221 tid6272 [dbg,Core] Did set property: Picard XY Stage-Y-Max = 8000
2014-12-22T19:51:16.943221 tid6272 [dbg,Core] Will set property: Picard XY Stage-Y-Min = 1
2014-12-22T19:51:16.943221 tid6272 [dbg,Core] Did set property: Picard XY Stage-Y-Min = 1
2014-12-22T19:51:16.943221 tid6272 [dbg,Core] Will set property: COM3-AnswerTimeout = 500.0000
2014-12-22T19:51:16.943221 tid6272 [dbg,Core] Did set property: COM3-AnswerTimeout = 500.0000
2014-12-22T19:51:16.943221 tid6272 [dbg,Core] Will set property: COM3-BaudRate = 115200
2014-12-22T19:51:16.943221 tid6272 [dbg,Core] Did set property: COM3-BaudRate = 115200
2014-12-22T19:51:16.943221 tid6272 [dbg,Core] Will set property: COM3-DelayBetweenCharsMs = 0.0000
2014-12-22T19:51:16.943221 tid6272 [dbg,Core] Did set property: COM3-DelayBetweenCharsMs = 0.0000
2014-12-22T19:51:16.943221 tid6272 [dbg,Core] Will set property: COM3-Handshaking = Off
2014-12-22T19:51:16.943221 tid6272 [dbg,Core] Did set property: COM3-Handshaking = Off
2014-12-22T19:51:16.943221 tid6272 [dbg,Core] Will set property: COM3-Parity = None
2014-12-22T19:51:16.943221 tid6272 [dbg,Core] Did set property: COM3-Parity = None
2014-12-22T19:51:16.943221 tid6272 [dbg,Core] Will set property: COM3-StopBits = 1
2014-12-22T19:51:16.943221 tid6272 [dbg,Core] Did set property: COM3-StopBits = 1
2014-12-22T19:51:16.943221 tid6272 [dbg,Core] Will set property: COM3-Verbose = 1
2014-12-22T19:51:16.943221 tid6272 [dbg,Core] Did set property: COM3-Verbose = 1
2014-12-22T19:51:16.943221 tid6272 [dbg,Core] Will set property: Core-Initialize = 1
2014-12-22T19:51:16.943221 tid6272 [IFO,Core] Will initialize 6 devices
2014-12-22T19:51:16.943221 tid6272 [IFO,Core] Will initialize device COM3
2014-12-22T19:51:16.943221 tid6272 [dbg,dev:COM3] Attempting to set baud of COM3 to 115200
2014-12-22T19:51:16.958821 tid6272 [dbg,dev:COM3] Attempting to set flow of COM3 to none
2014-12-22T19:51:16.974421 tid6272 [dbg,dev:COM3] Attempting to set parity of COM3 to none
2014-12-22T19:51:16.974421 tid6272 [dbg,dev:COM3] Attempting to set stopBits of COM3 to 1
2014-12-22T19:51:16.990021 tid6272 [IFO,Core] Did initialize device COM3
2014-12-22T19:51:16.990021 tid6272 [IFO,Core] Will initialize device Cobolt
2014-12-22T19:51:17.005621 tid6272 [dbg,dev:COM3] SetCommand -> i? \r
2014-12-22T19:51:17.036821 tid6272 [dbg,dev:COM3] GetAnswer # retries = 3
2014-12-22T19:51:17.036821 tid6272 [dbg,dev:COM3] GetAnswer <- 0.0\r
2014-12-22T19:51:17.036821 tid6272 [dbg,dev:COM3] SetCommand -> f? \r
2014-12-22T19:51:17.099221 tid6272 [dbg,dev:COM3] GetAnswer # retries = 5
2014-12-22T19:51:17.099221 tid6272 [dbg,dev:COM3] GetAnswer <- \n0\r
2014-12-22T19:51:17.099221 tid6272 [dbg,dev:COM3] SetCommand -> hrs? \r
2014-12-22T19:51:17.146021 tid6272 [dbg,dev:COM3] GetAnswer # retries = 4
2014-12-22T19:51:17.146021 tid6272 [dbg,dev:COM3] GetAnswer <- \n114.13\r
2014-12-22T19:51:17.146021 tid6272 [dbg,dev:COM3] SetCommand -> ilk? \r
2014-12-22T19:51:17.177221 tid6272 [dbg,dev:COM3] GetAnswer # retries = 3
2014-12-22T19:51:17.177221 tid6272 [dbg,dev:COM3] GetAnswer <- \n0\r
2014-12-22T19:51:17.177221 tid6272 [dbg,dev:COM3] SetCommand -> l? \r
2014-12-22T19:51:17.224021 tid6272 [dbg,dev:COM3] GetAnswer # retries = 4
2014-12-22T19:51:17.224021 tid6272 [dbg,dev:COM3] GetAnswer <- \n0\r
2014-12-22T19:51:17.224021 tid6272 [dbg,dev:COM3] SetCommand -> l? \r
2014-12-22T19:51:17.286421 tid6272 [dbg,dev:COM3] GetAnswer # retries = 5
2014-12-22T19:51:17.286421 tid6272 [dbg,dev:COM3] GetAnswer <- \n0\r
2014-12-22T19:51:17.286421 tid6272 [dbg,dev:COM3] SetCommand -> pa? \r
2014-12-22T19:51:17.333221 tid6272 [dbg,dev:COM3] GetAnswer # retries = 4
2014-12-22T19:51:17.333221 tid6272 [dbg,dev:COM3] GetAnswer <- \n-0.0000\r
2014-12-22T19:51:17.333221 tid6272 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-22T19:51:17.364421 tid6272 [dbg,dev:COM3] GetAnswer # retries = 3
2014-12-22T19:51:17.364421 tid6272 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-22T19:51:17.364421 tid6272 [dbg,dev:COM3] SetCommand -> sn? \r
2014-12-22T19:51:17.426821 tid6272 [dbg,dev:COM3] GetAnswer # retries = 5
2014-12-22T19:51:17.426821 tid6272 [dbg,dev:COM3] GetAnswer <- \n488006152\r
2014-12-22T19:51:17.426821 tid6272 [dbg,dev:COM3] SetCommand -> ver? \r
2014-12-22T19:51:17.458022 tid6272 [dbg,dev:COM3] GetAnswer # retries = 3
2014-12-22T19:51:17.458022 tid6272 [dbg,dev:COM3] GetAnswer <- \n6.65\r
2014-12-22T19:51:17.458022 tid6272 [dbg,dev:COM3] SetCommand -> l0\r
2014-12-22T19:51:17.520422 tid6272 [dbg,dev:COM3] GetAnswer # retries = 5
2014-12-22T19:51:17.520422 tid6272 [dbg,dev:COM3] GetAnswer <- \nOK\r
2014-12-22T19:51:17.520422 tid6272 [IFO,Core] Did initialize device Cobolt
2014-12-22T19:51:17.520422 tid6272 [IFO,Core] Default shutter set to Cobolt
2014-12-22T19:51:17.520422 tid6272 [IFO,Core] Will initialize device OrcaFlash
2014-12-22T19:51:20.815972 tid6272 [ERR,Core] Error occurred in device OrcaFlash: Error in device OrcaFlash: Error code 40 (28 hex).
2014-12-22T19:51:20.826973 tid6272 [dbg,Core] Will set property: Core-Camera = OrcaFlash
2014-12-22T19:51:20.826973 tid6272 [dbg,Core] Will set property: Core-Shutter = Cobolt
2014-12-22T19:51:20.826973 tid6272 [dbg,Core] Will set property: Core-Focus = Picard Z Stage
2014-12-22T19:51:20.826973 tid6272 [dbg,Core] Will set property: Core-AutoShutter = 1
2014-12-22T19:51:20.826973 tid6272 [dbg,Core] Autoshutter turned on
2014-12-22T19:51:20.826973 tid6272 [dbg,App] Notification for Device: Core Property: AutoShutter changed to value: 1
2014-12-22T19:51:20.826973 tid6272 [dbg,Core] Did set property: Core-AutoShutter = 1
2014-12-22T19:51:20.840974 tid6272 [IFO,App]
[ ] java.lang.Exception: Line 38: Property,Core,Initialize,1
[ ] Error in device OrcaFlash: Error code 40 (28 hex).
[ ]
[ ] Line 43: Property,Core,Camera,OrcaFlash
[ ] Cannot set Core property Camera to invalid value "OrcaFlash"
[ ]
[ ] Line 44: Property,Core,Shutter,Cobolt
[ ] Cannot set Core property Shutter to invalid value "Cobolt"
[ ]
[ ] Line 45: Property,Core,Focus,Picard Z Stage
[ ] Cannot set Core property Focus to invalid value "Picard Z Stage"
[ ]
[ ] in Thread[AWT-EventQueue-0,6,main]
[ ] at mmcorej.MMCoreJJNI.CMMCore_loadSystemConfiguration(Native Method)
[ ] at mmcorej.CMMCore.loadSystemConfiguration(CMMCore.java:313)
[ ] at org.micromanager.MMStudioMainFrame.loadSystemConfiguration(MMStudioMainFrame.java:3151)
[ ] at org.micromanager.MMStudioMainFrame.access$2200(MMStudioMainFrame.java:157)
[ ] at org.micromanager.MMStudioMainFrame$1.windowOpened(MMStudioMainFrame.java:560)
[ ] at java.awt.AWTEventMulticaster.windowOpened(AWTEventMulticaster.java:322)
[ ] at java.awt.Window.processWindowEvent(Window.java:1862)
[ ] at javax.swing.JFrame.processWindowEvent(JFrame.java:274)
[ ] at java.awt.Window.processEvent(Window.java:1823)
[ ] at java.awt.Component.dispatchEventImpl(Component.java:4652)
[ ] at java.awt.Container.dispatchEventImpl(Container.java:2099)
[ ] at java.awt.Window.dispatchEventImpl(Window.java:2478)
[ ] at java.awt.Component.dispatchEvent(Component.java:4482)
[ ] at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:644)
[ ] at java.awt.EventQueue.access$000(EventQueue.java:85)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:603)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:601)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:617)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:615)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.awt.EventQueue.dispatchEvent(EventQueue.java:614)
[ ] at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269)
[ ] at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184)
[ ] at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161)
[ ] at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
2014-12-22T19:51:22.819087 tid6272 [dbg,dev:COM3] SetCommand -> l? \r
2014-12-22T19:51:22.830087 tid6272 [dbg,dev:COM3] GetAnswer # retries = 12
2014-12-22T19:51:22.830087 tid6272 [dbg,dev:COM3] GetAnswer <- \n0\r
2014-12-22T19:51:22.830087 tid6272 [ERR,Core] Error occurred in device CMMCore::getShutterOpen(): Error in device Cobolt: Invalid state (position) requested.
2014-12-22T19:51:22.830087 tid6272 [IFO,App]
[ ] java.lang.Exception: Error in device Cobolt: Invalid state (position) requested. in Thread[AWT-EventQueue-0,6,main]
[ ] at mmcorej.MMCoreJJNI.CMMCore_getShutterOpen__SWIG_0(Native Method)
[ ] at mmcorej.CMMCore.getShutterOpen(CMMCore.java:885)
[ ] at org.micromanager.MMStudioMainFrame.updateGUI(MMStudioMainFrame.java:2812)
[ ] at org.micromanager.MMStudioMainFrame.updateGUI(MMStudioMainFrame.java:2782)
[ ] at org.micromanager.MMStudioMainFrame.initializeGUI(MMStudioMainFrame.java:2701)
[ ] at org.micromanager.MMStudioMainFrame.loadSystemConfiguration(MMStudioMainFrame.java:3165)
[ ] at org.micromanager.MMStudioMainFrame.access$2200(MMStudioMainFrame.java:157)
[ ] at org.micromanager.MMStudioMainFrame$1.windowOpened(MMStudioMainFrame.java:560)
[ ] at java.awt.AWTEventMulticaster.windowOpened(AWTEventMulticaster.java:322)
[ ] at java.awt.Window.processWindowEvent(Window.java:1862)
[ ] at javax.swing.JFrame.processWindowEvent(JFrame.java:274)
[ ] at java.awt.Window.processEvent(Window.java:1823)
[ ] at java.awt.Component.dispatchEventImpl(Component.java:4652)
[ ] at java.awt.Container.dispatchEventImpl(Container.java:2099)
[ ] at java.awt.Window.dispatchEventImpl(Window.java:2478)
[ ] at java.awt.Component.dispatchEvent(Component.java:4482)
[ ] at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:644)
[ ] at java.awt.EventQueue.access$000(EventQueue.java:85)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:603)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:601)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:617)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:615)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.awt.EventQueue.dispatchEvent(EventQueue.java:614)
[ ] at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269)
[ ] at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184)
[ ] at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161)
[ ] at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
2014-12-22T19:51:22.833087 tid6272 [IFO,App] Startup script file (C:\Users\User\Desktop\OpenSPIM.app\MMStartup.bsh) not present.
2014-12-22T19:51:22.931093 tid6272 [IFO,App]
[ ] java.lang.Exception: Cannot set Core property Shutter to invalid value "Cobolt" in Thread[AWT-EventQueue-0,6,main]
[ ] at mmcorej.MMCoreJJNI.CMMCore_setChannelGroup(Native Method)
[ ] at mmcorej.CMMCore.setChannelGroup(CMMCore.java:665)
[ ] at org.micromanager.acquisition.AcquisitionWrapperEngine.setChannelGroup(AcquisitionWrapperEngine.java:690)
[ ] at org.micromanager.AcqControlDlg.loadAcqSettings(AcqControlDlg.java:1803)
[ ] at org.micromanager.AcqControlDlg.<init>(AcqControlDlg.java:1612)
[ ] at org.micromanager.MMStudioMainFrame$1.windowOpened(MMStudioMainFrame.java:569)
[ ] at java.awt.AWTEventMulticaster.windowOpened(AWTEventMulticaster.java:322)
[ ] at java.awt.Window.processWindowEvent(Window.java:1862)
[ ] at javax.swing.JFrame.processWindowEvent(JFrame.java:274)
[ ] at java.awt.Window.processEvent(Window.java:1823)
[ ] at java.awt.Component.dispatchEventImpl(Component.java:4652)
[ ] at java.awt.Container.dispatchEventImpl(Container.java:2099)
[ ] at java.awt.Window.dispatchEventImpl(Window.java:2478)
[ ] at java.awt.Component.dispatchEvent(Component.java:4482)
[ ] at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:644)
[ ] at java.awt.EventQueue.access$000(EventQueue.java:85)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:603)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:601)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:617)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:615)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.awt.EventQueue.dispatchEvent(EventQueue.java:614)
[ ] at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269)
[ ] at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184)
[ ] at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161)
[ ] at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
2014-12-22T19:51:23.206109 tid6272 [IFO,App]
[ ] java.lang.Exception: Cannot set Core property Shutter to invalid value "Cobolt" in Thread[AWT-EventQueue-0,6,main]
[ ] at mmcorej.MMCoreJJNI.CMMCore_setChannelGroup(Native Method)
[ ] at mmcorej.CMMCore.setChannelGroup(CMMCore.java:665)
[ ] at org.micromanager.acquisition.AcquisitionWrapperEngine.setChannelGroup(AcquisitionWrapperEngine.java:690)
[ ] at org.micromanager.AcqControlDlg$17.actionPerformed(AcqControlDlg.java:1238)
[ ] at javax.swing.JComboBox.fireActionEvent(JComboBox.java:1240)
[ ] at javax.swing.JComboBox.setSelectedItem(JComboBox.java:567)
[ ] at org.micromanager.AcqControlDlg.updateGUIContents(AcqControlDlg.java:2268)
[ ] at org.micromanager.AcqControlDlg.<init>(AcqControlDlg.java:1618)
[ ] at org.micromanager.MMStudioMainFrame$1.windowOpened(MMStudioMainFrame.java:569)
[ ] at java.awt.AWTEventMulticaster.windowOpened(AWTEventMulticaster.java:322)
[ ] at java.awt.Window.processWindowEvent(Window.java:1862)
[ ] at javax.swing.JFrame.processWindowEvent(JFrame.java:274)
[ ] at java.awt.Window.processEvent(Window.java:1823)
[ ] at java.awt.Component.dispatchEventImpl(Component.java:4652)
[ ] at java.awt.Container.dispatchEventImpl(Container.java:2099)
[ ] at java.awt.Window.dispatchEventImpl(Window.java:2478)
[ ] at java.awt.Component.dispatchEvent(Component.java:4482)
[ ] at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:644)
[ ] at java.awt.EventQueue.access$000(EventQueue.java:85)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:603)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:601)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:617)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:615)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.awt.EventQueue.dispatchEvent(EventQueue.java:614)
[ ] at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269)
[ ] at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184)
[ ] at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161)
[ ] at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
2014-12-22T19:51:23.213109 tid6272 [IFO,App]
[ ] java.lang.Exception: Cannot set Core property Shutter to invalid value "Cobolt" in Thread[AWT-EventQueue-0,6,main]
[ ] at mmcorej.MMCoreJJNI.CMMCore_setChannelGroup(Native Method)
[ ] at mmcorej.CMMCore.setChannelGroup(CMMCore.java:665)
[ ] at org.micromanager.acquisition.AcquisitionWrapperEngine.setChannelGroup(AcquisitionWrapperEngine.java:690)
[ ] at org.micromanager.AcqControlDlg$17.actionPerformed(AcqControlDlg.java:1238)
[ ] at javax.swing.JComboBox.fireActionEvent(JComboBox.java:1240)
[ ] at javax.swing.JComboBox.setSelectedItem(JComboBox.java:567)
[ ] at org.micromanager.AcqControlDlg.updateGUIContents(AcqControlDlg.java:2268)
[ ] at org.micromanager.AcqControlDlg.applySettings(AcqControlDlg.java:2427)
[ ] at org.micromanager.AcqControlDlg.<init>(AcqControlDlg.java:1621)
[ ] at org.micromanager.MMStudioMainFrame$1.windowOpened(MMStudioMainFrame.java:569)
[ ] at java.awt.AWTEventMulticaster.windowOpened(AWTEventMulticaster.java:322)
[ ] at java.awt.Window.processWindowEvent(Window.java:1862)
[ ] at javax.swing.JFrame.processWindowEvent(JFrame.java:274)
[ ] at java.awt.Window.processEvent(Window.java:1823)
[ ] at java.awt.Component.dispatchEventImpl(Component.java:4652)
[ ] at java.awt.Container.dispatchEventImpl(Container.java:2099)
[ ] at java.awt.Window.dispatchEventImpl(Window.java:2478)
[ ] at java.awt.Component.dispatchEvent(Component.java:4482)
[ ] at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:644)
[ ] at java.awt.EventQueue.access$000(EventQueue.java:85)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:603)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:601)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:617)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:615)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.awt.EventQueue.dispatchEvent(EventQueue.java:614)
[ ] at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269)
[ ] at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184)
[ ] at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161)
[ ] at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
2014-12-22T19:51:53.591847 tid6272 [IFO,App]
[ ] java.lang.Exception: Cannot set Core property Shutter to invalid value "Cobolt" in Thread[AWT-EventQueue-0,6,main]
[ ] at mmcorej.MMCoreJJNI.CMMCore_setChannelGroup(Native Method)
[ ] at mmcorej.CMMCore.setChannelGroup(CMMCore.java:665)
[ ] at org.micromanager.acquisition.AcquisitionWrapperEngine.setChannelGroup(AcquisitionWrapperEngine.java:690)
[ ] at org.micromanager.AcqControlDlg$17.actionPerformed(AcqControlDlg.java:1238)
[ ] at javax.swing.JComboBox.fireActionEvent(JComboBox.java:1240)
[ ] at javax.swing.JComboBox.setSelectedItem(JComboBox.java:567)
[ ] at org.micromanager.AcqControlDlg.updateGUIContents(AcqControlDlg.java:2268)
[ ] at org.micromanager.AcqControlDlg.applySettings(AcqControlDlg.java:2427)
[ ] at org.micromanager.AcqControlDlg.saveAcqSettings(AcqControlDlg.java:1865)
[ ] at org.micromanager.AcqControlDlg.close(AcqControlDlg.java:1710)
[ ] at org.micromanager.MMStudioMainFrame.cleanupOnClose(MMStudioMainFrame.java:2928)
[ ] at org.micromanager.MMStudioMainFrame.closeSequence(MMStudioMainFrame.java:3027)
[ ] at MMStudioPlugin$2.run(MMStudioPlugin.java:102)
[ ] at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:199)
[ ] at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:642)
[ ] at java.awt.EventQueue.access$000(EventQueue.java:85)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:603)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:601)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.awt.EventQueue.dispatchEvent(EventQueue.java:612)
[ ] at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269)
[ ] at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184)
[ ] at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161)
[ ] at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
2014-12-22T19:51:55.860977 tid6272 [dbg,Core] Waiting for device COM3...
2014-12-22T19:51:55.860977 tid6272 [dbg,Core] Finished waiting for device COM3
2014-12-22T19:51:55.860977 tid6272 [dbg,Core] Waiting for device Cobolt...
2014-12-22T19:51:55.860977 tid6272 [dbg,Core] Finished waiting for device Cobolt
2014-12-22T19:51:55.860977 tid6272 [dbg,Core] Waiting for device OrcaFlash...
2014-12-22T19:51:55.860977 tid6272 [dbg,Core] Finished waiting for device OrcaFlash
2014-12-22T19:51:55.860977 tid6272 [dbg,Core] Waiting for device Picard Twister...
2014-12-22T19:51:55.860977 tid6272 [dbg,Core] Finished waiting for device Picard Twister
2014-12-22T19:51:55.860977 tid6272 [dbg,Core] Waiting for device Picard Z Stage...
2014-12-22T19:51:55.860977 tid6272 [dbg,Core] Finished waiting for device Picard Z Stage
2014-12-22T19:51:55.860977 tid6272 [dbg,Core] Waiting for device Picard XY Stage...
2014-12-22T19:51:55.860977 tid6272 [dbg,Core] Finished waiting for device Picard XY Stage
2014-12-22T19:51:55.860977 tid6272 [dbg,Core] Will unload all devices
2014-12-22T19:51:55.860977 tid6272 [dbg,dev:COM3] SetCommand -> l0\r
2014-12-22T19:51:55.866977 tid6272 [dbg,dev:COM3] GetAnswer # retries = 7
2014-12-22T19:51:55.866977 tid6272 [dbg,dev:COM3] GetAnswer <- \nOK\r
2014-12-22T19:51:56.066988 tid6272 [IFO,Core] Did unload all devices
2014-12-22T19:51:56.066988 tid6272 [IFO,Core] System reset
2014-12-22T19:51:56.066988 tid6272 [IFO,Core] Core session ended
-------------- next part --------------
2014-12-22T19:33:49.952247 tid2852 [IFO,LogManager] Enabled primary log file C:\Users\User\Desktop\OpenSPIM.app\CoreLogs\CoreLog20141222T193349_pid3816.txt
2014-12-22T19:33:49.952247 tid2852 [IFO,LogManager] Switching primary log level from info to trace
2014-12-22T19:33:49.967847 tid2852 [IFO,LogManager] Switched primary log level from info to trace
2014-12-22T19:33:49.967847 tid2852 [IFO,App] User: User
2014-12-22T19:33:49.967847 tid2852 [IFO,App] Host: OpenSPIM01
2014-12-22T19:33:49.967847 tid2852 [IFO,App] MM Studio version: 1.4.x dev
2014-12-22T19:33:49.967847 tid2852 [IFO,App] MMCore version 4.0.4
2014-12-22T19:33:49.967847 tid2852 [IFO,App] Device API version 60, Module API version 10
2014-12-22T19:33:49.967847 tid2852 [IFO,App] Operating System: Windows 7 (x86) 6.1
2014-12-22T19:33:49.967847 tid2852 [IFO,App] JVM: Java HotSpot(TM) Client VM, version 1.6.0_24, 32-bit
2014-12-22T19:33:49.967847 tid2852 [dbg,Core] Will set circular buffer size to 25 MB
2014-12-22T19:33:49.967847 tid2852 [dbg,Core] Did set circular buffer size to 25 MB
2014-12-22T19:33:50.108247 tid6108 [IFO,App] Attempting to install plugin spim.SPIMAcquisition
2014-12-22T19:33:50.123847 tid6108 [IFO,App] Attempting to install autofocus plugin Autofocus
2014-12-22T19:33:50.123847 tid6108 [IFO,App] Attempting to install autofocus plugin AutofocusDuo
2014-12-22T19:33:50.123847 tid6108 [IFO,App] Attempting to install autofocus plugin AutofocusTB
2014-12-22T19:33:50.123847 tid6108 [IFO,App] Attempting to install autofocus plugin OughtaFocus
2014-12-22T19:33:52.432651 tid2852 [dbg,Core] Will set property: Core-Initialize = 0
2014-12-22T19:33:52.432651 tid2852 [dbg,Core] Will unload all devices
2014-12-22T19:33:52.432651 tid2852 [IFO,Core] Did unload all devices
2014-12-22T19:33:52.432651 tid2852 [dbg,App] Notification for Device: Core Property: Initialize changed to value: 0
2014-12-22T19:33:52.432651 tid2852 [dbg,Core] Did set property: Core-Initialize = 0
2014-12-22T19:33:52.432651 tid2852 [dbg,Core] Will load device COM3 from SerialManager
2014-12-22T19:33:52.432651 tid2852 [IFO,Core] Did load device COM3 from SerialManager; label = COM3
2014-12-22T19:33:52.432651 tid2852 [dbg,Core] Will load device Cobolt from Cobolt
2014-12-22T19:33:52.432651 tid2852 [IFO,Core] Did load device Cobolt from Cobolt; label = Cobolt
2014-12-22T19:33:52.432651 tid2852 [dbg,Core] Will load device HamamatsuHam_DCAM from HamamatsuHam
2014-12-22T19:33:52.432651 tid2852 [IFO,Core] Did load device HamamatsuHam_DCAM from HamamatsuHam; label = OrcaFlash
2014-12-22T19:33:52.432651 tid2852 [dbg,Core] Will load device Picard Twister from PicardStage
2014-12-22T19:33:52.448251 tid2852 [IFO,Core] Did load device Picard Twister from PicardStage; label = Picard Twister
2014-12-22T19:33:52.448251 tid2852 [dbg,Core] Will load device Picard Z Stage from PicardStage
2014-12-22T19:33:52.448251 tid2852 [IFO,Core] Did load device Picard Z Stage from PicardStage; label = Picard Z Stage
2014-12-22T19:33:52.448251 tid2852 [dbg,Core] Will load device Picard XY Stage from PicardStage
2014-12-22T19:33:52.448251 tid2852 [IFO,Core] Did load device Picard XY Stage from PicardStage; label = Picard XY Stage
2014-12-22T19:33:52.448251 tid2852 [dbg,Core] Will set property: Cobolt-Max Power = 60.0000
2014-12-22T19:33:52.448251 tid2852 [dbg,Core] Did set property: Cobolt-Max Power = 60.0000
2014-12-22T19:33:52.448251 tid2852 [dbg,Core] Will set property: Cobolt-Port = COM3
2014-12-22T19:33:52.448251 tid2852 [dbg,Core] Did set property: Cobolt-Port = COM3
2014-12-22T19:33:52.448251 tid2852 [dbg,Core] Will set property: Picard Twister-Serial Number = 37
2014-12-22T19:33:52.463851 tid2852 [dbg,Core] Did set property: Picard Twister-Serial Number = 37
2014-12-22T19:33:52.463851 tid2852 [dbg,Core] Will set property: Picard Z Stage-Serial Number = 140
2014-12-22T19:33:52.479451 tid2852 [dbg,Core] Did set property: Picard Z Stage-Serial Number = 140
2014-12-22T19:33:52.479451 tid2852 [dbg,Core] Will set property: Picard XY Stage-Serial Number (X) = 139
2014-12-22T19:33:52.495051 tid2852 [dbg,Core] Did set property: Picard XY Stage-Serial Number (X) = 139
2014-12-22T19:33:52.495051 tid2852 [dbg,Core] Will set property: Picard XY Stage-Serial Number (Y) = 141
2014-12-22T19:33:52.557451 tid2852 [dbg,Core] Did set property: Picard XY Stage-Serial Number (Y) = 141
2014-12-22T19:33:52.557451 tid2852 [dbg,Core] Will set property: Picard XY Stage-X-Max = 8000
2014-12-22T19:33:52.557451 tid2852 [dbg,Core] Did set property: Picard XY Stage-X-Max = 8000
2014-12-22T19:33:52.557451 tid2852 [dbg,Core] Will set property: Picard XY Stage-X-Min = 1
2014-12-22T19:33:52.557451 tid2852 [dbg,Core] Did set property: Picard XY Stage-X-Min = 1
2014-12-22T19:33:52.557451 tid2852 [dbg,Core] Will set property: Picard XY Stage-Y-Max = 8000
2014-12-22T19:33:52.557451 tid2852 [dbg,Core] Did set property: Picard XY Stage-Y-Max = 8000
2014-12-22T19:33:52.557451 tid2852 [dbg,Core] Will set property: Picard XY Stage-Y-Min = 1
2014-12-22T19:33:52.557451 tid2852 [dbg,Core] Did set property: Picard XY Stage-Y-Min = 1
2014-12-22T19:33:52.557451 tid2852 [dbg,Core] Will set property: COM3-AnswerTimeout = 500.0000
2014-12-22T19:33:52.557451 tid2852 [dbg,Core] Did set property: COM3-AnswerTimeout = 500.0000
2014-12-22T19:33:52.557451 tid2852 [dbg,Core] Will set property: COM3-BaudRate = 115200
2014-12-22T19:33:52.557451 tid2852 [dbg,Core] Did set property: COM3-BaudRate = 115200
2014-12-22T19:33:52.557451 tid2852 [dbg,Core] Will set property: COM3-DelayBetweenCharsMs = 0.0000
2014-12-22T19:33:52.557451 tid2852 [dbg,Core] Did set property: COM3-DelayBetweenCharsMs = 0.0000
2014-12-22T19:33:52.557451 tid2852 [dbg,Core] Will set property: COM3-Handshaking = Off
2014-12-22T19:33:52.557451 tid2852 [dbg,Core] Did set property: COM3-Handshaking = Off
2014-12-22T19:33:52.557451 tid2852 [dbg,Core] Will set property: COM3-Parity = None
2014-12-22T19:33:52.557451 tid2852 [dbg,Core] Did set property: COM3-Parity = None
2014-12-22T19:33:52.557451 tid2852 [dbg,Core] Will set property: COM3-StopBits = 1
2014-12-22T19:33:52.557451 tid2852 [dbg,Core] Did set property: COM3-StopBits = 1
2014-12-22T19:33:52.557451 tid2852 [dbg,Core] Will set property: COM3-Verbose = 1
2014-12-22T19:33:52.557451 tid2852 [dbg,Core] Did set property: COM3-Verbose = 1
2014-12-22T19:33:52.557451 tid2852 [dbg,Core] Will set property: Core-Initialize = 1
2014-12-22T19:33:52.557451 tid2852 [IFO,Core] Will initialize 6 devices
2014-12-22T19:33:52.557451 tid2852 [IFO,Core] Will initialize device COM3
2014-12-22T19:33:52.557451 tid2852 [dbg,dev:COM3] Attempting to set baud of COM3 to 115200
2014-12-22T19:33:52.573051 tid2852 [dbg,dev:COM3] Attempting to set flow of COM3 to none
2014-12-22T19:33:52.573051 tid2852 [dbg,dev:COM3] Attempting to set parity of COM3 to none
2014-12-22T19:33:52.588651 tid2852 [dbg,dev:COM3] Attempting to set stopBits of COM3 to 1
2014-12-22T19:33:52.604251 tid2852 [IFO,Core] Did initialize device COM3
2014-12-22T19:33:52.604251 tid2852 [IFO,Core] Will initialize device Cobolt
2014-12-22T19:33:52.604251 tid2852 [dbg,dev:COM3] SetCommand -> i? \r
2014-12-22T19:33:52.666652 tid2852 [dbg,dev:COM3] GetAnswer # retries = 5
2014-12-22T19:33:52.666652 tid2852 [dbg,dev:COM3] GetAnswer <- 0.0\r
2014-12-22T19:33:52.666652 tid2852 [dbg,dev:COM3] SetCommand -> f? \r
2014-12-22T19:33:52.713452 tid2852 [dbg,dev:COM3] GetAnswer # retries = 4
2014-12-22T19:33:52.713452 tid2852 [dbg,dev:COM3] GetAnswer <- \n0\r
2014-12-22T19:33:52.713452 tid2852 [dbg,dev:COM3] SetCommand -> hrs? \r
2014-12-22T19:33:52.760252 tid2852 [dbg,dev:COM3] GetAnswer # retries = 4
2014-12-22T19:33:52.760252 tid2852 [dbg,dev:COM3] GetAnswer <- \n114.13\r
2014-12-22T19:33:52.760252 tid2852 [dbg,dev:COM3] SetCommand -> ilk? \r
2014-12-22T19:33:52.791452 tid2852 [dbg,dev:COM3] GetAnswer # retries = 3
2014-12-22T19:33:52.791452 tid2852 [dbg,dev:COM3] GetAnswer <- \n0\r
2014-12-22T19:33:52.791452 tid2852 [dbg,dev:COM3] SetCommand -> l? \r
2014-12-22T19:33:52.838252 tid2852 [dbg,dev:COM3] GetAnswer # retries = 4
2014-12-22T19:33:52.838252 tid2852 [dbg,dev:COM3] GetAnswer <- \n0\r
2014-12-22T19:33:52.838252 tid2852 [dbg,dev:COM3] SetCommand -> l? \r
2014-12-22T19:33:52.900652 tid2852 [dbg,dev:COM3] GetAnswer # retries = 5
2014-12-22T19:33:52.900652 tid2852 [dbg,dev:COM3] GetAnswer <- \n0\r
2014-12-22T19:33:52.900652 tid2852 [dbg,dev:COM3] SetCommand -> pa? \r
2014-12-22T19:33:52.947452 tid2852 [dbg,dev:COM3] GetAnswer # retries = 4
2014-12-22T19:33:52.947452 tid2852 [dbg,dev:COM3] GetAnswer <- \n-0.0000\r
2014-12-22T19:33:52.947452 tid2852 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-22T19:33:52.994252 tid2852 [dbg,dev:COM3] GetAnswer # retries = 4
2014-12-22T19:33:52.994252 tid2852 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-22T19:33:52.994252 tid2852 [dbg,dev:COM3] SetCommand -> sn? \r
2014-12-22T19:33:53.041052 tid2852 [dbg,dev:COM3] GetAnswer # retries = 4
2014-12-22T19:33:53.041052 tid2852 [dbg,dev:COM3] GetAnswer <- \n488006152\r
2014-12-22T19:33:53.041052 tid2852 [dbg,dev:COM3] SetCommand -> ver? \r
2014-12-22T19:33:53.087852 tid2852 [dbg,dev:COM3] GetAnswer # retries = 4
2014-12-22T19:33:53.087852 tid2852 [dbg,dev:COM3] GetAnswer <- \n6.65\r
2014-12-22T19:33:53.087852 tid2852 [dbg,dev:COM3] SetCommand -> l0\r
2014-12-22T19:33:53.134652 tid2852 [dbg,dev:COM3] GetAnswer # retries = 4
2014-12-22T19:33:53.134652 tid2852 [dbg,dev:COM3] GetAnswer <- \nOK\r
2014-12-22T19:33:53.134652 tid2852 [IFO,Core] Did initialize device Cobolt
2014-12-22T19:33:53.134652 tid2852 [IFO,Core] Default shutter set to Cobolt
2014-12-22T19:33:53.134652 tid2852 [IFO,Core] Will initialize device OrcaFlash
2014-12-22T19:33:54.094906 tid2852 [ERR,Core] Error occurred in device OrcaFlash: Error in device OrcaFlash: Error code 40 (28 hex).
2014-12-22T19:33:54.094906 tid2852 [dbg,Core] Will set property: Core-Camera = OrcaFlash
2014-12-22T19:33:54.094906 tid2852 [dbg,Core] Will set property: Core-Shutter = Cobolt
2014-12-22T19:33:54.095906 tid2852 [dbg,Core] Will set property: Core-Focus = Picard Z Stage
2014-12-22T19:33:54.095906 tid2852 [dbg,Core] Will set property: Core-AutoShutter = 1
2014-12-22T19:33:54.095906 tid2852 [dbg,Core] Autoshutter turned on
2014-12-22T19:33:54.095906 tid2852 [dbg,App] Notification for Device: Core Property: AutoShutter changed to value: 1
2014-12-22T19:33:54.095906 tid2852 [dbg,Core] Did set property: Core-AutoShutter = 1
2014-12-22T19:33:54.096906 tid2852 [IFO,App]
[ ] java.lang.Exception: Line 38: Property,Core,Initialize,1
[ ] Error in device OrcaFlash: Error code 40 (28 hex).
[ ]
[ ] Line 43: Property,Core,Camera,OrcaFlash
[ ] Cannot set Core property Camera to invalid value "OrcaFlash"
[ ]
[ ] Line 44: Property,Core,Shutter,Cobolt
[ ] Cannot set Core property Shutter to invalid value "Cobolt"
[ ]
[ ] Line 45: Property,Core,Focus,Picard Z Stage
[ ] Cannot set Core property Focus to invalid value "Picard Z Stage"
[ ]
[ ] in Thread[AWT-EventQueue-0,6,main]
[ ] at mmcorej.MMCoreJJNI.CMMCore_loadSystemConfiguration(Native Method)
[ ] at mmcorej.CMMCore.loadSystemConfiguration(CMMCore.java:313)
[ ] at org.micromanager.MMStudioMainFrame.loadSystemConfiguration(MMStudioMainFrame.java:3151)
[ ] at org.micromanager.MMStudioMainFrame.access$2200(MMStudioMainFrame.java:157)
[ ] at org.micromanager.MMStudioMainFrame$1.windowOpened(MMStudioMainFrame.java:560)
[ ] at java.awt.AWTEventMulticaster.windowOpened(AWTEventMulticaster.java:322)
[ ] at java.awt.Window.processWindowEvent(Window.java:1862)
[ ] at javax.swing.JFrame.processWindowEvent(JFrame.java:274)
[ ] at java.awt.Window.processEvent(Window.java:1823)
[ ] at java.awt.Component.dispatchEventImpl(Component.java:4652)
[ ] at java.awt.Container.dispatchEventImpl(Container.java:2099)
[ ] at java.awt.Window.dispatchEventImpl(Window.java:2478)
[ ] at java.awt.Component.dispatchEvent(Component.java:4482)
[ ] at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:644)
[ ] at java.awt.EventQueue.access$000(EventQueue.java:85)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:603)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:601)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:617)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:615)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.awt.EventQueue.dispatchEvent(EventQueue.java:614)
[ ] at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269)
[ ] at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184)
[ ] at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161)
[ ] at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
2014-12-22T19:34:11.794918 tid2852 [dbg,dev:COM3] SetCommand -> l? \r
2014-12-22T19:34:11.805919 tid2852 [dbg,dev:COM3] GetAnswer # retries = 12
2014-12-22T19:34:11.805919 tid2852 [dbg,dev:COM3] GetAnswer <- \n0\r
2014-12-22T19:34:11.805919 tid2852 [ERR,Core] Error occurred in device CMMCore::getShutterOpen(): Error in device Cobolt: Invalid state (position) requested.
2014-12-22T19:34:11.805919 tid2852 [IFO,App]
[ ] java.lang.Exception: Error in device Cobolt: Invalid state (position) requested. in Thread[AWT-EventQueue-0,6,main]
[ ] at mmcorej.MMCoreJJNI.CMMCore_getShutterOpen__SWIG_0(Native Method)
[ ] at mmcorej.CMMCore.getShutterOpen(CMMCore.java:885)
[ ] at org.micromanager.MMStudioMainFrame.updateGUI(MMStudioMainFrame.java:2812)
[ ] at org.micromanager.MMStudioMainFrame.updateGUI(MMStudioMainFrame.java:2782)
[ ] at org.micromanager.MMStudioMainFrame.initializeGUI(MMStudioMainFrame.java:2701)
[ ] at org.micromanager.MMStudioMainFrame.loadSystemConfiguration(MMStudioMainFrame.java:3165)
[ ] at org.micromanager.MMStudioMainFrame.access$2200(MMStudioMainFrame.java:157)
[ ] at org.micromanager.MMStudioMainFrame$1.windowOpened(MMStudioMainFrame.java:560)
[ ] at java.awt.AWTEventMulticaster.windowOpened(AWTEventMulticaster.java:322)
[ ] at java.awt.Window.processWindowEvent(Window.java:1862)
[ ] at javax.swing.JFrame.processWindowEvent(JFrame.java:274)
[ ] at java.awt.Window.processEvent(Window.java:1823)
[ ] at java.awt.Component.dispatchEventImpl(Component.java:4652)
[ ] at java.awt.Container.dispatchEventImpl(Container.java:2099)
[ ] at java.awt.Window.dispatchEventImpl(Window.java:2478)
[ ] at java.awt.Component.dispatchEvent(Component.java:4482)
[ ] at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:644)
[ ] at java.awt.EventQueue.access$000(EventQueue.java:85)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:603)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:601)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:617)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:615)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.awt.EventQueue.dispatchEvent(EventQueue.java:614)
[ ] at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269)
[ ] at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184)
[ ] at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161)
[ ] at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
2014-12-22T19:34:11.808919 tid2852 [IFO,App] Startup script file (C:\Users\User\Desktop\OpenSPIM.app\MMStartup.bsh) not present.
2014-12-22T19:34:11.855921 tid2852 [IFO,App]
[ ] java.lang.Exception: Cannot set Core property Shutter to invalid value "Cobolt" in Thread[AWT-EventQueue-0,6,main]
[ ] at mmcorej.MMCoreJJNI.CMMCore_setChannelGroup(Native Method)
[ ] at mmcorej.CMMCore.setChannelGroup(CMMCore.java:665)
[ ] at org.micromanager.acquisition.AcquisitionWrapperEngine.setChannelGroup(AcquisitionWrapperEngine.java:690)
[ ] at org.micromanager.AcqControlDlg.loadAcqSettings(AcqControlDlg.java:1803)
[ ] at org.micromanager.AcqControlDlg.<init>(AcqControlDlg.java:1612)
[ ] at org.micromanager.MMStudioMainFrame$1.windowOpened(MMStudioMainFrame.java:569)
[ ] at java.awt.AWTEventMulticaster.windowOpened(AWTEventMulticaster.java:322)
[ ] at java.awt.Window.processWindowEvent(Window.java:1862)
[ ] at javax.swing.JFrame.processWindowEvent(JFrame.java:274)
[ ] at java.awt.Window.processEvent(Window.java:1823)
[ ] at java.awt.Component.dispatchEventImpl(Component.java:4652)
[ ] at java.awt.Container.dispatchEventImpl(Container.java:2099)
[ ] at java.awt.Window.dispatchEventImpl(Window.java:2478)
[ ] at java.awt.Component.dispatchEvent(Component.java:4482)
[ ] at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:644)
[ ] at java.awt.EventQueue.access$000(EventQueue.java:85)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:603)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:601)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:617)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:615)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.awt.EventQueue.dispatchEvent(EventQueue.java:614)
[ ] at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269)
[ ] at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184)
[ ] at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161)
[ ] at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
2014-12-22T19:34:11.904924 tid2852 [IFO,App]
[ ] java.lang.Exception: Cannot set Core property Shutter to invalid value "Cobolt" in Thread[AWT-EventQueue-0,6,main]
[ ] at mmcorej.MMCoreJJNI.CMMCore_setChannelGroup(Native Method)
[ ] at mmcorej.CMMCore.setChannelGroup(CMMCore.java:665)
[ ] at org.micromanager.acquisition.AcquisitionWrapperEngine.setChannelGroup(AcquisitionWrapperEngine.java:690)
[ ] at org.micromanager.AcqControlDlg$17.actionPerformed(AcqControlDlg.java:1238)
[ ] at javax.swing.JComboBox.fireActionEvent(JComboBox.java:1240)
[ ] at javax.swing.JComboBox.setSelectedItem(JComboBox.java:567)
[ ] at org.micromanager.AcqControlDlg.updateGUIContents(AcqControlDlg.java:2268)
[ ] at org.micromanager.AcqControlDlg.<init>(AcqControlDlg.java:1618)
[ ] at org.micromanager.MMStudioMainFrame$1.windowOpened(MMStudioMainFrame.java:569)
[ ] at java.awt.AWTEventMulticaster.windowOpened(AWTEventMulticaster.java:322)
[ ] at java.awt.Window.processWindowEvent(Window.java:1862)
[ ] at javax.swing.JFrame.processWindowEvent(JFrame.java:274)
[ ] at java.awt.Window.processEvent(Window.java:1823)
[ ] at java.awt.Component.dispatchEventImpl(Component.java:4652)
[ ] at java.awt.Container.dispatchEventImpl(Container.java:2099)
[ ] at java.awt.Window.dispatchEventImpl(Window.java:2478)
[ ] at java.awt.Component.dispatchEvent(Component.java:4482)
[ ] at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:644)
[ ] at java.awt.EventQueue.access$000(EventQueue.java:85)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:603)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:601)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:617)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:615)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.awt.EventQueue.dispatchEvent(EventQueue.java:614)
[ ] at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269)
[ ] at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184)
[ ] at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161)
[ ] at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
2014-12-22T19:34:11.915925 tid2852 [IFO,App]
[ ] java.lang.Exception: Cannot set Core property Shutter to invalid value "Cobolt" in Thread[AWT-EventQueue-0,6,main]
[ ] at mmcorej.MMCoreJJNI.CMMCore_setChannelGroup(Native Method)
[ ] at mmcorej.CMMCore.setChannelGroup(CMMCore.java:665)
[ ] at org.micromanager.acquisition.AcquisitionWrapperEngine.setChannelGroup(AcquisitionWrapperEngine.java:690)
[ ] at org.micromanager.AcqControlDlg$17.actionPerformed(AcqControlDlg.java:1238)
[ ] at javax.swing.JComboBox.fireActionEvent(JComboBox.java:1240)
[ ] at javax.swing.JComboBox.setSelectedItem(JComboBox.java:567)
[ ] at org.micromanager.AcqControlDlg.updateGUIContents(AcqControlDlg.java:2268)
[ ] at org.micromanager.AcqControlDlg.applySettings(AcqControlDlg.java:2427)
[ ] at org.micromanager.AcqControlDlg.<init>(AcqControlDlg.java:1621)
[ ] at org.micromanager.MMStudioMainFrame$1.windowOpened(MMStudioMainFrame.java:569)
[ ] at java.awt.AWTEventMulticaster.windowOpened(AWTEventMulticaster.java:322)
[ ] at java.awt.Window.processWindowEvent(Window.java:1862)
[ ] at javax.swing.JFrame.processWindowEvent(JFrame.java:274)
[ ] at java.awt.Window.processEvent(Window.java:1823)
[ ] at java.awt.Component.dispatchEventImpl(Component.java:4652)
[ ] at java.awt.Container.dispatchEventImpl(Container.java:2099)
[ ] at java.awt.Window.dispatchEventImpl(Window.java:2478)
[ ] at java.awt.Component.dispatchEvent(Component.java:4482)
[ ] at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:644)
[ ] at java.awt.EventQueue.access$000(EventQueue.java:85)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:603)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:601)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:617)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:615)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.awt.EventQueue.dispatchEvent(EventQueue.java:614)
[ ] at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269)
[ ] at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184)
[ ] at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161)
[ ] at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
2014-12-22T19:44:03.658771 tid2852 [IFO,App] [UI] JButton "Easy mode" clicked in UpdaterFrame.
2014-12-22T19:44:06.392927 tid2852 [IFO,App] [UI] ViewOptions clicked in UpdaterFrame.
2014-12-22T19:44:09.190087 tid2852 [IFO,App] [UI] "ComboBox.list" set to "View files of the 'OpenSPIM' site" in UpdaterFrame.
-------------- next part --------------
2014-12-22T19:31:59.363297 tid592 [IFO,LogManager] Enabled primary log file C:\Users\User\Desktop\OpenSPIM.app\CoreLogs\CoreLog20141222T193159_pid6784.txt
2014-12-22T19:31:59.363297 tid592 [IFO,LogManager] Switching primary log level from info to trace
2014-12-22T19:31:59.378897 tid592 [IFO,LogManager] Switched primary log level from info to trace
2014-12-22T19:31:59.378897 tid592 [IFO,App] User: User
2014-12-22T19:31:59.378897 tid592 [IFO,App] Host: OpenSPIM01
2014-12-22T19:31:59.378897 tid592 [IFO,App] MM Studio version: 1.4.x dev
2014-12-22T19:31:59.378897 tid592 [IFO,App] MMCore version 4.0.4
2014-12-22T19:31:59.378897 tid592 [IFO,App] Device API version 60, Module API version 10
2014-12-22T19:31:59.378897 tid592 [IFO,App] Operating System: Windows 7 (x86) 6.1
2014-12-22T19:31:59.378897 tid592 [IFO,App] JVM: Java HotSpot(TM) Client VM, version 1.6.0_24, 32-bit
2014-12-22T19:31:59.378897 tid592 [dbg,Core] Will set circular buffer size to 25 MB
2014-12-22T19:31:59.378897 tid592 [dbg,Core] Did set circular buffer size to 25 MB
2014-12-22T19:31:59.519297 tid5884 [IFO,App] Attempting to install plugin spim.SPIMAcquisition
2014-12-22T19:31:59.534897 tid5884 [IFO,App] Attempting to install autofocus plugin Autofocus
2014-12-22T19:31:59.534897 tid5884 [IFO,App] Attempting to install autofocus plugin AutofocusDuo
2014-12-22T19:31:59.534897 tid5884 [IFO,App] Attempting to install autofocus plugin AutofocusTB
2014-12-22T19:31:59.534897 tid5884 [IFO,App] Attempting to install autofocus plugin OughtaFocus
2014-12-22T19:32:02.545702 tid592 [dbg,Core] Will set property: Core-Initialize = 0
2014-12-22T19:32:02.545702 tid592 [dbg,Core] Will unload all devices
2014-12-22T19:32:02.545702 tid592 [IFO,Core] Did unload all devices
2014-12-22T19:32:02.545702 tid592 [dbg,App] Notification for Device: Core Property: Initialize changed to value: 0
2014-12-22T19:32:02.545702 tid592 [dbg,Core] Did set property: Core-Initialize = 0
2014-12-22T19:32:02.545702 tid592 [dbg,Core] Will load device COM3 from SerialManager
2014-12-22T19:32:02.545702 tid592 [IFO,Core] Did load device COM3 from SerialManager; label = COM3
2014-12-22T19:32:02.545702 tid592 [dbg,Core] Will load device Cobolt from Cobolt
2014-12-22T19:32:02.545702 tid592 [IFO,Core] Did load device Cobolt from Cobolt; label = Cobolt
2014-12-22T19:32:02.545702 tid592 [dbg,Core] Will load device HamamatsuHam_DCAM from HamamatsuHam
2014-12-22T19:32:02.545702 tid592 [IFO,Core] Did load device HamamatsuHam_DCAM from HamamatsuHam; label = OrcaFlash
2014-12-22T19:32:02.545702 tid592 [dbg,Core] Will load device Picard Twister from PicardStage
2014-12-22T19:32:02.561302 tid592 [IFO,Core] Did load device Picard Twister from PicardStage; label = Picard Twister
2014-12-22T19:32:02.561302 tid592 [dbg,Core] Will load device Picard Z Stage from PicardStage
2014-12-22T19:32:02.561302 tid592 [IFO,Core] Did load device Picard Z Stage from PicardStage; label = Picard Z Stage
2014-12-22T19:32:02.561302 tid592 [dbg,Core] Will load device Picard XY Stage from PicardStage
2014-12-22T19:32:02.561302 tid592 [IFO,Core] Did load device Picard XY Stage from PicardStage; label = Picard XY Stage
2014-12-22T19:32:02.561302 tid592 [dbg,Core] Will set property: Cobolt-Max Power = 60.0000
2014-12-22T19:32:02.561302 tid592 [dbg,Core] Did set property: Cobolt-Max Power = 60.0000
2014-12-22T19:32:02.561302 tid592 [dbg,Core] Will set property: Cobolt-Port = COM3
2014-12-22T19:32:02.561302 tid592 [dbg,Core] Did set property: Cobolt-Port = COM3
2014-12-22T19:32:02.561302 tid592 [dbg,Core] Will set property: Picard Twister-Serial Number = 37
2014-12-22T19:32:02.576902 tid592 [dbg,Core] Did set property: Picard Twister-Serial Number = 37
2014-12-22T19:32:02.576902 tid592 [dbg,Core] Will set property: Picard Z Stage-Serial Number = 140
2014-12-22T19:32:02.592502 tid592 [dbg,Core] Did set property: Picard Z Stage-Serial Number = 140
2014-12-22T19:32:02.592502 tid592 [dbg,Core] Will set property: Picard XY Stage-Serial Number (X) = 139
2014-12-22T19:32:02.608103 tid592 [dbg,Core] Did set property: Picard XY Stage-Serial Number (X) = 139
2014-12-22T19:32:02.608103 tid592 [dbg,Core] Will set property: Picard XY Stage-Serial Number (Y) = 141
2014-12-22T19:32:02.670503 tid592 [dbg,Core] Did set property: Picard XY Stage-Serial Number (Y) = 141
2014-12-22T19:32:02.670503 tid592 [dbg,Core] Will set property: Picard XY Stage-X-Max = 8000
2014-12-22T19:32:02.670503 tid592 [dbg,Core] Did set property: Picard XY Stage-X-Max = 8000
2014-12-22T19:32:02.670503 tid592 [dbg,Core] Will set property: Picard XY Stage-X-Min = 1
2014-12-22T19:32:02.670503 tid592 [dbg,Core] Did set property: Picard XY Stage-X-Min = 1
2014-12-22T19:32:02.670503 tid592 [dbg,Core] Will set property: Picard XY Stage-Y-Max = 8000
2014-12-22T19:32:02.670503 tid592 [dbg,Core] Did set property: Picard XY Stage-Y-Max = 8000
2014-12-22T19:32:02.670503 tid592 [dbg,Core] Will set property: Picard XY Stage-Y-Min = 1
2014-12-22T19:32:02.670503 tid592 [dbg,Core] Did set property: Picard XY Stage-Y-Min = 1
2014-12-22T19:32:02.670503 tid592 [dbg,Core] Will set property: COM3-AnswerTimeout = 500.0000
2014-12-22T19:32:02.670503 tid592 [dbg,Core] Did set property: COM3-AnswerTimeout = 500.0000
2014-12-22T19:32:02.670503 tid592 [dbg,Core] Will set property: COM3-BaudRate = 115200
2014-12-22T19:32:02.670503 tid592 [dbg,Core] Did set property: COM3-BaudRate = 115200
2014-12-22T19:32:02.670503 tid592 [dbg,Core] Will set property: COM3-DelayBetweenCharsMs = 0.0000
2014-12-22T19:32:02.670503 tid592 [dbg,Core] Did set property: COM3-DelayBetweenCharsMs = 0.0000
2014-12-22T19:32:02.670503 tid592 [dbg,Core] Will set property: COM3-Handshaking = Off
2014-12-22T19:32:02.670503 tid592 [dbg,Core] Did set property: COM3-Handshaking = Off
2014-12-22T19:32:02.670503 tid592 [dbg,Core] Will set property: COM3-Parity = None
2014-12-22T19:32:02.670503 tid592 [dbg,Core] Did set property: COM3-Parity = None
2014-12-22T19:32:02.670503 tid592 [dbg,Core] Will set property: COM3-StopBits = 1
2014-12-22T19:32:02.670503 tid592 [dbg,Core] Did set property: COM3-StopBits = 1
2014-12-22T19:32:02.670503 tid592 [dbg,Core] Will set property: COM3-Verbose = 1
2014-12-22T19:32:02.670503 tid592 [dbg,Core] Did set property: COM3-Verbose = 1
2014-12-22T19:32:02.670503 tid592 [dbg,Core] Will set property: Core-Initialize = 1
2014-12-22T19:32:02.670503 tid592 [IFO,Core] Will initialize 6 devices
2014-12-22T19:32:02.670503 tid592 [IFO,Core] Will initialize device COM3
2014-12-22T19:32:02.670503 tid592 [dbg,dev:COM3] Attempting to set baud of COM3 to 115200
2014-12-22T19:32:02.686103 tid592 [dbg,dev:COM3] Attempting to set flow of COM3 to none
2014-12-22T19:32:02.686103 tid592 [dbg,dev:COM3] Attempting to set parity of COM3 to none
2014-12-22T19:32:02.701703 tid592 [dbg,dev:COM3] Attempting to set stopBits of COM3 to 1
2014-12-22T19:32:02.717303 tid592 [IFO,Core] Did initialize device COM3
2014-12-22T19:32:02.717303 tid592 [IFO,Core] Will initialize device Cobolt
2014-12-22T19:32:02.717303 tid592 [dbg,dev:COM3] SetCommand -> i? \r
2014-12-22T19:32:02.779703 tid592 [dbg,dev:COM3] GetAnswer # retries = 5
2014-12-22T19:32:02.779703 tid592 [dbg,dev:COM3] GetAnswer <- 0.0\r
2014-12-22T19:32:02.779703 tid592 [dbg,dev:COM3] SetCommand -> f? \r
2014-12-22T19:32:02.826503 tid592 [dbg,dev:COM3] GetAnswer # retries = 4
2014-12-22T19:32:02.826503 tid592 [dbg,dev:COM3] GetAnswer <- \n0\r
2014-12-22T19:32:02.826503 tid592 [dbg,dev:COM3] SetCommand -> hrs? \r
2014-12-22T19:32:02.873303 tid592 [dbg,dev:COM3] GetAnswer # retries = 4
2014-12-22T19:32:02.873303 tid592 [dbg,dev:COM3] GetAnswer <- \n114.13\r
2014-12-22T19:32:02.873303 tid592 [dbg,dev:COM3] SetCommand -> ilk? \r
2014-12-22T19:32:02.920103 tid592 [dbg,dev:COM3] GetAnswer # retries = 4
2014-12-22T19:32:02.920103 tid592 [dbg,dev:COM3] GetAnswer <- \n0\r
2014-12-22T19:32:02.920103 tid592 [dbg,dev:COM3] SetCommand -> l? \r
2014-12-22T19:32:02.966903 tid592 [dbg,dev:COM3] GetAnswer # retries = 4
2014-12-22T19:32:02.966903 tid592 [dbg,dev:COM3] GetAnswer <- \n0\r
2014-12-22T19:32:02.966903 tid592 [dbg,dev:COM3] SetCommand -> l? \r
2014-12-22T19:32:03.013703 tid592 [dbg,dev:COM3] GetAnswer # retries = 4
2014-12-22T19:32:03.013703 tid592 [dbg,dev:COM3] GetAnswer <- \n0\r
2014-12-22T19:32:03.013703 tid592 [dbg,dev:COM3] SetCommand -> pa? \r
2014-12-22T19:32:03.060503 tid592 [dbg,dev:COM3] GetAnswer # retries = 4
2014-12-22T19:32:03.060503 tid592 [dbg,dev:COM3] GetAnswer <- \n-0.0000\r
2014-12-22T19:32:03.060503 tid592 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-22T19:32:03.107303 tid592 [dbg,dev:COM3] GetAnswer # retries = 4
2014-12-22T19:32:03.107303 tid592 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-22T19:32:03.107303 tid592 [dbg,dev:COM3] SetCommand -> sn? \r
2014-12-22T19:32:03.154103 tid592 [dbg,dev:COM3] GetAnswer # retries = 4
2014-12-22T19:32:03.154103 tid592 [dbg,dev:COM3] GetAnswer <- \n488006152\r
2014-12-22T19:32:03.154103 tid592 [dbg,dev:COM3] SetCommand -> ver? \r
2014-12-22T19:32:03.200904 tid592 [dbg,dev:COM3] GetAnswer # retries = 4
2014-12-22T19:32:03.200904 tid592 [dbg,dev:COM3] GetAnswer <- \n6.65\r
2014-12-22T19:32:03.200904 tid592 [dbg,dev:COM3] SetCommand -> l0\r
2014-12-22T19:32:03.247704 tid592 [dbg,dev:COM3] GetAnswer # retries = 4
2014-12-22T19:32:03.247704 tid592 [dbg,dev:COM3] GetAnswer <- \nOK\r
2014-12-22T19:32:03.247704 tid592 [IFO,Core] Did initialize device Cobolt
2014-12-22T19:32:03.247704 tid592 [IFO,Core] Default shutter set to Cobolt
2014-12-22T19:32:03.247704 tid592 [IFO,Core] Will initialize device OrcaFlash
2014-12-22T19:32:04.207957 tid592 [ERR,Core] Error occurred in device OrcaFlash: Error in device OrcaFlash: Error code 40 (28 hex).
2014-12-22T19:32:04.208957 tid592 [dbg,Core] Will set property: Core-Camera = OrcaFlash
2014-12-22T19:32:04.208957 tid592 [dbg,Core] Will set property: Core-Shutter = Cobolt
2014-12-22T19:32:04.208957 tid592 [dbg,Core] Will set property: Core-Focus = Picard Z Stage
2014-12-22T19:32:04.208957 tid592 [dbg,Core] Will set property: Core-AutoShutter = 1
2014-12-22T19:32:04.208957 tid592 [dbg,Core] Autoshutter turned on
2014-12-22T19:32:04.208957 tid592 [dbg,App] Notification for Device: Core Property: AutoShutter changed to value: 1
2014-12-22T19:32:04.208957 tid592 [dbg,Core] Did set property: Core-AutoShutter = 1
2014-12-22T19:32:04.209957 tid592 [IFO,App]
[ ] java.lang.Exception: Line 38: Property,Core,Initialize,1
[ ] Error in device OrcaFlash: Error code 40 (28 hex).
[ ]
[ ] Line 43: Property,Core,Camera,OrcaFlash
[ ] Cannot set Core property Camera to invalid value "OrcaFlash"
[ ]
[ ] Line 44: Property,Core,Shutter,Cobolt
[ ] Cannot set Core property Shutter to invalid value "Cobolt"
[ ]
[ ] Line 45: Property,Core,Focus,Picard Z Stage
[ ] Cannot set Core property Focus to invalid value "Picard Z Stage"
[ ]
[ ] in Thread[AWT-EventQueue-0,6,main]
[ ] at mmcorej.MMCoreJJNI.CMMCore_loadSystemConfiguration(Native Method)
[ ] at mmcorej.CMMCore.loadSystemConfiguration(CMMCore.java:313)
[ ] at org.micromanager.MMStudioMainFrame.loadSystemConfiguration(MMStudioMainFrame.java:3151)
[ ] at org.micromanager.MMStudioMainFrame.access$2200(MMStudioMainFrame.java:157)
[ ] at org.micromanager.MMStudioMainFrame$1.windowOpened(MMStudioMainFrame.java:560)
[ ] at java.awt.AWTEventMulticaster.windowOpened(AWTEventMulticaster.java:322)
[ ] at java.awt.Window.processWindowEvent(Window.java:1862)
[ ] at javax.swing.JFrame.processWindowEvent(JFrame.java:274)
[ ] at java.awt.Window.processEvent(Window.java:1823)
[ ] at java.awt.Component.dispatchEventImpl(Component.java:4652)
[ ] at java.awt.Container.dispatchEventImpl(Container.java:2099)
[ ] at java.awt.Window.dispatchEventImpl(Window.java:2478)
[ ] at java.awt.Component.dispatchEvent(Component.java:4482)
[ ] at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:644)
[ ] at java.awt.EventQueue.access$000(EventQueue.java:85)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:603)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:601)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:617)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:615)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.awt.EventQueue.dispatchEvent(EventQueue.java:614)
[ ] at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269)
[ ] at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184)
[ ] at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161)
[ ] at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
2014-12-22T19:32:05.918055 tid592 [dbg,dev:COM3] SetCommand -> l? \r
2014-12-22T19:32:05.930055 tid592 [dbg,dev:COM3] GetAnswer # retries = 13
2014-12-22T19:32:05.930055 tid592 [dbg,dev:COM3] GetAnswer <- \n0\r
2014-12-22T19:32:05.930055 tid592 [ERR,Core] Error occurred in device CMMCore::getShutterOpen(): Error in device Cobolt: Invalid state (position) requested.
2014-12-22T19:32:05.930055 tid592 [IFO,App]
[ ] java.lang.Exception: Error in device Cobolt: Invalid state (position) requested. in Thread[AWT-EventQueue-0,6,main]
[ ] at mmcorej.MMCoreJJNI.CMMCore_getShutterOpen__SWIG_0(Native Method)
[ ] at mmcorej.CMMCore.getShutterOpen(CMMCore.java:885)
[ ] at org.micromanager.MMStudioMainFrame.updateGUI(MMStudioMainFrame.java:2812)
[ ] at org.micromanager.MMStudioMainFrame.updateGUI(MMStudioMainFrame.java:2782)
[ ] at org.micromanager.MMStudioMainFrame.initializeGUI(MMStudioMainFrame.java:2701)
[ ] at org.micromanager.MMStudioMainFrame.loadSystemConfiguration(MMStudioMainFrame.java:3165)
[ ] at org.micromanager.MMStudioMainFrame.access$2200(MMStudioMainFrame.java:157)
[ ] at org.micromanager.MMStudioMainFrame$1.windowOpened(MMStudioMainFrame.java:560)
[ ] at java.awt.AWTEventMulticaster.windowOpened(AWTEventMulticaster.java:322)
[ ] at java.awt.Window.processWindowEvent(Window.java:1862)
[ ] at javax.swing.JFrame.processWindowEvent(JFrame.java:274)
[ ] at java.awt.Window.processEvent(Window.java:1823)
[ ] at java.awt.Component.dispatchEventImpl(Component.java:4652)
[ ] at java.awt.Container.dispatchEventImpl(Container.java:2099)
[ ] at java.awt.Window.dispatchEventImpl(Window.java:2478)
[ ] at java.awt.Component.dispatchEvent(Component.java:4482)
[ ] at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:644)
[ ] at java.awt.EventQueue.access$000(EventQueue.java:85)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:603)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:601)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:617)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:615)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.awt.EventQueue.dispatchEvent(EventQueue.java:614)
[ ] at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269)
[ ] at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184)
[ ] at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161)
[ ] at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
2014-12-22T19:32:05.933055 tid592 [IFO,App] Startup script file (C:\Users\User\Desktop\OpenSPIM.app\MMStartup.bsh) not present.
2014-12-22T19:32:05.985058 tid592 [IFO,App]
[ ] java.lang.Exception: Cannot set Core property Shutter to invalid value "Cobolt" in Thread[AWT-EventQueue-0,6,main]
[ ] at mmcorej.MMCoreJJNI.CMMCore_setChannelGroup(Native Method)
[ ] at mmcorej.CMMCore.setChannelGroup(CMMCore.java:665)
[ ] at org.micromanager.acquisition.AcquisitionWrapperEngine.setChannelGroup(AcquisitionWrapperEngine.java:690)
[ ] at org.micromanager.AcqControlDlg.loadAcqSettings(AcqControlDlg.java:1803)
[ ] at org.micromanager.AcqControlDlg.<init>(AcqControlDlg.java:1612)
[ ] at org.micromanager.MMStudioMainFrame$1.windowOpened(MMStudioMainFrame.java:569)
[ ] at java.awt.AWTEventMulticaster.windowOpened(AWTEventMulticaster.java:322)
[ ] at java.awt.Window.processWindowEvent(Window.java:1862)
[ ] at javax.swing.JFrame.processWindowEvent(JFrame.java:274)
[ ] at java.awt.Window.processEvent(Window.java:1823)
[ ] at java.awt.Component.dispatchEventImpl(Component.java:4652)
[ ] at java.awt.Container.dispatchEventImpl(Container.java:2099)
[ ] at java.awt.Window.dispatchEventImpl(Window.java:2478)
[ ] at java.awt.Component.dispatchEvent(Component.java:4482)
[ ] at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:644)
[ ] at java.awt.EventQueue.access$000(EventQueue.java:85)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:603)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:601)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:617)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:615)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.awt.EventQueue.dispatchEvent(EventQueue.java:614)
[ ] at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269)
[ ] at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184)
[ ] at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161)
[ ] at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
2014-12-22T19:32:06.034061 tid592 [IFO,App]
[ ] java.lang.Exception: Cannot set Core property Shutter to invalid value "Cobolt" in Thread[AWT-EventQueue-0,6,main]
[ ] at mmcorej.MMCoreJJNI.CMMCore_setChannelGroup(Native Method)
[ ] at mmcorej.CMMCore.setChannelGroup(CMMCore.java:665)
[ ] at org.micromanager.acquisition.AcquisitionWrapperEngine.setChannelGroup(AcquisitionWrapperEngine.java:690)
[ ] at org.micromanager.AcqControlDlg$17.actionPerformed(AcqControlDlg.java:1238)
[ ] at javax.swing.JComboBox.fireActionEvent(JComboBox.java:1240)
[ ] at javax.swing.JComboBox.setSelectedItem(JComboBox.java:567)
[ ] at org.micromanager.AcqControlDlg.updateGUIContents(AcqControlDlg.java:2268)
[ ] at org.micromanager.AcqControlDlg.<init>(AcqControlDlg.java:1618)
[ ] at org.micromanager.MMStudioMainFrame$1.windowOpened(MMStudioMainFrame.java:569)
[ ] at java.awt.AWTEventMulticaster.windowOpened(AWTEventMulticaster.java:322)
[ ] at java.awt.Window.processWindowEvent(Window.java:1862)
[ ] at javax.swing.JFrame.processWindowEvent(JFrame.java:274)
[ ] at java.awt.Window.processEvent(Window.java:1823)
[ ] at java.awt.Component.dispatchEventImpl(Component.java:4652)
[ ] at java.awt.Container.dispatchEventImpl(Container.java:2099)
[ ] at java.awt.Window.dispatchEventImpl(Window.java:2478)
[ ] at java.awt.Component.dispatchEvent(Component.java:4482)
[ ] at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:644)
[ ] at java.awt.EventQueue.access$000(EventQueue.java:85)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:603)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:601)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:617)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:615)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.awt.EventQueue.dispatchEvent(EventQueue.java:614)
[ ] at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269)
[ ] at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184)
[ ] at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161)
[ ] at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
2014-12-22T19:32:06.039062 tid592 [IFO,App]
[ ] java.lang.Exception: Cannot set Core property Shutter to invalid value "Cobolt" in Thread[AWT-EventQueue-0,6,main]
[ ] at mmcorej.MMCoreJJNI.CMMCore_setChannelGroup(Native Method)
[ ] at mmcorej.CMMCore.setChannelGroup(CMMCore.java:665)
[ ] at org.micromanager.acquisition.AcquisitionWrapperEngine.setChannelGroup(AcquisitionWrapperEngine.java:690)
[ ] at org.micromanager.AcqControlDlg$17.actionPerformed(AcqControlDlg.java:1238)
[ ] at javax.swing.JComboBox.fireActionEvent(JComboBox.java:1240)
[ ] at javax.swing.JComboBox.setSelectedItem(JComboBox.java:567)
[ ] at org.micromanager.AcqControlDlg.updateGUIContents(AcqControlDlg.java:2268)
[ ] at org.micromanager.AcqControlDlg.applySettings(AcqControlDlg.java:2427)
[ ] at org.micromanager.AcqControlDlg.<init>(AcqControlDlg.java:1621)
[ ] at org.micromanager.MMStudioMainFrame$1.windowOpened(MMStudioMainFrame.java:569)
[ ] at java.awt.AWTEventMulticaster.windowOpened(AWTEventMulticaster.java:322)
[ ] at java.awt.Window.processWindowEvent(Window.java:1862)
[ ] at javax.swing.JFrame.processWindowEvent(JFrame.java:274)
[ ] at java.awt.Window.processEvent(Window.java:1823)
[ ] at java.awt.Component.dispatchEventImpl(Component.java:4652)
[ ] at java.awt.Container.dispatchEventImpl(Container.java:2099)
[ ] at java.awt.Window.dispatchEventImpl(Window.java:2478)
[ ] at java.awt.Component.dispatchEvent(Component.java:4482)
[ ] at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:644)
[ ] at java.awt.EventQueue.access$000(EventQueue.java:85)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:603)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:601)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:617)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:615)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.awt.EventQueue.dispatchEvent(EventQueue.java:614)
[ ] at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269)
[ ] at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184)
[ ] at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161)
[ ] at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
2014-12-22T19:32:29.642412 tid592 [dbg,dev:COM3] SetCommand -> l1\r
2014-12-22T19:32:29.667413 tid592 [dbg,dev:COM3] GetAnswer # retries = 26
2014-12-22T19:32:29.667413 tid592 [dbg,dev:COM3] GetAnswer <- \nOK\r
2014-12-22T19:32:29.667413 tid592 [IFO,App] [UI] JToggleButton "toggleShutterButton" toggled on in MMStudioMainFrame.
2014-12-22T19:32:30.472459 tid592 [dbg,dev:COM3] SetCommand -> l0\r
2014-12-22T19:32:30.476459 tid592 [dbg,dev:COM3] GetAnswer # retries = 4
2014-12-22T19:32:30.476459 tid592 [dbg,dev:COM3] GetAnswer <- \nOK\r
2014-12-22T19:32:30.476459 tid592 [IFO,App] [UI] JToggleButton "toggleShutterButton" toggled off in MMStudioMainFrame.
2014-12-22T19:32:32.337566 tid592 [IFO,App] [UI] JMenu "Plugins" clicked in MMStudioMainFrame.
2014-12-22T19:32:33.870653 tid592 [IFO,App] Plugin command: Acquire SPIM image
2014-12-22T19:32:35.566750 tid592 [dbg,Core] Pixel size config: preset Uncalibrated: added setting : Core-Initialize = 1
2014-12-22T19:32:35.566750 tid592 [dbg,Core] Pixel size config: preset Uncalibrated: set resolution to 1.00000 um/px
2014-12-22T19:32:35.566750 tid592 [IFO,Core] Will initialize 6 devices
2014-12-22T19:32:35.566750 tid592 [IFO,Core] Will initialize device COM3
2014-12-22T19:32:35.566750 tid592 [IFO,Core] Did initialize device COM3
2014-12-22T19:32:35.566750 tid592 [IFO,Core] Will initialize device Cobolt
2014-12-22T19:32:35.566750 tid592 [ERR,Core] Error occurred in device Cobolt: Error in device Cobolt: Duplicate property names are not allowed: .
2014-12-22T19:32:35.566750 tid592 [ERR,Core] Error occurred in device setPixelSizeConfig: Device error encountered.
2014-12-22T19:32:35.576751 tid592 [IFO,App] Couldn't define uncalibrated pixel size:
2014-12-22T19:32:35.576751 tid592 [IFO,App] java.lang.Exception: Error in device Cobolt: Duplicate property names are not allowed: .
[ ] at mmcorej.MMCoreJJNI.CMMCore_setPixelSizeConfig(Native Method)
[ ] at mmcorej.CMMCore.setPixelSizeConfig(CMMCore.java:777)
[ ] at spim.SPIMAcquisition.ensurePixelResolution(SPIMAcquisition.java:263)
[ ] at spim.SPIMAcquisition.show(SPIMAcquisition.java:220)
[ ] at org.micromanager.MMStudioMainFrame.displayPlugin(MMStudioMainFrame.java:2755)
[ ] at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:157)
[ ] at org.micromanager.MMStudioMainFrame$49.run(MMStudioMainFrame.java:2720)
[ ] at org.micromanager.utils.GUIUtils$3.actionPerformed(GUIUtils.java:303)
[ ] at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:1995)
[ ] at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2318)
[ ] at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:387)
[ ] at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:242)
[ ] at javax.swing.AbstractButton.doClick(AbstractButton.java:357)
[ ] at javax.swing.plaf.basic.BasicMenuItemUI.doClick(BasicMenuItemUI.java:809)
[ ] at javax.swing.plaf.basic.BasicMenuItemUI$Handler.mouseReleased(BasicMenuItemUI.java:850)
[ ] at java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:272)
[ ] at java.awt.Component.processMouseEvent(Component.java:6289)
[ ] at javax.swing.JComponent.processMouseEvent(JComponent.java:3267)
[ ] at java.awt.Component.processEvent(Component.java:6054)
[ ] at java.awt.Container.processEvent(Container.java:2041)
[ ] at java.awt.Component.dispatchEventImpl(Component.java:4652)
[ ] at java.awt.Container.dispatchEventImpl(Container.java:2099)
[ ] at java.awt.Component.dispatchEvent(Component.java:4482)
[ ] at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4577)
[ ] at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4238)
[ ] at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4168)
[ ] at java.awt.Container.dispatchEventImpl(Container.java:2085)
[ ] at java.awt.Window.dispatchEventImpl(Window.java:2478)
[ ] at java.awt.Component.dispatchEvent(Component.java:4482)
[ ] at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:644)
[ ] at java.awt.EventQueue.access$000(EventQueue.java:85)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:603)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:601)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:617)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:615)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.awt.EventQueue.dispatchEvent(EventQueue.java:614)
[ ] at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269)
[ ] at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184)
[ ] at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161)
[ ] at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
2014-12-22T19:32:35.577751 tid592 [IFO,App] Uncaught exception in AWT/Swing event dispatch thread:
2014-12-22T19:32:35.577751 tid592 [IFO,App] java.lang.IllegalArgumentException: makeStageSliderSafe given a non-Stage device
2014-12-22T19:32:35.577751 tid592 [IFO,App] at spim.SPIMAcquisition.makeStageSlider(SPIMAcquisition.java:1033)
2014-12-22T19:32:35.577751 tid592 [IFO,App] at spim.SPIMAcquisition.initUI(SPIMAcquisition.java:358)
2014-12-22T19:32:35.577751 tid592 [IFO,App] at spim.SPIMAcquisition.show(SPIMAcquisition.java:221)
2014-12-22T19:32:35.577751 tid592 [IFO,App] at org.micromanager.MMStudioMainFrame.displayPlugin(MMStudioMainFrame.java:2755)
2014-12-22T19:32:35.577751 tid592 [IFO,App] at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:157)
2014-12-22T19:32:35.577751 tid592 [IFO,App] at org.micromanager.MMStudioMainFrame$49.run(MMStudioMainFrame.java:2720)
2014-12-22T19:32:35.577751 tid592 [IFO,App] at org.micromanager.utils.GUIUtils$3.actionPerformed(GUIUtils.java:303)
2014-12-22T19:32:35.577751 tid592 [IFO,App] at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:1995)
2014-12-22T19:32:35.577751 tid592 [IFO,App] at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2318)
2014-12-22T19:32:35.577751 tid592 [IFO,App] at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:387)
2014-12-22T19:32:35.577751 tid592 [IFO,App] at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:242)
2014-12-22T19:32:35.577751 tid592 [IFO,App] at javax.swing.AbstractButton.doClick(AbstractButton.java:357)
2014-12-22T19:32:35.577751 tid592 [IFO,App] at javax.swing.plaf.basic.BasicMenuItemUI.doClick(BasicMenuItemUI.java:809)
2014-12-22T19:32:35.577751 tid592 [IFO,App] at javax.swing.plaf.basic.BasicMenuItemUI$Handler.mouseReleased(BasicMenuItemUI.java:850)
2014-12-22T19:32:35.577751 tid592 [IFO,App] at java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:272)
2014-12-22T19:32:35.577751 tid592 [IFO,App] at java.awt.Component.processMouseEvent(Component.java:6289)
2014-12-22T19:32:35.577751 tid592 [IFO,App] at javax.swing.JComponent.processMouseEvent(JComponent.java:3267)
2014-12-22T19:32:35.577751 tid592 [IFO,App] at java.awt.Component.processEvent(Component.java:6054)
2014-12-22T19:32:35.577751 tid592 [IFO,App] at java.awt.Container.processEvent(Container.java:2041)
2014-12-22T19:32:35.577751 tid592 [IFO,App] at java.awt.Component.dispatchEventImpl(Component.java:4652)
2014-12-22T19:32:35.577751 tid592 [IFO,App] at java.awt.Container.dispatchEventImpl(Container.java:2099)
2014-12-22T19:32:35.577751 tid592 [IFO,App] at java.awt.Component.dispatchEvent(Component.java:4482)
2014-12-22T19:32:35.577751 tid592 [IFO,App] at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4577)
2014-12-22T19:32:35.577751 tid592 [IFO,App] at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4238)
2014-12-22T19:32:35.577751 tid592 [IFO,App] at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4168)
2014-12-22T19:32:35.577751 tid592 [IFO,App] at java.awt.Container.dispatchEventImpl(Container.java:2085)
2014-12-22T19:32:35.577751 tid592 [IFO,App] at java.awt.Window.dispatchEventImpl(Window.java:2478)
2014-12-22T19:32:35.577751 tid592 [IFO,App] at java.awt.Component.dispatchEvent(Component.java:4482)
2014-12-22T19:32:35.577751 tid592 [IFO,App] at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:644)
2014-12-22T19:32:35.577751 tid592 [IFO,App] at java.awt.EventQueue.access$000(EventQueue.java:85)
2014-12-22T19:32:35.577751 tid592 [IFO,App] at java.awt.EventQueue$1.run(EventQueue.java:603)
2014-12-22T19:32:35.577751 tid592 [IFO,App] at java.awt.EventQueue$1.run(EventQueue.java:601)
2014-12-22T19:32:35.577751 tid592 [IFO,App] at java.security.AccessController.doPrivileged(Native Method)
2014-12-22T19:32:35.577751 tid592 [IFO,App] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
2014-12-22T19:32:35.577751 tid592 [IFO,App] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
2014-12-22T19:32:35.577751 tid592 [IFO,App] at java.awt.EventQueue$2.run(EventQueue.java:617)
2014-12-22T19:32:35.577751 tid592 [IFO,App] at java.awt.EventQueue$2.run(EventQueue.java:615)
2014-12-22T19:32:35.577751 tid592 [IFO,App] at java.security.AccessController.doPrivileged(Native Method)
2014-12-22T19:32:35.577751 tid592 [IFO,App] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
2014-12-22T19:32:35.577751 tid592 [IFO,App] at java.awt.EventQueue.dispatchEvent(EventQueue.java:614)
2014-12-22T19:32:35.577751 tid592 [IFO,App] at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269)
2014-12-22T19:32:35.577751 tid592 [IFO,App] at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184)
2014-12-22T19:32:35.577751 tid592 [IFO,App] at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174)
2014-12-22T19:32:35.577751 tid592 [IFO,App] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169)
2014-12-22T19:32:35.577751 tid592 [IFO,App] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161)
2014-12-22T19:32:35.577751 tid592 [IFO,App] at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
2014-12-22T19:32:37.229846 tid592 [IFO,App] Error: No camera configured
2014-12-22T19:32:42.871168 tid592 [dbg,Core] Will update system state cache
2014-12-22T19:32:42.871168 tid592 [dbg,dev:COM3] SetCommand -> i? \r
2014-12-22T19:32:42.876169 tid592 [dbg,dev:COM3] GetAnswer # retries = 6
2014-12-22T19:32:42.876169 tid592 [dbg,dev:COM3] GetAnswer <- \n0.0\r
2014-12-22T19:32:42.876169 tid592 [dbg,dev:COM3] SetCommand -> f? \r
2014-12-22T19:32:42.886169 tid592 [dbg,dev:COM3] GetAnswer # retries = 11
2014-12-22T19:32:42.886169 tid592 [dbg,dev:COM3] GetAnswer <- \n0\r
2014-12-22T19:32:42.886169 tid592 [dbg,dev:COM3] SetCommand -> hrs? \r
2014-12-22T19:32:42.896170 tid592 [dbg,dev:COM3] GetAnswer # retries = 11
2014-12-22T19:32:42.896170 tid592 [dbg,dev:COM3] GetAnswer <- \n114.13\r
2014-12-22T19:32:42.896170 tid592 [dbg,dev:COM3] SetCommand -> ilk? \r
2014-12-22T19:32:42.905170 tid592 [dbg,dev:COM3] GetAnswer # retries = 10
2014-12-22T19:32:42.905170 tid592 [dbg,dev:COM3] GetAnswer <- \n0\r
2014-12-22T19:32:42.905170 tid592 [dbg,dev:COM3] SetCommand -> l? \r
2014-12-22T19:32:42.916171 tid592 [dbg,dev:COM3] GetAnswer # retries = 12
2014-12-22T19:32:42.916171 tid592 [dbg,dev:COM3] GetAnswer <- \n0\r
2014-12-22T19:32:42.916171 tid592 [dbg,dev:COM3] SetCommand -> l? \r
2014-12-22T19:32:42.926171 tid592 [dbg,dev:COM3] GetAnswer # retries = 11
2014-12-22T19:32:42.926171 tid592 [dbg,dev:COM3] GetAnswer <- \n0\r
2014-12-22T19:32:42.926171 tid592 [dbg,dev:COM3] SetCommand -> pa? \r
2014-12-22T19:32:42.936172 tid592 [dbg,dev:COM3] GetAnswer # retries = 11
2014-12-22T19:32:42.936172 tid592 [dbg,dev:COM3] GetAnswer <- \n-0.0000\r
2014-12-22T19:32:42.936172 tid592 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-22T19:32:42.946173 tid592 [dbg,dev:COM3] GetAnswer # retries = 11
2014-12-22T19:32:42.946173 tid592 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-22T19:32:42.946173 tid592 [dbg,dev:COM3] SetCommand -> sn? \r
2014-12-22T19:32:42.956173 tid592 [dbg,dev:COM3] GetAnswer # retries = 11
2014-12-22T19:32:42.956173 tid592 [dbg,dev:COM3] GetAnswer <- \n488006152\r
2014-12-22T19:32:42.956173 tid592 [dbg,dev:COM3] SetCommand -> ver? \r
2014-12-22T19:32:42.966174 tid592 [dbg,dev:COM3] GetAnswer # retries = 11
2014-12-22T19:32:42.966174 tid592 [dbg,dev:COM3] GetAnswer <- \n6.65\r
2014-12-22T19:32:42.966174 tid592 [IFO,Core] Did update system state cache
2014-12-22T19:32:42.967174 tid592 [dbg,dev:COM3] SetCommand -> l? \r
2014-12-22T19:32:42.976174 tid592 [dbg,dev:COM3] GetAnswer # retries = 10
2014-12-22T19:32:42.976174 tid592 [dbg,dev:COM3] GetAnswer <- \n0\r
2014-12-22T19:32:42.976174 tid592 [ERR,Core] Error occurred in device CMMCore::getShutterOpen(): Error in device Cobolt: Invalid state (position) requested.
2014-12-22T19:32:42.976174 tid592 [IFO,App]
[ ] java.lang.Exception: Error in device Cobolt: Invalid state (position) requested. in Thread[AWT-EventQueue-0,6,main]
[ ] at mmcorej.MMCoreJJNI.CMMCore_getShutterOpen__SWIG_0(Native Method)
[ ] at mmcorej.CMMCore.getShutterOpen(CMMCore.java:885)
[ ] at org.micromanager.MMStudioMainFrame.updateGUI(MMStudioMainFrame.java:2812)
[ ] at org.micromanager.MMStudioMainFrame.updateGUI(MMStudioMainFrame.java:2782)
[ ] at org.micromanager.MMStudioMainFrame$13.run(MMStudioMainFrame.java:1044)
[ ] at org.micromanager.utils.GUIUtils$4.actionPerformed(GUIUtils.java:404)
[ ] at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:1995)
[ ] at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2318)
[ ] at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:387)
[ ] at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:242)
[ ] at javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:236)
[ ] at java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:272)
[ ] at java.awt.Component.processMouseEvent(Component.java:6289)
[ ] at javax.swing.JComponent.processMouseEvent(JComponent.java:3267)
[ ] at java.awt.Component.processEvent(Component.java:6054)
[ ] at java.awt.Container.processEvent(Container.java:2041)
[ ] at java.awt.Component.dispatchEventImpl(Component.java:4652)
[ ] at java.awt.Container.dispatchEventImpl(Container.java:2099)
[ ] at java.awt.Component.dispatchEvent(Component.java:4482)
[ ] at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4577)
[ ] at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4238)
[ ] at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4168)
[ ] at java.awt.Container.dispatchEventImpl(Container.java:2085)
[ ] at java.awt.Window.dispatchEventImpl(Window.java:2478)
[ ] at java.awt.Component.dispatchEvent(Component.java:4482)
[ ] at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:644)
[ ] at java.awt.EventQueue.access$000(EventQueue.java:85)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:603)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:601)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:617)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:615)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.awt.EventQueue.dispatchEvent(EventQueue.java:614)
[ ] at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269)
[ ] at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184)
[ ] at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161)
[ ] at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
2014-12-22T19:32:42.977174 tid592 [IFO,App] [UI] JButton "Refresh" clicked in MMStudioMainFrame.
2014-12-22T19:32:44.453259 tid592 [dbg,Core] Will update system state cache
2014-12-22T19:32:44.453259 tid592 [dbg,dev:COM3] SetCommand -> i? \r
2014-12-22T19:32:44.465259 tid592 [dbg,dev:COM3] GetAnswer # retries = 13
2014-12-22T19:32:44.465259 tid592 [dbg,dev:COM3] GetAnswer <- \n0.0\r
2014-12-22T19:32:44.465259 tid592 [dbg,dev:COM3] SetCommand -> f? \r
2014-12-22T19:32:44.475260 tid592 [dbg,dev:COM3] GetAnswer # retries = 11
2014-12-22T19:32:44.475260 tid592 [dbg,dev:COM3] GetAnswer <- \n0\r
2014-12-22T19:32:44.475260 tid592 [dbg,dev:COM3] SetCommand -> hrs? \r
2014-12-22T19:32:44.485261 tid592 [dbg,dev:COM3] GetAnswer # retries = 11
2014-12-22T19:32:44.485261 tid592 [dbg,dev:COM3] GetAnswer <- \n114.13\r
2014-12-22T19:32:44.485261 tid592 [dbg,dev:COM3] SetCommand -> ilk? \r
2014-12-22T19:32:44.495261 tid592 [dbg,dev:COM3] GetAnswer # retries = 11
2014-12-22T19:32:44.495261 tid592 [dbg,dev:COM3] GetAnswer <- \n0\r
2014-12-22T19:32:44.495261 tid592 [dbg,dev:COM3] SetCommand -> l? \r
2014-12-22T19:32:44.505262 tid592 [dbg,dev:COM3] GetAnswer # retries = 11
2014-12-22T19:32:44.505262 tid592 [dbg,dev:COM3] GetAnswer <- \n0\r
2014-12-22T19:32:44.505262 tid592 [dbg,dev:COM3] SetCommand -> l? \r
2014-12-22T19:32:44.515262 tid592 [dbg,dev:COM3] GetAnswer # retries = 11
2014-12-22T19:32:44.515262 tid592 [dbg,dev:COM3] GetAnswer <- \n0\r
2014-12-22T19:32:44.515262 tid592 [dbg,dev:COM3] SetCommand -> pa? \r
2014-12-22T19:32:44.525263 tid592 [dbg,dev:COM3] GetAnswer # retries = 11
2014-12-22T19:32:44.525263 tid592 [dbg,dev:COM3] GetAnswer <- \n-0.0000\r
2014-12-22T19:32:44.525263 tid592 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-22T19:32:44.535263 tid592 [dbg,dev:COM3] GetAnswer # retries = 11
2014-12-22T19:32:44.535263 tid592 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-22T19:32:44.535263 tid592 [dbg,dev:COM3] SetCommand -> sn? \r
2014-12-22T19:32:44.545264 tid592 [dbg,dev:COM3] GetAnswer # retries = 11
2014-12-22T19:32:44.545264 tid592 [dbg,dev:COM3] GetAnswer <- \n488006152\r
2014-12-22T19:32:44.545264 tid592 [dbg,dev:COM3] SetCommand -> ver? \r
2014-12-22T19:32:44.555265 tid592 [dbg,dev:COM3] GetAnswer # retries = 11
2014-12-22T19:32:44.555265 tid592 [dbg,dev:COM3] GetAnswer <- \n6.65\r
2014-12-22T19:32:44.555265 tid592 [IFO,Core] Did update system state cache
2014-12-22T19:32:44.556265 tid592 [dbg,dev:COM3] SetCommand -> l? \r
2014-12-22T19:32:44.565265 tid592 [dbg,dev:COM3] GetAnswer # retries = 10
2014-12-22T19:32:44.565265 tid592 [dbg,dev:COM3] GetAnswer <- \n0\r
2014-12-22T19:32:44.565265 tid592 [ERR,Core] Error occurred in device CMMCore::getShutterOpen(): Error in device Cobolt: Invalid state (position) requested.
2014-12-22T19:32:44.565265 tid592 [IFO,App]
[ ] java.lang.Exception: Error in device Cobolt: Invalid state (position) requested. in Thread[AWT-EventQueue-0,6,main]
[ ] at mmcorej.MMCoreJJNI.CMMCore_getShutterOpen__SWIG_0(Native Method)
[ ] at mmcorej.CMMCore.getShutterOpen(CMMCore.java:885)
[ ] at org.micromanager.MMStudioMainFrame.updateGUI(MMStudioMainFrame.java:2812)
[ ] at org.micromanager.MMStudioMainFrame.updateGUI(MMStudioMainFrame.java:2782)
[ ] at org.micromanager.MMStudioMainFrame$13.run(MMStudioMainFrame.java:1044)
[ ] at org.micromanager.utils.GUIUtils$4.actionPerformed(GUIUtils.java:404)
[ ] at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:1995)
[ ] at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2318)
[ ] at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:387)
[ ] at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:242)
[ ] at javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:236)
[ ] at java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:272)
[ ] at java.awt.Component.processMouseEvent(Component.java:6289)
[ ] at javax.swing.JComponent.processMouseEvent(JComponent.java:3267)
[ ] at java.awt.Component.processEvent(Component.java:6054)
[ ] at java.awt.Container.processEvent(Container.java:2041)
[ ] at java.awt.Component.dispatchEventImpl(Component.java:4652)
[ ] at java.awt.Container.dispatchEventImpl(Container.java:2099)
[ ] at java.awt.Component.dispatchEvent(Component.java:4482)
[ ] at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4577)
[ ] at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4238)
[ ] at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4168)
[ ] at java.awt.Container.dispatchEventImpl(Container.java:2085)
[ ] at java.awt.Window.dispatchEventImpl(Window.java:2478)
[ ] at java.awt.Component.dispatchEvent(Component.java:4482)
[ ] at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:644)
[ ] at java.awt.EventQueue.access$000(EventQueue.java:85)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:603)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:601)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:617)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:615)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.awt.EventQueue.dispatchEvent(EventQueue.java:614)
[ ] at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269)
[ ] at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184)
[ ] at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161)
[ ] at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
2014-12-22T19:32:44.565265 tid592 [IFO,App] [UI] JButton "Refresh" clicked in MMStudioMainFrame.
2014-12-22T19:32:45.826337 tid592 [dbg,Core] Will update system state cache
2014-12-22T19:32:45.826337 tid592 [dbg,dev:COM3] SetCommand -> i? \r
2014-12-22T19:32:45.835338 tid592 [dbg,dev:COM3] GetAnswer # retries = 10
2014-12-22T19:32:45.835338 tid592 [dbg,dev:COM3] GetAnswer <- \n0.0\r
2014-12-22T19:32:45.835338 tid592 [dbg,dev:COM3] SetCommand -> f? \r
2014-12-22T19:32:45.845338 tid592 [dbg,dev:COM3] GetAnswer # retries = 11
2014-12-22T19:32:45.845338 tid592 [dbg,dev:COM3] GetAnswer <- \n0\r
2014-12-22T19:32:45.845338 tid592 [dbg,dev:COM3] SetCommand -> hrs? \r
2014-12-22T19:32:45.855339 tid592 [dbg,dev:COM3] GetAnswer # retries = 11
2014-12-22T19:32:45.855339 tid592 [dbg,dev:COM3] GetAnswer <- \n114.13\r
2014-12-22T19:32:45.855339 tid592 [dbg,dev:COM3] SetCommand -> ilk? \r
2014-12-22T19:32:45.864339 tid592 [dbg,dev:COM3] GetAnswer # retries = 10
2014-12-22T19:32:45.864339 tid592 [dbg,dev:COM3] GetAnswer <- \n0\r
2014-12-22T19:32:45.864339 tid592 [dbg,dev:COM3] SetCommand -> l? \r
2014-12-22T19:32:45.875340 tid592 [dbg,dev:COM3] GetAnswer # retries = 12
2014-12-22T19:32:45.875340 tid592 [dbg,dev:COM3] GetAnswer <- \n0\r
2014-12-22T19:32:45.875340 tid592 [dbg,dev:COM3] SetCommand -> l? \r
2014-12-22T19:32:45.885341 tid592 [dbg,dev:COM3] GetAnswer # retries = 11
2014-12-22T19:32:45.885341 tid592 [dbg,dev:COM3] GetAnswer <- \n0\r
2014-12-22T19:32:45.885341 tid592 [dbg,dev:COM3] SetCommand -> pa? \r
2014-12-22T19:32:45.895341 tid592 [dbg,dev:COM3] GetAnswer # retries = 11
2014-12-22T19:32:45.895341 tid592 [dbg,dev:COM3] GetAnswer <- \n-0.0000\r
2014-12-22T19:32:45.895341 tid592 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-22T19:32:45.905342 tid592 [dbg,dev:COM3] GetAnswer # retries = 11
2014-12-22T19:32:45.905342 tid592 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-22T19:32:45.905342 tid592 [dbg,dev:COM3] SetCommand -> sn? \r
2014-12-22T19:32:45.915342 tid592 [dbg,dev:COM3] GetAnswer # retries = 11
2014-12-22T19:32:45.915342 tid592 [dbg,dev:COM3] GetAnswer <- \n488006152\r
2014-12-22T19:32:45.915342 tid592 [dbg,dev:COM3] SetCommand -> ver? \r
2014-12-22T19:32:45.925343 tid592 [dbg,dev:COM3] GetAnswer # retries = 11
2014-12-22T19:32:45.925343 tid592 [dbg,dev:COM3] GetAnswer <- \n6.65\r
2014-12-22T19:32:45.925343 tid592 [IFO,Core] Did update system state cache
2014-12-22T19:32:45.926343 tid592 [dbg,dev:COM3] SetCommand -> l? \r
2014-12-22T19:32:45.935343 tid592 [dbg,dev:COM3] GetAnswer # retries = 10
2014-12-22T19:32:45.935343 tid592 [dbg,dev:COM3] GetAnswer <- \n0\r
2014-12-22T19:32:45.935343 tid592 [ERR,Core] Error occurred in device CMMCore::getShutterOpen(): Error in device Cobolt: Invalid state (position) requested.
2014-12-22T19:32:45.935343 tid592 [IFO,App]
[ ] java.lang.Exception: Error in device Cobolt: Invalid state (position) requested. in Thread[AWT-EventQueue-0,6,main]
[ ] at mmcorej.MMCoreJJNI.CMMCore_getShutterOpen__SWIG_0(Native Method)
[ ] at mmcorej.CMMCore.getShutterOpen(CMMCore.java:885)
[ ] at org.micromanager.MMStudioMainFrame.updateGUI(MMStudioMainFrame.java:2812)
[ ] at org.micromanager.MMStudioMainFrame.updateGUI(MMStudioMainFrame.java:2782)
[ ] at org.micromanager.MMStudioMainFrame$13.run(MMStudioMainFrame.java:1044)
[ ] at org.micromanager.utils.GUIUtils$4.actionPerformed(GUIUtils.java:404)
[ ] at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:1995)
[ ] at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2318)
[ ] at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:387)
[ ] at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:242)
[ ] at javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:236)
[ ] at java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:272)
[ ] at java.awt.Component.processMouseEvent(Component.java:6289)
[ ] at javax.swing.JComponent.processMouseEvent(JComponent.java:3267)
[ ] at java.awt.Component.processEvent(Component.java:6054)
[ ] at java.awt.Container.processEvent(Container.java:2041)
[ ] at java.awt.Component.dispatchEventImpl(Component.java:4652)
[ ] at java.awt.Container.dispatchEventImpl(Container.java:2099)
[ ] at java.awt.Component.dispatchEvent(Component.java:4482)
[ ] at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4577)
[ ] at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4238)
[ ] at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4168)
[ ] at java.awt.Container.dispatchEventImpl(Container.java:2085)
[ ] at java.awt.Window.dispatchEventImpl(Window.java:2478)
[ ] at java.awt.Component.dispatchEvent(Component.java:4482)
[ ] at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:644)
[ ] at java.awt.EventQueue.access$000(EventQueue.java:85)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:603)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:601)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:617)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:615)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.awt.EventQueue.dispatchEvent(EventQueue.java:614)
[ ] at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269)
[ ] at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184)
[ ] at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161)
[ ] at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
2014-12-22T19:32:45.936344 tid592 [IFO,App] [UI] JButton "Refresh" clicked in MMStudioMainFrame.
2014-12-22T19:32:47.031406 tid592 [IFO,App] Error: No camera configured
2014-12-22T19:32:59.683130 tid592 [IFO,App]
[ ] java.lang.Exception: Cannot set Core property Shutter to invalid value "Cobolt" in Thread[AWT-EventQueue-0,6,main]
[ ] at mmcorej.MMCoreJJNI.CMMCore_setChannelGroup(Native Method)
[ ] at mmcorej.CMMCore.setChannelGroup(CMMCore.java:665)
[ ] at org.micromanager.acquisition.AcquisitionWrapperEngine.setChannelGroup(AcquisitionWrapperEngine.java:690)
[ ] at org.micromanager.AcqControlDlg$17.actionPerformed(AcqControlDlg.java:1238)
[ ] at javax.swing.JComboBox.fireActionEvent(JComboBox.java:1240)
[ ] at javax.swing.JComboBox.setSelectedItem(JComboBox.java:567)
[ ] at org.micromanager.AcqControlDlg.updateGUIContents(AcqControlDlg.java:2268)
[ ] at org.micromanager.AcqControlDlg.applySettings(AcqControlDlg.java:2427)
[ ] at org.micromanager.AcqControlDlg.saveAcqSettings(AcqControlDlg.java:1865)
[ ] at org.micromanager.AcqControlDlg.close(AcqControlDlg.java:1710)
[ ] at org.micromanager.MMStudioMainFrame.cleanupOnClose(MMStudioMainFrame.java:2928)
[ ] at org.micromanager.MMStudioMainFrame.closeSequence(MMStudioMainFrame.java:3027)
[ ] at MMStudioPlugin$2.run(MMStudioPlugin.java:102)
[ ] at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:199)
[ ] at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:642)
[ ] at java.awt.EventQueue.access$000(EventQueue.java:85)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:603)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:601)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.awt.EventQueue.dispatchEvent(EventQueue.java:612)
[ ] at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269)
[ ] at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184)
[ ] at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161)
[ ] at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
-------------- next part --------------
2014-12-22T19:29:45.086861 tid7012 [IFO,LogManager] Enabled primary log file C:\Users\User\Desktop\OpenSPIM.app\CoreLogs\CoreLog20141222T192945_pid6880.txt
2014-12-22T19:29:45.086861 tid7012 [IFO,LogManager] Switching primary log level from info to trace
2014-12-22T19:29:45.102461 tid7012 [IFO,LogManager] Switched primary log level from info to trace
2014-12-22T19:29:45.102461 tid7012 [IFO,App] User: User
2014-12-22T19:29:45.102461 tid7012 [IFO,App] Host: OpenSPIM01
2014-12-22T19:29:45.102461 tid7012 [IFO,App] MM Studio version: 1.4.x dev
2014-12-22T19:29:45.102461 tid7012 [IFO,App] MMCore version 4.0.4
2014-12-22T19:29:45.102461 tid7012 [IFO,App] Device API version 60, Module API version 10
2014-12-22T19:29:45.102461 tid7012 [IFO,App] Operating System: Windows 7 (x86) 6.1
2014-12-22T19:29:45.102461 tid7012 [IFO,App] JVM: Java HotSpot(TM) Client VM, version 1.6.0_24, 32-bit
2014-12-22T19:29:45.102461 tid7012 [dbg,Core] Will set circular buffer size to 25 MB
2014-12-22T19:29:45.102461 tid7012 [dbg,Core] Did set circular buffer size to 25 MB
2014-12-22T19:29:45.227262 tid7076 [IFO,App] Attempting to install plugin spim.SPIMAcquisition
2014-12-22T19:29:45.289662 tid7076 [IFO,App] Attempting to install autofocus plugin Autofocus
2014-12-22T19:29:45.289662 tid7076 [IFO,App] Attempting to install autofocus plugin AutofocusDuo
2014-12-22T19:29:45.289662 tid7076 [IFO,App] Attempting to install autofocus plugin AutofocusTB
2014-12-22T19:29:45.289662 tid7076 [IFO,App] Attempting to install autofocus plugin OughtaFocus
2014-12-22T19:29:49.470469 tid7012 [dbg,Core] Will set property: Core-Initialize = 0
2014-12-22T19:29:49.470469 tid7012 [dbg,Core] Will unload all devices
2014-12-22T19:29:49.470469 tid7012 [IFO,Core] Did unload all devices
2014-12-22T19:29:49.470469 tid7012 [dbg,App] Notification for Device: Core Property: Initialize changed to value: 0
2014-12-22T19:29:49.501669 tid7012 [dbg,Core] Did set property: Core-Initialize = 0
2014-12-22T19:29:49.501669 tid7012 [dbg,Core] Will load device COM3 from SerialManager
2014-12-22T19:29:49.564069 tid7012 [IFO,Core] Did load device COM3 from SerialManager; label = COM3
2014-12-22T19:29:49.564069 tid7012 [dbg,Core] Will load device Cobolt from Cobolt
2014-12-22T19:29:49.626469 tid7012 [IFO,Core] Did load device Cobolt from Cobolt; label = Cobolt
2014-12-22T19:29:49.626469 tid7012 [dbg,Core] Will load device HamamatsuHam_DCAM from HamamatsuHam
2014-12-22T19:29:49.688870 tid7012 [IFO,Core] Did load device HamamatsuHam_DCAM from HamamatsuHam; label = OrcaFlash
2014-12-22T19:29:49.688870 tid7012 [dbg,Core] Will load device Picard Twister from PicardStage
2014-12-22T19:29:49.798070 tid7012 [IFO,Core] Did load device Picard Twister from PicardStage; label = Picard Twister
2014-12-22T19:29:49.798070 tid7012 [dbg,Core] Will load device Picard Z Stage from PicardStage
2014-12-22T19:29:49.798070 tid7012 [IFO,Core] Did load device Picard Z Stage from PicardStage; label = Picard Z Stage
2014-12-22T19:29:49.798070 tid7012 [dbg,Core] Will load device Picard XY Stage from PicardStage
2014-12-22T19:29:49.798070 tid7012 [IFO,Core] Did load device Picard XY Stage from PicardStage; label = Picard XY Stage
2014-12-22T19:29:49.798070 tid7012 [dbg,Core] Will set property: Cobolt-Max Power = 60.0000
2014-12-22T19:29:49.798070 tid7012 [dbg,Core] Did set property: Cobolt-Max Power = 60.0000
2014-12-22T19:29:49.798070 tid7012 [dbg,Core] Will set property: Cobolt-Port = COM3
2014-12-22T19:29:49.798070 tid7012 [dbg,Core] Did set property: Cobolt-Port = COM3
2014-12-22T19:29:49.798070 tid7012 [dbg,Core] Will set property: Picard Twister-Serial Number = 37
2014-12-22T19:29:49.813670 tid7012 [dbg,Core] Did set property: Picard Twister-Serial Number = 37
2014-12-22T19:29:49.813670 tid7012 [dbg,Core] Will set property: Picard Z Stage-Serial Number = 140
2014-12-22T19:29:49.829270 tid7012 [dbg,Core] Did set property: Picard Z Stage-Serial Number = 140
2014-12-22T19:29:49.829270 tid7012 [dbg,Core] Will set property: Picard XY Stage-Serial Number (X) = 139
2014-12-22T19:29:49.844870 tid7012 [dbg,Core] Did set property: Picard XY Stage-Serial Number (X) = 139
2014-12-22T19:29:49.844870 tid7012 [dbg,Core] Will set property: Picard XY Stage-Serial Number (Y) = 141
2014-12-22T19:29:49.891670 tid7012 [dbg,Core] Did set property: Picard XY Stage-Serial Number (Y) = 141
2014-12-22T19:29:49.891670 tid7012 [dbg,Core] Will set property: Picard XY Stage-X-Max = 8000
2014-12-22T19:29:49.891670 tid7012 [dbg,Core] Did set property: Picard XY Stage-X-Max = 8000
2014-12-22T19:29:49.891670 tid7012 [dbg,Core] Will set property: Picard XY Stage-X-Min = 1
2014-12-22T19:29:49.891670 tid7012 [dbg,Core] Did set property: Picard XY Stage-X-Min = 1
2014-12-22T19:29:49.891670 tid7012 [dbg,Core] Will set property: Picard XY Stage-Y-Max = 8000
2014-12-22T19:29:49.891670 tid7012 [dbg,Core] Did set property: Picard XY Stage-Y-Max = 8000
2014-12-22T19:29:49.891670 tid7012 [dbg,Core] Will set property: Picard XY Stage-Y-Min = 1
2014-12-22T19:29:49.891670 tid7012 [dbg,Core] Did set property: Picard XY Stage-Y-Min = 1
2014-12-22T19:29:49.891670 tid7012 [dbg,Core] Will set property: COM3-AnswerTimeout = 500.0000
2014-12-22T19:29:49.891670 tid7012 [dbg,Core] Did set property: COM3-AnswerTimeout = 500.0000
2014-12-22T19:29:49.891670 tid7012 [dbg,Core] Will set property: COM3-BaudRate = 115200
2014-12-22T19:29:49.891670 tid7012 [dbg,Core] Did set property: COM3-BaudRate = 115200
2014-12-22T19:29:49.891670 tid7012 [dbg,Core] Will set property: COM3-DelayBetweenCharsMs = 0.0000
2014-12-22T19:29:49.891670 tid7012 [dbg,Core] Did set property: COM3-DelayBetweenCharsMs = 0.0000
2014-12-22T19:29:49.891670 tid7012 [dbg,Core] Will set property: COM3-Handshaking = Off
2014-12-22T19:29:49.891670 tid7012 [dbg,Core] Did set property: COM3-Handshaking = Off
2014-12-22T19:29:49.891670 tid7012 [dbg,Core] Will set property: COM3-Parity = None
2014-12-22T19:29:49.891670 tid7012 [dbg,Core] Did set property: COM3-Parity = None
2014-12-22T19:29:49.891670 tid7012 [dbg,Core] Will set property: COM3-StopBits = 1
2014-12-22T19:29:49.891670 tid7012 [dbg,Core] Did set property: COM3-StopBits = 1
2014-12-22T19:29:49.891670 tid7012 [dbg,Core] Will set property: COM3-Verbose = 1
2014-12-22T19:29:49.891670 tid7012 [dbg,Core] Did set property: COM3-Verbose = 1
2014-12-22T19:29:49.891670 tid7012 [dbg,Core] Will set property: Core-Initialize = 1
2014-12-22T19:29:49.907270 tid7012 [IFO,Core] Will initialize 6 devices
2014-12-22T19:29:49.907270 tid7012 [IFO,Core] Will initialize device COM3
2014-12-22T19:29:49.907270 tid7012 [dbg,dev:COM3] Attempting to set baud of COM3 to 115200
2014-12-22T19:29:49.922870 tid7012 [dbg,dev:COM3] Attempting to set flow of COM3 to none
2014-12-22T19:29:49.922870 tid7012 [dbg,dev:COM3] Attempting to set parity of COM3 to none
2014-12-22T19:29:49.938470 tid7012 [dbg,dev:COM3] Attempting to set stopBits of COM3 to 1
2014-12-22T19:29:49.954070 tid7012 [IFO,Core] Did initialize device COM3
2014-12-22T19:29:49.954070 tid7012 [IFO,Core] Will initialize device Cobolt
2014-12-22T19:29:49.954070 tid7012 [dbg,dev:COM3] SetCommand -> i? \r
2014-12-22T19:29:50.000870 tid7012 [dbg,dev:COM3] GetAnswer # retries = 4
2014-12-22T19:29:50.000870 tid7012 [dbg,dev:COM3] GetAnswer <- 0.0\r
2014-12-22T19:29:50.000870 tid7012 [dbg,dev:COM3] SetCommand -> f? \r
2014-12-22T19:29:50.047670 tid7012 [dbg,dev:COM3] GetAnswer # retries = 4
2014-12-22T19:29:50.047670 tid7012 [dbg,dev:COM3] GetAnswer <- \n0\r
2014-12-22T19:29:50.047670 tid7012 [dbg,dev:COM3] SetCommand -> hrs? \r
2014-12-22T19:29:50.094470 tid7012 [dbg,dev:COM3] GetAnswer # retries = 4
2014-12-22T19:29:50.094470 tid7012 [dbg,dev:COM3] GetAnswer <- \n114.13\r
2014-12-22T19:29:50.094470 tid7012 [dbg,dev:COM3] SetCommand -> ilk? \r
2014-12-22T19:29:50.141270 tid7012 [dbg,dev:COM3] GetAnswer # retries = 4
2014-12-22T19:29:50.141270 tid7012 [dbg,dev:COM3] GetAnswer <- \n0\r
2014-12-22T19:29:50.141270 tid7012 [dbg,dev:COM3] SetCommand -> l? \r
2014-12-22T19:29:50.188070 tid7012 [dbg,dev:COM3] GetAnswer # retries = 4
2014-12-22T19:29:50.188070 tid7012 [dbg,dev:COM3] GetAnswer <- \n0\r
2014-12-22T19:29:50.188070 tid7012 [dbg,dev:COM3] SetCommand -> l? \r
2014-12-22T19:29:50.234870 tid7012 [dbg,dev:COM3] GetAnswer # retries = 4
2014-12-22T19:29:50.234870 tid7012 [dbg,dev:COM3] GetAnswer <- \n0\r
2014-12-22T19:29:50.234870 tid7012 [dbg,dev:COM3] SetCommand -> pa? \r
2014-12-22T19:29:50.281671 tid7012 [dbg,dev:COM3] GetAnswer # retries = 4
2014-12-22T19:29:50.281671 tid7012 [dbg,dev:COM3] GetAnswer <- \n-0.0000\r
2014-12-22T19:29:50.281671 tid7012 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-22T19:29:50.328471 tid7012 [dbg,dev:COM3] GetAnswer # retries = 4
2014-12-22T19:29:50.328471 tid7012 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-22T19:29:50.328471 tid7012 [dbg,dev:COM3] SetCommand -> sn? \r
2014-12-22T19:29:50.375271 tid7012 [dbg,dev:COM3] GetAnswer # retries = 4
2014-12-22T19:29:50.375271 tid7012 [dbg,dev:COM3] GetAnswer <- \n488006152\r
2014-12-22T19:29:50.375271 tid7012 [dbg,dev:COM3] SetCommand -> ver? \r
2014-12-22T19:29:50.422071 tid7012 [dbg,dev:COM3] GetAnswer # retries = 4
2014-12-22T19:29:50.422071 tid7012 [dbg,dev:COM3] GetAnswer <- \n6.65\r
2014-12-22T19:29:50.422071 tid7012 [dbg,dev:COM3] SetCommand -> l0\r
2014-12-22T19:29:50.484471 tid7012 [dbg,dev:COM3] GetAnswer # retries = 5
2014-12-22T19:29:50.484471 tid7012 [dbg,dev:COM3] GetAnswer <- \nOK\r
2014-12-22T19:29:50.484471 tid7012 [IFO,Core] Did initialize device Cobolt
2014-12-22T19:29:50.484471 tid7012 [IFO,Core] Default shutter set to Cobolt
2014-12-22T19:29:50.484471 tid7012 [IFO,Core] Will initialize device OrcaFlash
2014-12-22T19:29:53.565410 tid7012 [ERR,Core] Error occurred in device OrcaFlash: Error in device OrcaFlash: Error code 40 (28 hex).
2014-12-22T19:29:53.575411 tid7012 [dbg,Core] Will set property: Core-Camera = OrcaFlash
2014-12-22T19:29:53.575411 tid7012 [dbg,Core] Will set property: Core-Shutter = Cobolt
2014-12-22T19:29:53.575411 tid7012 [dbg,Core] Will set property: Core-Focus = Picard Z Stage
2014-12-22T19:29:53.575411 tid7012 [dbg,Core] Will set property: Core-AutoShutter = 1
2014-12-22T19:29:53.575411 tid7012 [dbg,Core] Autoshutter turned on
2014-12-22T19:29:53.575411 tid7012 [dbg,App] Notification for Device: Core Property: AutoShutter changed to value: 1
2014-12-22T19:29:53.575411 tid7012 [dbg,Core] Did set property: Core-AutoShutter = 1
2014-12-22T19:29:53.589411 tid7012 [IFO,App]
[ ] java.lang.Exception: Line 38: Property,Core,Initialize,1
[ ] Error in device OrcaFlash: Error code 40 (28 hex).
[ ]
[ ] Line 43: Property,Core,Camera,OrcaFlash
[ ] Cannot set Core property Camera to invalid value "OrcaFlash"
[ ]
[ ] Line 44: Property,Core,Shutter,Cobolt
[ ] Cannot set Core property Shutter to invalid value "Cobolt"
[ ]
[ ] Line 45: Property,Core,Focus,Picard Z Stage
[ ] Cannot set Core property Focus to invalid value "Picard Z Stage"
[ ]
[ ] in Thread[AWT-EventQueue-0,6,main]
[ ] at mmcorej.MMCoreJJNI.CMMCore_loadSystemConfiguration(Native Method)
[ ] at mmcorej.CMMCore.loadSystemConfiguration(CMMCore.java:313)
[ ] at org.micromanager.MMStudioMainFrame.loadSystemConfiguration(MMStudioMainFrame.java:3151)
[ ] at org.micromanager.MMStudioMainFrame.access$2200(MMStudioMainFrame.java:157)
[ ] at org.micromanager.MMStudioMainFrame$1.windowOpened(MMStudioMainFrame.java:560)
[ ] at java.awt.AWTEventMulticaster.windowOpened(AWTEventMulticaster.java:322)
[ ] at java.awt.Window.processWindowEvent(Window.java:1862)
[ ] at javax.swing.JFrame.processWindowEvent(JFrame.java:274)
[ ] at java.awt.Window.processEvent(Window.java:1823)
[ ] at java.awt.Component.dispatchEventImpl(Component.java:4652)
[ ] at java.awt.Container.dispatchEventImpl(Container.java:2099)
[ ] at java.awt.Window.dispatchEventImpl(Window.java:2478)
[ ] at java.awt.Component.dispatchEvent(Component.java:4482)
[ ] at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:644)
[ ] at java.awt.EventQueue.access$000(EventQueue.java:85)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:603)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:601)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:617)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:615)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.awt.EventQueue.dispatchEvent(EventQueue.java:614)
[ ] at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269)
[ ] at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184)
[ ] at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161)
[ ] at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
2014-12-22T19:30:22.765080 tid7012 [dbg,dev:COM3] SetCommand -> l? \r
2014-12-22T19:30:22.772080 tid7012 [dbg,dev:COM3] GetAnswer # retries = 8
2014-12-22T19:30:22.772080 tid7012 [dbg,dev:COM3] GetAnswer <- \n0\r
2014-12-22T19:30:22.772080 tid7012 [ERR,Core] Error occurred in device CMMCore::getShutterOpen(): Error in device Cobolt: Invalid state (position) requested.
2014-12-22T19:30:22.772080 tid7012 [IFO,App]
[ ] java.lang.Exception: Error in device Cobolt: Invalid state (position) requested. in Thread[AWT-EventQueue-0,6,main]
[ ] at mmcorej.MMCoreJJNI.CMMCore_getShutterOpen__SWIG_0(Native Method)
[ ] at mmcorej.CMMCore.getShutterOpen(CMMCore.java:885)
[ ] at org.micromanager.MMStudioMainFrame.updateGUI(MMStudioMainFrame.java:2812)
[ ] at org.micromanager.MMStudioMainFrame.updateGUI(MMStudioMainFrame.java:2782)
[ ] at org.micromanager.MMStudioMainFrame.initializeGUI(MMStudioMainFrame.java:2701)
[ ] at org.micromanager.MMStudioMainFrame.loadSystemConfiguration(MMStudioMainFrame.java:3165)
[ ] at org.micromanager.MMStudioMainFrame.access$2200(MMStudioMainFrame.java:157)
[ ] at org.micromanager.MMStudioMainFrame$1.windowOpened(MMStudioMainFrame.java:560)
[ ] at java.awt.AWTEventMulticaster.windowOpened(AWTEventMulticaster.java:322)
[ ] at java.awt.Window.processWindowEvent(Window.java:1862)
[ ] at javax.swing.JFrame.processWindowEvent(JFrame.java:274)
[ ] at java.awt.Window.processEvent(Window.java:1823)
[ ] at java.awt.Component.dispatchEventImpl(Component.java:4652)
[ ] at java.awt.Container.dispatchEventImpl(Container.java:2099)
[ ] at java.awt.Window.dispatchEventImpl(Window.java:2478)
[ ] at java.awt.Component.dispatchEvent(Component.java:4482)
[ ] at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:644)
[ ] at java.awt.EventQueue.access$000(EventQueue.java:85)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:603)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:601)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:617)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:615)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.awt.EventQueue.dispatchEvent(EventQueue.java:614)
[ ] at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269)
[ ] at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184)
[ ] at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161)
[ ] at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
2014-12-22T19:30:22.775081 tid7012 [IFO,App] Startup script file (C:\Users\User\Desktop\OpenSPIM.app\MMStartup.bsh) not present.
2014-12-22T19:30:22.861086 tid7012 [IFO,App]
[ ] java.lang.Exception: Cannot set Core property Shutter to invalid value "Cobolt" in Thread[AWT-EventQueue-0,6,main]
[ ] at mmcorej.MMCoreJJNI.CMMCore_setChannelGroup(Native Method)
[ ] at mmcorej.CMMCore.setChannelGroup(CMMCore.java:665)
[ ] at org.micromanager.acquisition.AcquisitionWrapperEngine.setChannelGroup(AcquisitionWrapperEngine.java:690)
[ ] at org.micromanager.AcqControlDlg.loadAcqSettings(AcqControlDlg.java:1803)
[ ] at org.micromanager.AcqControlDlg.<init>(AcqControlDlg.java:1612)
[ ] at org.micromanager.MMStudioMainFrame$1.windowOpened(MMStudioMainFrame.java:569)
[ ] at java.awt.AWTEventMulticaster.windowOpened(AWTEventMulticaster.java:322)
[ ] at java.awt.Window.processWindowEvent(Window.java:1862)
[ ] at javax.swing.JFrame.processWindowEvent(JFrame.java:274)
[ ] at java.awt.Window.processEvent(Window.java:1823)
[ ] at java.awt.Component.dispatchEventImpl(Component.java:4652)
[ ] at java.awt.Container.dispatchEventImpl(Container.java:2099)
[ ] at java.awt.Window.dispatchEventImpl(Window.java:2478)
[ ] at java.awt.Component.dispatchEvent(Component.java:4482)
[ ] at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:644)
[ ] at java.awt.EventQueue.access$000(EventQueue.java:85)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:603)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:601)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:617)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:615)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.awt.EventQueue.dispatchEvent(EventQueue.java:614)
[ ] at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269)
[ ] at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184)
[ ] at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161)
[ ] at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
2014-12-22T19:30:22.974092 tid7012 [IFO,App]
[ ] java.lang.Exception: Cannot set Core property Shutter to invalid value "Cobolt" in Thread[AWT-EventQueue-0,6,main]
[ ] at mmcorej.MMCoreJJNI.CMMCore_setChannelGroup(Native Method)
[ ] at mmcorej.CMMCore.setChannelGroup(CMMCore.java:665)
[ ] at org.micromanager.acquisition.AcquisitionWrapperEngine.setChannelGroup(AcquisitionWrapperEngine.java:690)
[ ] at org.micromanager.AcqControlDlg$17.actionPerformed(AcqControlDlg.java:1238)
[ ] at javax.swing.JComboBox.fireActionEvent(JComboBox.java:1240)
[ ] at javax.swing.JComboBox.setSelectedItem(JComboBox.java:567)
[ ] at org.micromanager.AcqControlDlg.updateGUIContents(AcqControlDlg.java:2268)
[ ] at org.micromanager.AcqControlDlg.<init>(AcqControlDlg.java:1618)
[ ] at org.micromanager.MMStudioMainFrame$1.windowOpened(MMStudioMainFrame.java:569)
[ ] at java.awt.AWTEventMulticaster.windowOpened(AWTEventMulticaster.java:322)
[ ] at java.awt.Window.processWindowEvent(Window.java:1862)
[ ] at javax.swing.JFrame.processWindowEvent(JFrame.java:274)
[ ] at java.awt.Window.processEvent(Window.java:1823)
[ ] at java.awt.Component.dispatchEventImpl(Component.java:4652)
[ ] at java.awt.Container.dispatchEventImpl(Container.java:2099)
[ ] at java.awt.Window.dispatchEventImpl(Window.java:2478)
[ ] at java.awt.Component.dispatchEvent(Component.java:4482)
[ ] at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:644)
[ ] at java.awt.EventQueue.access$000(EventQueue.java:85)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:603)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:601)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:617)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:615)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.awt.EventQueue.dispatchEvent(EventQueue.java:614)
[ ] at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269)
[ ] at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184)
[ ] at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161)
[ ] at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
2014-12-22T19:30:22.981092 tid7012 [IFO,App]
[ ] java.lang.Exception: Cannot set Core property Shutter to invalid value "Cobolt" in Thread[AWT-EventQueue-0,6,main]
[ ] at mmcorej.MMCoreJJNI.CMMCore_setChannelGroup(Native Method)
[ ] at mmcorej.CMMCore.setChannelGroup(CMMCore.java:665)
[ ] at org.micromanager.acquisition.AcquisitionWrapperEngine.setChannelGroup(AcquisitionWrapperEngine.java:690)
[ ] at org.micromanager.AcqControlDlg$17.actionPerformed(AcqControlDlg.java:1238)
[ ] at javax.swing.JComboBox.fireActionEvent(JComboBox.java:1240)
[ ] at javax.swing.JComboBox.setSelectedItem(JComboBox.java:567)
[ ] at org.micromanager.AcqControlDlg.updateGUIContents(AcqControlDlg.java:2268)
[ ] at org.micromanager.AcqControlDlg.applySettings(AcqControlDlg.java:2427)
[ ] at org.micromanager.AcqControlDlg.<init>(AcqControlDlg.java:1621)
[ ] at org.micromanager.MMStudioMainFrame$1.windowOpened(MMStudioMainFrame.java:569)
[ ] at java.awt.AWTEventMulticaster.windowOpened(AWTEventMulticaster.java:322)
[ ] at java.awt.Window.processWindowEvent(Window.java:1862)
[ ] at javax.swing.JFrame.processWindowEvent(JFrame.java:274)
[ ] at java.awt.Window.processEvent(Window.java:1823)
[ ] at java.awt.Component.dispatchEventImpl(Component.java:4652)
[ ] at java.awt.Container.dispatchEventImpl(Container.java:2099)
[ ] at java.awt.Window.dispatchEventImpl(Window.java:2478)
[ ] at java.awt.Component.dispatchEvent(Component.java:4482)
[ ] at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:644)
[ ] at java.awt.EventQueue.access$000(EventQueue.java:85)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:603)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:601)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:617)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:615)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.awt.EventQueue.dispatchEvent(EventQueue.java:614)
[ ] at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269)
[ ] at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184)
[ ] at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161)
[ ] at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
2014-12-22T19:30:31.578584 tid7012 [IFO,App]
[ ] java.lang.Exception: Cannot set Core property Shutter to invalid value "Cobolt" in Thread[AWT-EventQueue-0,6,main]
[ ] at mmcorej.MMCoreJJNI.CMMCore_setChannelGroup(Native Method)
[ ] at mmcorej.CMMCore.setChannelGroup(CMMCore.java:665)
[ ] at org.micromanager.acquisition.AcquisitionWrapperEngine.setChannelGroup(AcquisitionWrapperEngine.java:690)
[ ] at org.micromanager.AcqControlDlg$17.actionPerformed(AcqControlDlg.java:1238)
[ ] at javax.swing.JComboBox.fireActionEvent(JComboBox.java:1240)
[ ] at javax.swing.JComboBox.setSelectedItem(JComboBox.java:567)
[ ] at org.micromanager.AcqControlDlg.updateGUIContents(AcqControlDlg.java:2268)
[ ] at org.micromanager.AcqControlDlg.applySettings(AcqControlDlg.java:2427)
[ ] at org.micromanager.AcqControlDlg.saveAcqSettings(AcqControlDlg.java:1865)
[ ] at org.micromanager.AcqControlDlg.close(AcqControlDlg.java:1710)
[ ] at org.micromanager.MMStudioMainFrame.cleanupOnClose(MMStudioMainFrame.java:2928)
[ ] at org.micromanager.MMStudioMainFrame.closeSequence(MMStudioMainFrame.java:3027)
[ ] at MMStudioPlugin$2.run(MMStudioPlugin.java:102)
[ ] at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:199)
[ ] at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:642)
[ ] at java.awt.EventQueue.access$000(EventQueue.java:85)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:603)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:601)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.awt.EventQueue.dispatchEvent(EventQueue.java:612)
[ ] at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269)
[ ] at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184)
[ ] at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161)
[ ] at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
2014-12-22T19:30:33.614701 tid7012 [dbg,Core] Waiting for device COM3...
2014-12-22T19:30:33.614701 tid7012 [dbg,Core] Finished waiting for device COM3
2014-12-22T19:30:33.614701 tid7012 [dbg,Core] Waiting for device Cobolt...
2014-12-22T19:30:33.614701 tid7012 [dbg,Core] Finished waiting for device Cobolt
2014-12-22T19:30:33.614701 tid7012 [dbg,Core] Waiting for device OrcaFlash...
2014-12-22T19:30:33.614701 tid7012 [dbg,Core] Finished waiting for device OrcaFlash
2014-12-22T19:30:33.614701 tid7012 [dbg,Core] Waiting for device Picard Twister...
2014-12-22T19:30:33.614701 tid7012 [dbg,Core] Finished waiting for device Picard Twister
2014-12-22T19:30:33.614701 tid7012 [dbg,Core] Waiting for device Picard Z Stage...
2014-12-22T19:30:33.614701 tid7012 [dbg,Core] Finished waiting for device Picard Z Stage
2014-12-22T19:30:33.614701 tid7012 [dbg,Core] Waiting for device Picard XY Stage...
2014-12-22T19:30:33.614701 tid7012 [dbg,Core] Finished waiting for device Picard XY Stage
2014-12-22T19:30:33.614701 tid7012 [dbg,Core] Will unload all devices
2014-12-22T19:30:33.614701 tid7012 [dbg,dev:COM3] SetCommand -> l0\r
2014-12-22T19:30:33.630702 tid7012 [dbg,dev:COM3] GetAnswer # retries = 16
2014-12-22T19:30:33.630702 tid7012 [dbg,dev:COM3] GetAnswer <- \nOK\r
2014-12-22T19:30:33.830713 tid7012 [IFO,Core] Did unload all devices
2014-12-22T19:30:33.830713 tid7012 [IFO,Core] System reset
2014-12-22T19:30:33.830713 tid7012 [IFO,Core] Core session ended
-------------- next part --------------
2014-12-22T19:22:11.671986 tid5392 [IFO,LogManager] Enabled primary log file C:\Users\User\Desktop\OpenSPIM.app\CoreLogs\CoreLog20141222T192211_pid1492.txt
2014-12-22T19:22:11.671986 tid5392 [IFO,LogManager] Switching primary log level from info to trace
2014-12-22T19:22:11.687586 tid5392 [IFO,LogManager] Switched primary log level from info to trace
2014-12-22T19:22:11.687586 tid5392 [IFO,App] User: User
2014-12-22T19:22:11.687586 tid5392 [IFO,App] Host: OpenSPIM01
2014-12-22T19:22:11.687586 tid5392 [IFO,App] MM Studio version: 1.4.x dev
2014-12-22T19:22:11.687586 tid5392 [IFO,App] MMCore version 4.0.4
2014-12-22T19:22:11.687586 tid5392 [IFO,App] Device API version 60, Module API version 10
2014-12-22T19:22:11.687586 tid5392 [IFO,App] Operating System: Windows 7 (x86) 6.1
2014-12-22T19:22:11.687586 tid5392 [IFO,App] JVM: Java HotSpot(TM) Client VM, version 1.6.0_24, 32-bit
2014-12-22T19:22:11.687586 tid5392 [dbg,Core] Will set circular buffer size to 25 MB
2014-12-22T19:22:11.687586 tid5392 [dbg,Core] Did set circular buffer size to 25 MB
2014-12-22T19:22:11.827986 tid5108 [IFO,App] Attempting to install plugin spim.SPIMAcquisition
2014-12-22T19:22:11.843586 tid5108 [IFO,App] Attempting to install autofocus plugin Autofocus
2014-12-22T19:22:11.843586 tid5108 [IFO,App] Attempting to install autofocus plugin AutofocusDuo
2014-12-22T19:22:11.843586 tid5108 [IFO,App] Attempting to install autofocus plugin AutofocusTB
2014-12-22T19:22:11.843586 tid5108 [IFO,App] Attempting to install autofocus plugin OughtaFocus
2014-12-22T19:22:13.668789 tid5392 [dbg,Core] Will set property: Core-Initialize = 0
2014-12-22T19:22:13.668789 tid5392 [dbg,Core] Will unload all devices
2014-12-22T19:22:13.668789 tid5392 [IFO,Core] Did unload all devices
2014-12-22T19:22:13.668789 tid5392 [dbg,App] Notification for Device: Core Property: Initialize changed to value: 0
2014-12-22T19:22:13.668789 tid5392 [dbg,Core] Did set property: Core-Initialize = 0
2014-12-22T19:22:13.668789 tid5392 [dbg,Core] Will load device COM3 from SerialManager
2014-12-22T19:22:13.668789 tid5392 [IFO,Core] Did load device COM3 from SerialManager; label = COM3
2014-12-22T19:22:13.668789 tid5392 [dbg,Core] Will load device Cobolt from Cobolt
2014-12-22T19:22:13.668789 tid5392 [IFO,Core] Did load device Cobolt from Cobolt; label = Cobolt
2014-12-22T19:22:13.668789 tid5392 [dbg,Core] Will load device HamamatsuHam_DCAM from HamamatsuHam
2014-12-22T19:22:13.684389 tid5392 [IFO,Core] Did load device HamamatsuHam_DCAM from HamamatsuHam; label = OrcaFlash
2014-12-22T19:22:13.684389 tid5392 [dbg,Core] Will load device Picard Twister from PicardStage
2014-12-22T19:22:13.684389 tid5392 [IFO,Core] Did load device Picard Twister from PicardStage; label = Picard Twister
2014-12-22T19:22:13.684389 tid5392 [dbg,Core] Will load device Picard Z Stage from PicardStage
2014-12-22T19:22:13.684389 tid5392 [IFO,Core] Did load device Picard Z Stage from PicardStage; label = Picard Z Stage
2014-12-22T19:22:13.684389 tid5392 [dbg,Core] Will load device Picard XY Stage from PicardStage
2014-12-22T19:22:13.684389 tid5392 [IFO,Core] Did load device Picard XY Stage from PicardStage; label = Picard XY Stage
2014-12-22T19:22:13.684389 tid5392 [dbg,Core] Will set property: Cobolt-Max Power = 60.0000
2014-12-22T19:22:13.684389 tid5392 [dbg,Core] Did set property: Cobolt-Max Power = 60.0000
2014-12-22T19:22:13.684389 tid5392 [dbg,Core] Will set property: Cobolt-Port = COM3
2014-12-22T19:22:13.684389 tid5392 [dbg,Core] Did set property: Cobolt-Port = COM3
2014-12-22T19:22:13.684389 tid5392 [dbg,Core] Will set property: Picard Twister-Serial Number = 37
2014-12-22T19:22:13.699989 tid5392 [dbg,Core] Did set property: Picard Twister-Serial Number = 37
2014-12-22T19:22:13.699989 tid5392 [dbg,Core] Will set property: Picard Z Stage-Serial Number = 140
2014-12-22T19:22:13.715589 tid5392 [dbg,Core] Did set property: Picard Z Stage-Serial Number = 140
2014-12-22T19:22:13.715589 tid5392 [dbg,Core] Will set property: Picard XY Stage-Serial Number (X) = 139
2014-12-22T19:22:13.731189 tid5392 [dbg,Core] Did set property: Picard XY Stage-Serial Number (X) = 139
2014-12-22T19:22:13.731189 tid5392 [dbg,Core] Will set property: Picard XY Stage-Serial Number (Y) = 141
2014-12-22T19:22:13.777989 tid5392 [dbg,Core] Did set property: Picard XY Stage-Serial Number (Y) = 141
2014-12-22T19:22:13.777989 tid5392 [dbg,Core] Will set property: Picard XY Stage-X-Max = 8000
2014-12-22T19:22:13.777989 tid5392 [dbg,Core] Did set property: Picard XY Stage-X-Max = 8000
2014-12-22T19:22:13.777989 tid5392 [dbg,Core] Will set property: Picard XY Stage-X-Min = 1
2014-12-22T19:22:13.777989 tid5392 [dbg,Core] Did set property: Picard XY Stage-X-Min = 1
2014-12-22T19:22:13.777989 tid5392 [dbg,Core] Will set property: Picard XY Stage-Y-Max = 8000
2014-12-22T19:22:13.777989 tid5392 [dbg,Core] Did set property: Picard XY Stage-Y-Max = 8000
2014-12-22T19:22:13.777989 tid5392 [dbg,Core] Will set property: Picard XY Stage-Y-Min = 1
2014-12-22T19:22:13.777989 tid5392 [dbg,Core] Did set property: Picard XY Stage-Y-Min = 1
2014-12-22T19:22:13.777989 tid5392 [dbg,Core] Will set property: COM3-AnswerTimeout = 500.0000
2014-12-22T19:22:13.777989 tid5392 [dbg,Core] Did set property: COM3-AnswerTimeout = 500.0000
2014-12-22T19:22:13.777989 tid5392 [dbg,Core] Will set property: COM3-BaudRate = 115200
2014-12-22T19:22:13.777989 tid5392 [dbg,Core] Did set property: COM3-BaudRate = 115200
2014-12-22T19:22:13.777989 tid5392 [dbg,Core] Will set property: COM3-DelayBetweenCharsMs = 0.0000
2014-12-22T19:22:13.777989 tid5392 [dbg,Core] Did set property: COM3-DelayBetweenCharsMs = 0.0000
2014-12-22T19:22:13.777989 tid5392 [dbg,Core] Will set property: COM3-Handshaking = Off
2014-12-22T19:22:13.777989 tid5392 [dbg,Core] Did set property: COM3-Handshaking = Off
2014-12-22T19:22:13.777989 tid5392 [dbg,Core] Will set property: COM3-Parity = None
2014-12-22T19:22:13.777989 tid5392 [dbg,Core] Did set property: COM3-Parity = None
2014-12-22T19:22:13.777989 tid5392 [dbg,Core] Will set property: COM3-StopBits = 1
2014-12-22T19:22:13.777989 tid5392 [dbg,Core] Did set property: COM3-StopBits = 1
2014-12-22T19:22:13.777989 tid5392 [dbg,Core] Will set property: COM3-Verbose = 1
2014-12-22T19:22:13.777989 tid5392 [dbg,Core] Did set property: COM3-Verbose = 1
2014-12-22T19:22:13.777989 tid5392 [dbg,Core] Will set property: Core-Initialize = 1
2014-12-22T19:22:13.777989 tid5392 [IFO,Core] Will initialize 6 devices
2014-12-22T19:22:13.777989 tid5392 [IFO,Core] Will initialize device COM3
2014-12-22T19:22:13.777989 tid5392 [IFO,dev:COM3] Failed to open serial port \\.\COM3: CreateFileA() returned Windows system error code 2
2014-12-22T19:22:13.777989 tid5392 [ERR,Core] Error occurred in device COM3: Error in device COM3: Unknown error in the device.
2014-12-22T19:22:13.777989 tid5392 [dbg,Core] Will set property: Core-Camera = OrcaFlash
2014-12-22T19:22:13.793589 tid5392 [dbg,Core] Will set property: Core-Shutter = Cobolt
2014-12-22T19:22:13.793589 tid5392 [dbg,Core] Will set property: Core-Focus = Picard Z Stage
2014-12-22T19:22:13.793589 tid5392 [dbg,Core] Will set property: Core-AutoShutter = 1
2014-12-22T19:22:13.793589 tid5392 [dbg,Core] Autoshutter turned on
2014-12-22T19:22:13.793589 tid5392 [dbg,App] Notification for Device: Core Property: AutoShutter changed to value: 1
2014-12-22T19:22:13.793589 tid5392 [dbg,Core] Did set property: Core-AutoShutter = 1
2014-12-22T19:22:13.793589 tid5392 [IFO,App]
[ ] java.lang.Exception: Line 38: Property,Core,Initialize,1
[ ] Error in device COM3: Unknown error in the device.
[ ]
[ ] Line 43: Property,Core,Camera,OrcaFlash
[ ] Cannot set Core property Camera to invalid value "OrcaFlash"
[ ]
[ ] Line 44: Property,Core,Shutter,Cobolt
[ ] Cannot set Core property Shutter to invalid value "Cobolt"
[ ]
[ ] Line 45: Property,Core,Focus,Picard Z Stage
[ ] Cannot set Core property Focus to invalid value "Picard Z Stage"
[ ]
[ ] in Thread[AWT-EventQueue-0,6,main]
[ ] at mmcorej.MMCoreJJNI.CMMCore_loadSystemConfiguration(Native Method)
[ ] at mmcorej.CMMCore.loadSystemConfiguration(CMMCore.java:313)
[ ] at org.micromanager.MMStudioMainFrame.loadSystemConfiguration(MMStudioMainFrame.java:3151)
[ ] at org.micromanager.MMStudioMainFrame.access$2200(MMStudioMainFrame.java:157)
[ ] at org.micromanager.MMStudioMainFrame$1.windowOpened(MMStudioMainFrame.java:560)
[ ] at java.awt.AWTEventMulticaster.windowOpened(AWTEventMulticaster.java:322)
[ ] at java.awt.Window.processWindowEvent(Window.java:1862)
[ ] at javax.swing.JFrame.processWindowEvent(JFrame.java:274)
[ ] at java.awt.Window.processEvent(Window.java:1823)
[ ] at java.awt.Component.dispatchEventImpl(Component.java:4652)
[ ] at java.awt.Container.dispatchEventImpl(Container.java:2099)
[ ] at java.awt.Window.dispatchEventImpl(Window.java:2478)
[ ] at java.awt.Component.dispatchEvent(Component.java:4482)
[ ] at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:644)
[ ] at java.awt.EventQueue.access$000(EventQueue.java:85)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:603)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:601)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:617)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:615)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.awt.EventQueue.dispatchEvent(EventQueue.java:614)
[ ] at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269)
[ ] at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184)
[ ] at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161)
[ ] at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
2014-12-22T19:22:15.774793 tid5392 [dbg,Core] Will update system state cache
2014-12-22T19:22:15.774793 tid5392 [IFO,Core] Did update system state cache
2014-12-22T19:22:15.774793 tid5392 [IFO,App] Startup script file (C:\Users\User\Desktop\OpenSPIM.app\MMStartup.bsh) not present.
2014-12-22T19:22:22.529605 tid5392 [IFO,App] [UI] JMenu "Tools" clicked in MMStudioMainFrame.
2014-12-22T19:22:27.786814 tid5392 [dbg,Core] Waiting for device COM3...
2014-12-22T19:22:27.786814 tid5392 [dbg,Core] Finished waiting for device COM3
2014-12-22T19:22:27.786814 tid5392 [dbg,Core] Waiting for device Cobolt...
2014-12-22T19:22:27.786814 tid5392 [dbg,Core] Finished waiting for device Cobolt
2014-12-22T19:22:27.786814 tid5392 [dbg,Core] Waiting for device OrcaFlash...
2014-12-22T19:22:27.786814 tid5392 [dbg,Core] Finished waiting for device OrcaFlash
2014-12-22T19:22:27.786814 tid5392 [dbg,Core] Waiting for device Picard Twister...
2014-12-22T19:22:27.786814 tid5392 [dbg,Core] Finished waiting for device Picard Twister
2014-12-22T19:22:27.786814 tid5392 [dbg,Core] Waiting for device Picard Z Stage...
2014-12-22T19:22:27.786814 tid5392 [dbg,Core] Finished waiting for device Picard Z Stage
2014-12-22T19:22:27.786814 tid5392 [dbg,Core] Waiting for device Picard XY Stage...
2014-12-22T19:22:27.786814 tid5392 [dbg,Core] Finished waiting for device Picard XY Stage
2014-12-22T19:22:27.786814 tid5392 [dbg,Core] Will set property: Core-Initialize = 0
2014-12-22T19:22:27.786814 tid5392 [dbg,Core] Will unload all devices
2014-12-22T19:22:27.786814 tid5392 [IFO,Core] Did unload all devices
2014-12-22T19:22:27.786814 tid5392 [dbg,App] Notification for Device: Core Property: Initialize changed to value: 0
2014-12-22T19:22:27.786814 tid5392 [dbg,Core] Did set property: Core-Initialize = 0
2014-12-22T19:22:27.786814 tid5392 [dbg,Core] Will load device COM3 from SerialManager
2014-12-22T19:22:27.786814 tid5392 [IFO,Core] Did load device COM3 from SerialManager; label = COM3
2014-12-22T19:22:27.786814 tid5392 [dbg,Core] Will load device Cobolt from Cobolt
2014-12-22T19:22:27.786814 tid5392 [IFO,Core] Did load device Cobolt from Cobolt; label = Cobolt
2014-12-22T19:22:27.786814 tid5392 [dbg,Core] Will load device HamamatsuHam_DCAM from HamamatsuHam
2014-12-22T19:22:27.786814 tid5392 [IFO,Core] Did load device HamamatsuHam_DCAM from HamamatsuHam; label = OrcaFlash
2014-12-22T19:22:27.786814 tid5392 [dbg,Core] Will load device Picard Twister from PicardStage
2014-12-22T19:22:27.786814 tid5392 [IFO,Core] Did load device Picard Twister from PicardStage; label = Picard Twister
2014-12-22T19:22:27.786814 tid5392 [dbg,Core] Will load device Picard Z Stage from PicardStage
2014-12-22T19:22:27.786814 tid5392 [IFO,Core] Did load device Picard Z Stage from PicardStage; label = Picard Z Stage
2014-12-22T19:22:27.786814 tid5392 [dbg,Core] Will load device Picard XY Stage from PicardStage
2014-12-22T19:22:27.786814 tid5392 [IFO,Core] Did load device Picard XY Stage from PicardStage; label = Picard XY Stage
2014-12-22T19:22:27.786814 tid5392 [dbg,Core] Will set property: Cobolt-Max Power = 60.0000
2014-12-22T19:22:27.786814 tid5392 [dbg,Core] Did set property: Cobolt-Max Power = 60.0000
2014-12-22T19:22:27.786814 tid5392 [dbg,Core] Will set property: Cobolt-Port = COM3
2014-12-22T19:22:27.786814 tid5392 [dbg,Core] Did set property: Cobolt-Port = COM3
2014-12-22T19:22:27.786814 tid5392 [dbg,Core] Will set property: Picard Twister-Serial Number = 37
2014-12-22T19:22:27.802414 tid5392 [dbg,Core] Did set property: Picard Twister-Serial Number = 37
2014-12-22T19:22:27.802414 tid5392 [dbg,Core] Will set property: Picard Z Stage-Serial Number = 140
2014-12-22T19:22:27.833614 tid5392 [dbg,Core] Did set property: Picard Z Stage-Serial Number = 140
2014-12-22T19:22:27.833614 tid5392 [dbg,Core] Will set property: Picard XY Stage-Serial Number (X) = 139
2014-12-22T19:22:27.833614 tid5392 [dbg,Core] Did set property: Picard XY Stage-Serial Number (X) = 139
2014-12-22T19:22:27.833614 tid5392 [dbg,Core] Will set property: Picard XY Stage-Serial Number (Y) = 141
2014-12-22T19:22:27.896014 tid5392 [dbg,Core] Did set property: Picard XY Stage-Serial Number (Y) = 141
2014-12-22T19:22:27.896014 tid5392 [dbg,Core] Will set property: Picard XY Stage-X-Max = 8000
2014-12-22T19:22:27.896014 tid5392 [dbg,Core] Did set property: Picard XY Stage-X-Max = 8000
2014-12-22T19:22:27.896014 tid5392 [dbg,Core] Will set property: Picard XY Stage-X-Min = 1
2014-12-22T19:22:27.896014 tid5392 [dbg,Core] Did set property: Picard XY Stage-X-Min = 1
2014-12-22T19:22:27.896014 tid5392 [dbg,Core] Will set property: Picard XY Stage-Y-Max = 8000
2014-12-22T19:22:27.896014 tid5392 [dbg,Core] Did set property: Picard XY Stage-Y-Max = 8000
2014-12-22T19:22:27.896014 tid5392 [dbg,Core] Will set property: Picard XY Stage-Y-Min = 1
2014-12-22T19:22:27.896014 tid5392 [dbg,Core] Did set property: Picard XY Stage-Y-Min = 1
2014-12-22T19:22:27.896014 tid5392 [dbg,Core] Will set property: COM3-AnswerTimeout = 500.0000
2014-12-22T19:22:27.896014 tid5392 [dbg,Core] Did set property: COM3-AnswerTimeout = 500.0000
2014-12-22T19:22:27.896014 tid5392 [dbg,Core] Will set property: COM3-BaudRate = 115200
2014-12-22T19:22:27.896014 tid5392 [dbg,Core] Did set property: COM3-BaudRate = 115200
2014-12-22T19:22:27.896014 tid5392 [dbg,Core] Will set property: COM3-DelayBetweenCharsMs = 0.0000
2014-12-22T19:22:27.896014 tid5392 [dbg,Core] Did set property: COM3-DelayBetweenCharsMs = 0.0000
2014-12-22T19:22:27.896014 tid5392 [dbg,Core] Will set property: COM3-Handshaking = Off
2014-12-22T19:22:27.896014 tid5392 [dbg,Core] Did set property: COM3-Handshaking = Off
2014-12-22T19:22:27.896014 tid5392 [dbg,Core] Will set property: COM3-Parity = None
2014-12-22T19:22:27.896014 tid5392 [dbg,Core] Did set property: COM3-Parity = None
2014-12-22T19:22:27.896014 tid5392 [dbg,Core] Will set property: COM3-StopBits = 1
2014-12-22T19:22:27.896014 tid5392 [dbg,Core] Did set property: COM3-StopBits = 1
2014-12-22T19:22:27.896014 tid5392 [dbg,Core] Will set property: COM3-Verbose = 1
2014-12-22T19:22:27.896014 tid5392 [dbg,Core] Did set property: COM3-Verbose = 1
2014-12-22T19:22:27.896014 tid5392 [dbg,Core] Will set property: Core-Initialize = 1
2014-12-22T19:22:27.896014 tid5392 [IFO,Core] Will initialize 6 devices
2014-12-22T19:22:27.896014 tid5392 [IFO,Core] Will initialize device COM3
2014-12-22T19:22:27.896014 tid5392 [IFO,dev:COM3] Failed to open serial port \\.\COM3: CreateFileA() returned Windows system error code 2
2014-12-22T19:22:27.896014 tid5392 [ERR,Core] Error occurred in device COM3: Error in device COM3: Unknown error in the device.
2014-12-22T19:22:27.896014 tid5392 [dbg,Core] Will set property: Core-Camera = OrcaFlash
2014-12-22T19:22:27.896014 tid5392 [dbg,Core] Will set property: Core-Shutter = Cobolt
2014-12-22T19:22:27.896014 tid5392 [dbg,Core] Will set property: Core-Focus = Picard Z Stage
2014-12-22T19:22:27.896014 tid5392 [dbg,Core] Will set property: Core-AutoShutter = 1
2014-12-22T19:22:27.896014 tid5392 [dbg,Core] Autoshutter turned on
2014-12-22T19:22:27.896014 tid5392 [dbg,App] Notification for Device: Core Property: AutoShutter changed to value: 1
2014-12-22T19:22:27.896014 tid5392 [dbg,Core] Did set property: Core-AutoShutter = 1
2014-12-22T19:22:27.896014 tid5392 [IFO,App]
[ ] java.lang.Exception: Line 38: Property,Core,Initialize,1
[ ] Error in device COM3: Unknown error in the device.
[ ]
[ ] Line 43: Property,Core,Camera,OrcaFlash
[ ] Cannot set Core property Camera to invalid value "OrcaFlash"
[ ]
[ ] Line 44: Property,Core,Shutter,Cobolt
[ ] Cannot set Core property Shutter to invalid value "Cobolt"
[ ]
[ ] Line 45: Property,Core,Focus,Picard Z Stage
[ ] Cannot set Core property Focus to invalid value "Picard Z Stage"
[ ]
[ ] in Thread[AWT-EventQueue-0,6,main]
[ ] at mmcorej.MMCoreJJNI.CMMCore_loadSystemConfiguration(Native Method)
[ ] at mmcorej.CMMCore.loadSystemConfiguration(CMMCore.java:313)
[ ] at org.micromanager.MMStudioMainFrame.loadSystemConfiguration(MMStudioMainFrame.java:3151)
[ ] at org.micromanager.MMStudioMainFrame.access$2200(MMStudioMainFrame.java:157)
[ ] at org.micromanager.MMStudioMainFrame$42.run(MMStudioMainFrame.java:1440)
[ ] at org.micromanager.utils.GUIUtils$3.actionPerformed(GUIUtils.java:303)
[ ] at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:1995)
[ ] at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2318)
[ ] at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:387)
[ ] at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:242)
[ ] at javax.swing.AbstractButton.doClick(AbstractButton.java:357)
[ ] at javax.swing.plaf.basic.BasicMenuItemUI.doClick(BasicMenuItemUI.java:809)
[ ] at javax.swing.plaf.basic.BasicMenuItemUI$Handler.mouseReleased(BasicMenuItemUI.java:850)
[ ] at java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:272)
[ ] at java.awt.Component.processMouseEvent(Component.java:6289)
[ ] at javax.swing.JComponent.processMouseEvent(JComponent.java:3267)
[ ] at java.awt.Component.processEvent(Component.java:6054)
[ ] at java.awt.Container.processEvent(Container.java:2041)
[ ] at java.awt.Component.dispatchEventImpl(Component.java:4652)
[ ] at java.awt.Container.dispatchEventImpl(Container.java:2099)
[ ] at java.awt.Component.dispatchEvent(Component.java:4482)
[ ] at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4577)
[ ] at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4238)
[ ] at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4168)
[ ] at java.awt.Container.dispatchEventImpl(Container.java:2085)
[ ] at java.awt.Window.dispatchEventImpl(Window.java:2478)
[ ] at java.awt.Component.dispatchEvent(Component.java:4482)
[ ] at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:644)
[ ] at java.awt.EventQueue.access$000(EventQueue.java:85)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:603)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:601)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:617)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:615)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.awt.EventQueue.dispatchEvent(EventQueue.java:614)
[ ] at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269)
[ ] at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184)
[ ] at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161)
[ ] at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
2014-12-22T19:22:30.953620 tid5392 [dbg,Core] Will update system state cache
2014-12-22T19:22:30.953620 tid5392 [IFO,Core] Did update system state cache
2014-12-22T19:22:30.953620 tid5392 [dbg,Core] Will update system state cache
2014-12-22T19:22:30.969220 tid5392 [IFO,Core] Did update system state cache
2014-12-22T19:22:34.494826 tid5392 [dbg,Core] Waiting for device COM3...
2014-12-22T19:22:34.494826 tid5392 [dbg,Core] Finished waiting for device COM3
2014-12-22T19:22:34.494826 tid5392 [dbg,Core] Waiting for device Cobolt...
2014-12-22T19:22:34.494826 tid5392 [dbg,Core] Finished waiting for device Cobolt
2014-12-22T19:22:34.494826 tid5392 [dbg,Core] Waiting for device OrcaFlash...
2014-12-22T19:22:34.494826 tid5392 [dbg,Core] Finished waiting for device OrcaFlash
2014-12-22T19:22:34.494826 tid5392 [dbg,Core] Waiting for device Picard Twister...
2014-12-22T19:22:34.494826 tid5392 [dbg,Core] Finished waiting for device Picard Twister
2014-12-22T19:22:34.494826 tid5392 [dbg,Core] Waiting for device Picard Z Stage...
2014-12-22T19:22:34.494826 tid5392 [dbg,Core] Finished waiting for device Picard Z Stage
2014-12-22T19:22:34.494826 tid5392 [dbg,Core] Waiting for device Picard XY Stage...
2014-12-22T19:22:34.494826 tid5392 [dbg,Core] Finished waiting for device Picard XY Stage
2014-12-22T19:22:34.494826 tid5392 [dbg,Core] Will unload all devices
2014-12-22T19:22:34.494826 tid5392 [IFO,Core] Did unload all devices
2014-12-22T19:22:34.494826 tid5392 [IFO,Core] System reset
2014-12-22T19:22:34.494826 tid5392 [IFO,Core] Core session ended
-------------- next part --------------
2014-12-22T19:21:33.904319 tid7052 [IFO,LogManager] Enabled primary log file C:\Users\User\Desktop\OpenSPIM.app\CoreLogs\CoreLog20141222T192133_pid2796.txt
2014-12-22T19:21:33.904319 tid7052 [IFO,LogManager] Switching primary log level from info to trace
2014-12-22T19:21:33.919919 tid7052 [IFO,LogManager] Switched primary log level from info to trace
2014-12-22T19:21:33.919919 tid7052 [IFO,App] User: User
2014-12-22T19:21:33.919919 tid7052 [IFO,App] Host: OpenSPIM01
2014-12-22T19:21:33.919919 tid7052 [IFO,App] MM Studio version: 1.4.x dev
2014-12-22T19:21:33.919919 tid7052 [IFO,App] MMCore version 4.0.4
2014-12-22T19:21:33.919919 tid7052 [IFO,App] Device API version 60, Module API version 10
2014-12-22T19:21:33.919919 tid7052 [IFO,App] Operating System: Windows 7 (x86) 6.1
2014-12-22T19:21:33.919919 tid7052 [IFO,App] JVM: Java HotSpot(TM) Client VM, version 1.6.0_24, 32-bit
2014-12-22T19:21:33.919919 tid7052 [dbg,Core] Will set circular buffer size to 25 MB
2014-12-22T19:21:33.919919 tid7052 [dbg,Core] Did set circular buffer size to 25 MB
2014-12-22T19:21:34.044720 tid2368 [IFO,App] Attempting to install plugin spim.SPIMAcquisition
2014-12-22T19:21:34.060320 tid2368 [IFO,App] Attempting to install autofocus plugin Autofocus
2014-12-22T19:21:34.060320 tid2368 [IFO,App] Attempting to install autofocus plugin AutofocusDuo
2014-12-22T19:21:34.060320 tid2368 [IFO,App] Attempting to install autofocus plugin AutofocusTB
2014-12-22T19:21:34.060320 tid2368 [IFO,App] Attempting to install autofocus plugin OughtaFocus
2014-12-22T19:21:35.979123 tid7052 [dbg,Core] Will set property: Core-Initialize = 0
2014-12-22T19:21:35.979123 tid7052 [dbg,Core] Will unload all devices
2014-12-22T19:21:35.979123 tid7052 [IFO,Core] Did unload all devices
2014-12-22T19:21:35.979123 tid7052 [dbg,App] Notification for Device: Core Property: Initialize changed to value: 0
2014-12-22T19:21:35.979123 tid7052 [dbg,Core] Did set property: Core-Initialize = 0
2014-12-22T19:21:35.979123 tid7052 [dbg,Core] Will load device COM3 from SerialManager
2014-12-22T19:21:35.979123 tid7052 [IFO,Core] Did load device COM3 from SerialManager; label = COM3
2014-12-22T19:21:35.979123 tid7052 [dbg,Core] Will load device Cobolt from Cobolt
2014-12-22T19:21:35.979123 tid7052 [IFO,Core] Did load device Cobolt from Cobolt; label = Cobolt
2014-12-22T19:21:35.979123 tid7052 [dbg,Core] Will load device HamamatsuHam_DCAM from HamamatsuHam
2014-12-22T19:21:35.979123 tid7052 [IFO,Core] Did load device HamamatsuHam_DCAM from HamamatsuHam; label = OrcaFlash
2014-12-22T19:21:35.979123 tid7052 [dbg,Core] Will load device Picard Twister from PicardStage
2014-12-22T19:21:35.979123 tid7052 [IFO,Core] Did load device Picard Twister from PicardStage; label = Picard Twister
2014-12-22T19:21:35.979123 tid7052 [dbg,Core] Will load device Picard Z Stage from PicardStage
2014-12-22T19:21:35.979123 tid7052 [IFO,Core] Did load device Picard Z Stage from PicardStage; label = Picard Z Stage
2014-12-22T19:21:35.979123 tid7052 [dbg,Core] Will load device Picard XY Stage from PicardStage
2014-12-22T19:21:35.979123 tid7052 [IFO,Core] Did load device Picard XY Stage from PicardStage; label = Picard XY Stage
2014-12-22T19:21:35.979123 tid7052 [dbg,Core] Will set property: Cobolt-Max Power = 60.0000
2014-12-22T19:21:35.979123 tid7052 [dbg,Core] Did set property: Cobolt-Max Power = 60.0000
2014-12-22T19:21:35.979123 tid7052 [dbg,Core] Will set property: Cobolt-Port = COM3
2014-12-22T19:21:35.979123 tid7052 [dbg,Core] Did set property: Cobolt-Port = COM3
2014-12-22T19:21:35.979123 tid7052 [dbg,Core] Will set property: Picard Twister-Serial Number = 37
2014-12-22T19:21:35.994723 tid7052 [dbg,Core] Did set property: Picard Twister-Serial Number = 37
2014-12-22T19:21:35.994723 tid7052 [dbg,Core] Will set property: Picard Z Stage-Serial Number = 140
2014-12-22T19:21:36.025923 tid7052 [dbg,Core] Did set property: Picard Z Stage-Serial Number = 140
2014-12-22T19:21:36.025923 tid7052 [dbg,Core] Will set property: Picard XY Stage-Serial Number (X) = 139
2014-12-22T19:21:36.025923 tid7052 [dbg,Core] Did set property: Picard XY Stage-Serial Number (X) = 139
2014-12-22T19:21:36.025923 tid7052 [dbg,Core] Will set property: Picard XY Stage-Serial Number (Y) = 141
2014-12-22T19:21:36.088323 tid7052 [dbg,Core] Did set property: Picard XY Stage-Serial Number (Y) = 141
2014-12-22T19:21:36.088323 tid7052 [dbg,Core] Will set property: Picard XY Stage-X-Max = 8000
2014-12-22T19:21:36.088323 tid7052 [dbg,Core] Did set property: Picard XY Stage-X-Max = 8000
2014-12-22T19:21:36.088323 tid7052 [dbg,Core] Will set property: Picard XY Stage-X-Min = 1
2014-12-22T19:21:36.088323 tid7052 [dbg,Core] Did set property: Picard XY Stage-X-Min = 1
2014-12-22T19:21:36.088323 tid7052 [dbg,Core] Will set property: Picard XY Stage-Y-Max = 8000
2014-12-22T19:21:36.088323 tid7052 [dbg,Core] Did set property: Picard XY Stage-Y-Max = 8000
2014-12-22T19:21:36.088323 tid7052 [dbg,Core] Will set property: Picard XY Stage-Y-Min = 1
2014-12-22T19:21:36.088323 tid7052 [dbg,Core] Did set property: Picard XY Stage-Y-Min = 1
2014-12-22T19:21:36.088323 tid7052 [dbg,Core] Will set property: COM3-AnswerTimeout = 500.0000
2014-12-22T19:21:36.088323 tid7052 [dbg,Core] Did set property: COM3-AnswerTimeout = 500.0000
2014-12-22T19:21:36.088323 tid7052 [dbg,Core] Will set property: COM3-BaudRate = 115200
2014-12-22T19:21:36.088323 tid7052 [dbg,Core] Did set property: COM3-BaudRate = 115200
2014-12-22T19:21:36.088323 tid7052 [dbg,Core] Will set property: COM3-DelayBetweenCharsMs = 0.0000
2014-12-22T19:21:36.088323 tid7052 [dbg,Core] Did set property: COM3-DelayBetweenCharsMs = 0.0000
2014-12-22T19:21:36.088323 tid7052 [dbg,Core] Will set property: COM3-Handshaking = Off
2014-12-22T19:21:36.088323 tid7052 [dbg,Core] Did set property: COM3-Handshaking = Off
2014-12-22T19:21:36.088323 tid7052 [dbg,Core] Will set property: COM3-Parity = None
2014-12-22T19:21:36.088323 tid7052 [dbg,Core] Did set property: COM3-Parity = None
2014-12-22T19:21:36.088323 tid7052 [dbg,Core] Will set property: COM3-StopBits = 1
2014-12-22T19:21:36.088323 tid7052 [dbg,Core] Did set property: COM3-StopBits = 1
2014-12-22T19:21:36.088323 tid7052 [dbg,Core] Will set property: COM3-Verbose = 1
2014-12-22T19:21:36.088323 tid7052 [dbg,Core] Did set property: COM3-Verbose = 1
2014-12-22T19:21:36.088323 tid7052 [dbg,Core] Will set property: Core-Initialize = 1
2014-12-22T19:21:36.088323 tid7052 [IFO,Core] Will initialize 6 devices
2014-12-22T19:21:36.088323 tid7052 [IFO,Core] Will initialize device COM3
2014-12-22T19:21:36.088323 tid7052 [IFO,dev:COM3] Failed to open serial port \\.\COM3: CreateFileA() returned Windows system error code 2
2014-12-22T19:21:36.088323 tid7052 [ERR,Core] Error occurred in device COM3: Error in device COM3: Unknown error in the device.
2014-12-22T19:21:36.088323 tid7052 [dbg,Core] Will set property: Core-Camera = OrcaFlash
2014-12-22T19:21:36.088323 tid7052 [dbg,Core] Will set property: Core-Shutter = Cobolt
2014-12-22T19:21:36.088323 tid7052 [dbg,Core] Will set property: Core-Focus = Picard Z Stage
2014-12-22T19:21:36.088323 tid7052 [dbg,Core] Will set property: Core-AutoShutter = 1
2014-12-22T19:21:36.088323 tid7052 [dbg,Core] Autoshutter turned on
2014-12-22T19:21:36.088323 tid7052 [dbg,App] Notification for Device: Core Property: AutoShutter changed to value: 1
2014-12-22T19:21:36.088323 tid7052 [dbg,Core] Did set property: Core-AutoShutter = 1
2014-12-22T19:21:36.088323 tid7052 [IFO,App]
[ ] java.lang.Exception: Line 38: Property,Core,Initialize,1
[ ] Error in device COM3: Unknown error in the device.
[ ]
[ ] Line 43: Property,Core,Camera,OrcaFlash
[ ] Cannot set Core property Camera to invalid value "OrcaFlash"
[ ]
[ ] Line 44: Property,Core,Shutter,Cobolt
[ ] Cannot set Core property Shutter to invalid value "Cobolt"
[ ]
[ ] Line 45: Property,Core,Focus,Picard Z Stage
[ ] Cannot set Core property Focus to invalid value "Picard Z Stage"
[ ]
[ ] in Thread[AWT-EventQueue-0,6,main]
[ ] at mmcorej.MMCoreJJNI.CMMCore_loadSystemConfiguration(Native Method)
[ ] at mmcorej.CMMCore.loadSystemConfiguration(CMMCore.java:313)
[ ] at org.micromanager.MMStudioMainFrame.loadSystemConfiguration(MMStudioMainFrame.java:3151)
[ ] at org.micromanager.MMStudioMainFrame.access$2200(MMStudioMainFrame.java:157)
[ ] at org.micromanager.MMStudioMainFrame$1.windowOpened(MMStudioMainFrame.java:560)
[ ] at java.awt.AWTEventMulticaster.windowOpened(AWTEventMulticaster.java:322)
[ ] at java.awt.Window.processWindowEvent(Window.java:1862)
[ ] at javax.swing.JFrame.processWindowEvent(JFrame.java:274)
[ ] at java.awt.Window.processEvent(Window.java:1823)
[ ] at java.awt.Component.dispatchEventImpl(Component.java:4652)
[ ] at java.awt.Container.dispatchEventImpl(Container.java:2099)
[ ] at java.awt.Window.dispatchEventImpl(Window.java:2478)
[ ] at java.awt.Component.dispatchEvent(Component.java:4482)
[ ] at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:644)
[ ] at java.awt.EventQueue.access$000(EventQueue.java:85)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:603)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:601)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:617)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:615)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.awt.EventQueue.dispatchEvent(EventQueue.java:614)
[ ] at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269)
[ ] at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184)
[ ] at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161)
[ ] at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
2014-12-22T19:21:39.957130 tid7052 [dbg,Core] Will update system state cache
2014-12-22T19:21:39.957130 tid7052 [IFO,Core] Did update system state cache
2014-12-22T19:21:39.957130 tid7052 [IFO,App] Startup script file (C:\Users\User\Desktop\OpenSPIM.app\MMStartup.bsh) not present.
2014-12-22T19:21:47.694744 tid7052 [dbg,Core] Waiting for device COM3...
2014-12-22T19:21:47.694744 tid7052 [dbg,Core] Finished waiting for device COM3
2014-12-22T19:21:47.694744 tid7052 [dbg,Core] Waiting for device Cobolt...
2014-12-22T19:21:47.694744 tid7052 [dbg,Core] Finished waiting for device Cobolt
2014-12-22T19:21:47.694744 tid7052 [dbg,Core] Waiting for device OrcaFlash...
2014-12-22T19:21:47.694744 tid7052 [dbg,Core] Finished waiting for device OrcaFlash
2014-12-22T19:21:47.694744 tid7052 [dbg,Core] Waiting for device Picard Twister...
2014-12-22T19:21:47.694744 tid7052 [dbg,Core] Finished waiting for device Picard Twister
2014-12-22T19:21:47.694744 tid7052 [dbg,Core] Waiting for device Picard Z Stage...
2014-12-22T19:21:47.694744 tid7052 [dbg,Core] Finished waiting for device Picard Z Stage
2014-12-22T19:21:47.694744 tid7052 [dbg,Core] Waiting for device Picard XY Stage...
2014-12-22T19:21:47.694744 tid7052 [dbg,Core] Finished waiting for device Picard XY Stage
2014-12-22T19:21:47.694744 tid7052 [dbg,Core] Will unload all devices
2014-12-22T19:21:47.694744 tid7052 [IFO,Core] Did unload all devices
2014-12-22T19:21:47.694744 tid7052 [IFO,Core] System reset
2014-12-22T19:21:47.694744 tid7052 [IFO,Core] Core session ended
-------------- next part --------------
2014-12-20T20:29:03.160740 tid5452 [IFO,LogManager] Enabled primary log file C:\Users\User\Desktop\OpenSPIM.app\CoreLogs\CoreLog20141220T202903_pid8864.txt
2014-12-20T20:29:03.160740 tid5452 [IFO,LogManager] Switching primary log level from info to trace
2014-12-20T20:29:03.170740 tid5452 [IFO,LogManager] Switched primary log level from info to trace
2014-12-20T20:29:03.170740 tid5452 [IFO,App] User: User
2014-12-20T20:29:03.170740 tid5452 [IFO,App] Host: OpenSPIM01
2014-12-20T20:29:03.170740 tid5452 [IFO,App] MM Studio version: 1.4.x dev
2014-12-20T20:29:03.171740 tid5452 [IFO,App] MMCore version 4.0.4
2014-12-20T20:29:03.171740 tid5452 [IFO,App] Device API version 60, Module API version 10
2014-12-20T20:29:03.171740 tid5452 [IFO,App] Operating System: Windows 7 (x86) 6.1
2014-12-20T20:29:03.171740 tid5452 [IFO,App] JVM: Java HotSpot(TM) Client VM, version 1.6.0_24, 32-bit
2014-12-20T20:29:03.173741 tid5452 [dbg,Core] Will set circular buffer size to 25 MB
2014-12-20T20:29:03.173741 tid5452 [dbg,Core] Did set circular buffer size to 25 MB
2014-12-20T20:29:03.297748 tid3300 [IFO,App] Attempting to install plugin spim.SPIMAcquisition
2014-12-20T20:29:03.319749 tid3300 [IFO,App] Attempting to install autofocus plugin Autofocus
2014-12-20T20:29:03.323749 tid3300 [IFO,App] Attempting to install autofocus plugin AutofocusDuo
2014-12-20T20:29:03.323749 tid3300 [IFO,App] Attempting to install autofocus plugin AutofocusTB
2014-12-20T20:29:03.324749 tid3300 [IFO,App] Attempting to install autofocus plugin OughtaFocus
2014-12-20T20:29:06.366923 tid5452 [dbg,Core] Will set property: Core-Initialize = 0
2014-12-20T20:29:06.366923 tid5452 [dbg,Core] Will unload all devices
2014-12-20T20:29:06.366923 tid5452 [IFO,Core] Did unload all devices
2014-12-20T20:29:06.367923 tid5452 [dbg,App] Notification for Device: Core Property: Initialize changed to value: 0
2014-12-20T20:29:06.368923 tid5452 [dbg,Core] Did set property: Core-Initialize = 0
2014-12-20T20:29:06.368923 tid5452 [dbg,Core] Will load device COM3 from SerialManager
2014-12-20T20:29:06.369923 tid5452 [IFO,Core] Did load device COM3 from SerialManager; label = COM3
2014-12-20T20:29:06.369923 tid5452 [dbg,Core] Will load device Cobolt from Cobolt
2014-12-20T20:29:06.370923 tid5452 [IFO,Core] Did load device Cobolt from Cobolt; label = Cobolt
2014-12-20T20:29:06.370923 tid5452 [dbg,Core] Will load device HamamatsuHam_DCAM from HamamatsuHam
2014-12-20T20:29:06.371923 tid5452 [IFO,Core] Did load device HamamatsuHam_DCAM from HamamatsuHam; label = OrcaFlash
2014-12-20T20:29:06.371923 tid5452 [dbg,Core] Will load device Picard Twister from PicardStage
2014-12-20T20:29:06.374924 tid5452 [IFO,Core] Did load device Picard Twister from PicardStage; label = Picard Twister
2014-12-20T20:29:06.374924 tid5452 [dbg,Core] Will load device Picard Z Stage from PicardStage
2014-12-20T20:29:06.374924 tid5452 [IFO,Core] Did load device Picard Z Stage from PicardStage; label = Picard Z Stage
2014-12-20T20:29:06.374924 tid5452 [dbg,Core] Will load device Picard XY Stage from PicardStage
2014-12-20T20:29:06.374924 tid5452 [IFO,Core] Did load device Picard XY Stage from PicardStage; label = Picard XY Stage
2014-12-20T20:29:06.374924 tid5452 [dbg,Core] Will set property: Cobolt-Max Power = 60.0000
2014-12-20T20:29:06.374924 tid5452 [dbg,Core] Did set property: Cobolt-Max Power = 60.0000
2014-12-20T20:29:06.374924 tid5452 [dbg,Core] Will set property: Cobolt-Port = COM3
2014-12-20T20:29:06.374924 tid5452 [dbg,Core] Did set property: Cobolt-Port = COM3
2014-12-20T20:29:06.374924 tid5452 [dbg,Core] Will set property: Picard Twister-Serial Number = 37
2014-12-20T20:29:06.392925 tid5452 [dbg,Core] Did set property: Picard Twister-Serial Number = 37
2014-12-20T20:29:06.392925 tid5452 [dbg,Core] Will set property: Picard Z Stage-Serial Number = 140
2014-12-20T20:29:06.412926 tid5452 [dbg,Core] Did set property: Picard Z Stage-Serial Number = 140
2014-12-20T20:29:06.412926 tid5452 [dbg,Core] Will set property: Picard XY Stage-Serial Number (X) = 139
2014-12-20T20:29:06.420926 tid5452 [dbg,Core] Did set property: Picard XY Stage-Serial Number (X) = 139
2014-12-20T20:29:06.420926 tid5452 [dbg,Core] Will set property: Picard XY Stage-Serial Number (Y) = 141
2014-12-20T20:29:06.480930 tid5452 [dbg,Core] Did set property: Picard XY Stage-Serial Number (Y) = 141
2014-12-20T20:29:06.480930 tid5452 [dbg,Core] Will set property: Picard XY Stage-X-Max = 8000
2014-12-20T20:29:06.480930 tid5452 [dbg,Core] Did set property: Picard XY Stage-X-Max = 8000
2014-12-20T20:29:06.480930 tid5452 [dbg,Core] Will set property: Picard XY Stage-X-Min = 1
2014-12-20T20:29:06.480930 tid5452 [dbg,Core] Did set property: Picard XY Stage-X-Min = 1
2014-12-20T20:29:06.480930 tid5452 [dbg,Core] Will set property: Picard XY Stage-Y-Max = 8000
2014-12-20T20:29:06.480930 tid5452 [dbg,Core] Did set property: Picard XY Stage-Y-Max = 8000
2014-12-20T20:29:06.480930 tid5452 [dbg,Core] Will set property: Picard XY Stage-Y-Min = 1
2014-12-20T20:29:06.480930 tid5452 [dbg,Core] Did set property: Picard XY Stage-Y-Min = 1
2014-12-20T20:29:06.480930 tid5452 [dbg,Core] Will set property: COM3-AnswerTimeout = 500.0000
2014-12-20T20:29:06.480930 tid5452 [dbg,Core] Did set property: COM3-AnswerTimeout = 500.0000
2014-12-20T20:29:06.480930 tid5452 [dbg,Core] Will set property: COM3-BaudRate = 115200
2014-12-20T20:29:06.480930 tid5452 [dbg,Core] Did set property: COM3-BaudRate = 115200
2014-12-20T20:29:06.480930 tid5452 [dbg,Core] Will set property: COM3-DelayBetweenCharsMs = 0.0000
2014-12-20T20:29:06.480930 tid5452 [dbg,Core] Did set property: COM3-DelayBetweenCharsMs = 0.0000
2014-12-20T20:29:06.480930 tid5452 [dbg,Core] Will set property: COM3-Handshaking = Off
2014-12-20T20:29:06.480930 tid5452 [dbg,Core] Did set property: COM3-Handshaking = Off
2014-12-20T20:29:06.480930 tid5452 [dbg,Core] Will set property: COM3-Parity = None
2014-12-20T20:29:06.480930 tid5452 [dbg,Core] Did set property: COM3-Parity = None
2014-12-20T20:29:06.480930 tid5452 [dbg,Core] Will set property: COM3-StopBits = 1
2014-12-20T20:29:06.480930 tid5452 [dbg,Core] Did set property: COM3-StopBits = 1
2014-12-20T20:29:06.480930 tid5452 [dbg,Core] Will set property: COM3-Verbose = 1
2014-12-20T20:29:06.480930 tid5452 [dbg,Core] Did set property: COM3-Verbose = 1
2014-12-20T20:29:06.480930 tid5452 [dbg,Core] Will set property: Core-Initialize = 1
2014-12-20T20:29:06.480930 tid5452 [IFO,Core] Will initialize 6 devices
2014-12-20T20:29:06.480930 tid5452 [IFO,Core] Will initialize device COM3
2014-12-20T20:29:06.488930 tid5452 [dbg,dev:COM3] Attempting to set baud of COM3 to 115200
2014-12-20T20:29:06.497931 tid5452 [dbg,dev:COM3] Attempting to set flow of COM3 to none
2014-12-20T20:29:06.506931 tid5452 [dbg,dev:COM3] Attempting to set parity of COM3 to none
2014-12-20T20:29:06.515932 tid5452 [dbg,dev:COM3] Attempting to set stopBits of COM3 to 1
2014-12-20T20:29:06.533933 tid5452 [IFO,Core] Did initialize device COM3
2014-12-20T20:29:06.533933 tid5452 [IFO,Core] Will initialize device Cobolt
2014-12-20T20:29:06.533933 tid5452 [dbg,dev:COM3] SetCommand -> i? \r
2014-12-20T20:29:06.733944 tid5452 [dbg,dev:COM3] GetAnswer # retries = 201
2014-12-20T20:29:06.933956 tid5452 [dbg,dev:COM3] GetAnswer # retries = 402
2014-12-20T20:29:07.033961 tid5452 [IFO,dev:COM3] TERM_TIMEOUT error occured!
2014-12-20T20:29:07.033961 tid5452 [ERR,Core] Error occurred in device COM3: Error in device COM3: Error code 107 (6b hex).
2014-12-20T20:29:07.033961 tid5452 [ERR,Core] Error occurred in device Cobolt: Error in device Cobolt: Serial command failed. Is the device connected to the serial port?.
2014-12-20T20:29:07.033961 tid5452 [dbg,Core] Will set property: Core-Camera = OrcaFlash
2014-12-20T20:29:07.033961 tid5452 [dbg,Core] Will set property: Core-Shutter = Cobolt
2014-12-20T20:29:07.033961 tid5452 [dbg,Core] Will set property: Core-Focus = Picard Z Stage
2014-12-20T20:29:07.033961 tid5452 [dbg,Core] Will set property: Core-AutoShutter = 1
2014-12-20T20:29:07.033961 tid5452 [dbg,Core] Autoshutter turned on
2014-12-20T20:29:07.033961 tid5452 [dbg,App] Notification for Device: Core Property: AutoShutter changed to value: 1
2014-12-20T20:29:07.033961 tid5452 [dbg,Core] Did set property: Core-AutoShutter = 1
2014-12-20T20:29:07.035961 tid5452 [IFO,App]
[ ] java.lang.Exception: Line 38: Property,Core,Initialize,1
[ ] Error in device Cobolt: Serial command failed. Is the device connected to the serial port?.
[ ]
[ ] Line 43: Property,Core,Camera,OrcaFlash
[ ] Cannot set Core property Camera to invalid value "OrcaFlash"
[ ]
[ ] Line 44: Property,Core,Shutter,Cobolt
[ ] Cannot set Core property Shutter to invalid value "Cobolt"
[ ]
[ ] Line 45: Property,Core,Focus,Picard Z Stage
[ ] Cannot set Core property Focus to invalid value "Picard Z Stage"
[ ]
[ ] in Thread[AWT-EventQueue-0,6,main]
[ ] at mmcorej.MMCoreJJNI.CMMCore_loadSystemConfiguration(Native Method)
[ ] at mmcorej.CMMCore.loadSystemConfiguration(CMMCore.java:313)
[ ] at org.micromanager.MMStudioMainFrame.loadSystemConfiguration(MMStudioMainFrame.java:3151)
[ ] at org.micromanager.MMStudioMainFrame.access$2200(MMStudioMainFrame.java:157)
[ ] at org.micromanager.MMStudioMainFrame$1.windowOpened(MMStudioMainFrame.java:560)
[ ] at java.awt.AWTEventMulticaster.windowOpened(AWTEventMulticaster.java:322)
[ ] at java.awt.Window.processWindowEvent(Window.java:1862)
[ ] at javax.swing.JFrame.processWindowEvent(JFrame.java:274)
[ ] at java.awt.Window.processEvent(Window.java:1823)
[ ] at java.awt.Component.dispatchEventImpl(Component.java:4652)
[ ] at java.awt.Container.dispatchEventImpl(Container.java:2099)
[ ] at java.awt.Window.dispatchEventImpl(Window.java:2478)
[ ] at java.awt.Component.dispatchEvent(Component.java:4482)
[ ] at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:644)
[ ] at java.awt.EventQueue.access$000(EventQueue.java:85)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:603)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:601)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:617)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:615)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.awt.EventQueue.dispatchEvent(EventQueue.java:614)
[ ] at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269)
[ ] at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184)
[ ] at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161)
[ ] at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
2014-12-20T20:29:11.013189 tid5452 [dbg,Core] Will update system state cache
2014-12-20T20:29:11.013189 tid5452 [dbg,dev:COM3] SetCommand -> i? \r
2014-12-20T20:29:11.213200 tid5452 [dbg,dev:COM3] GetAnswer # retries = 201
2014-12-20T20:29:11.413212 tid5452 [dbg,dev:COM3] GetAnswer # retries = 401
2014-12-20T20:29:11.513218 tid5452 [IFO,dev:COM3] TERM_TIMEOUT error occured!
2014-12-20T20:29:11.513218 tid5452 [ERR,Core] Error occurred in device COM3: Error in device COM3: Error code 107 (6b hex).
2014-12-20T20:29:11.513218 tid5452 [dbg,dev:COM3] SetCommand -> f? \r
2014-12-20T20:29:11.713229 tid5452 [dbg,dev:COM3] GetAnswer # retries = 201
2014-12-20T20:29:11.913240 tid5452 [dbg,dev:COM3] GetAnswer # retries = 402
2014-12-20T20:29:12.013246 tid5452 [IFO,dev:COM3] TERM_TIMEOUT error occured!
2014-12-20T20:29:12.013246 tid5452 [ERR,Core] Error occurred in device COM3: Error in device COM3: Error code 107 (6b hex).
2014-12-20T20:29:12.013246 tid5452 [dbg,dev:COM3] SetCommand -> hrs? \r
2014-12-20T20:29:12.213258 tid5452 [dbg,dev:COM3] GetAnswer # retries = 201
2014-12-20T20:29:12.413269 tid5452 [dbg,dev:COM3] GetAnswer # retries = 402
2014-12-20T20:29:12.513275 tid5452 [IFO,dev:COM3] TERM_TIMEOUT error occured!
2014-12-20T20:29:12.513275 tid5452 [ERR,Core] Error occurred in device COM3: Error in device COM3: Error code 107 (6b hex).
2014-12-20T20:29:12.513275 tid5452 [dbg,dev:COM3] SetCommand -> ilk? \r
2014-12-20T20:29:12.713286 tid5452 [dbg,dev:COM3] GetAnswer # retries = 201
2014-12-20T20:29:12.913298 tid5452 [dbg,dev:COM3] GetAnswer # retries = 402
2014-12-20T20:29:13.013303 tid5452 [IFO,dev:COM3] TERM_TIMEOUT error occured!
2014-12-20T20:29:13.013303 tid5452 [ERR,Core] Error occurred in device COM3: Error in device COM3: Error code 107 (6b hex).
2014-12-20T20:29:13.013303 tid5452 [dbg,dev:COM3] SetCommand -> l? \r
2014-12-20T20:29:13.213315 tid5452 [dbg,dev:COM3] GetAnswer # retries = 201
2014-12-20T20:29:13.413326 tid5452 [dbg,dev:COM3] GetAnswer # retries = 402
2014-12-20T20:29:13.513332 tid5452 [IFO,dev:COM3] TERM_TIMEOUT error occured!
2014-12-20T20:29:13.513332 tid5452 [ERR,Core] Error occurred in device COM3: Error in device COM3: Error code 107 (6b hex).
2014-12-20T20:29:13.513332 tid5452 [dbg,dev:COM3] SetCommand -> l? \r
2014-12-20T20:29:13.713343 tid5452 [dbg,dev:COM3] GetAnswer # retries = 199
2014-12-20T20:29:13.913355 tid5452 [dbg,dev:COM3] GetAnswer # retries = 400
2014-12-20T20:29:14.013361 tid5452 [IFO,dev:COM3] TERM_TIMEOUT error occured!
2014-12-20T20:29:14.013361 tid5452 [ERR,Core] Error occurred in device COM3: Error in device COM3: Error code 107 (6b hex).
2014-12-20T20:29:14.013361 tid5452 [dbg,dev:COM3] SetCommand -> pa? \r
2014-12-20T20:29:14.213372 tid5452 [dbg,dev:COM3] GetAnswer # retries = 201
2014-12-20T20:29:14.413383 tid5452 [dbg,dev:COM3] GetAnswer # retries = 402
2014-12-20T20:29:14.513389 tid5452 [IFO,dev:COM3] TERM_TIMEOUT error occured!
2014-12-20T20:29:14.513389 tid5452 [ERR,Core] Error occurred in device COM3: Error in device COM3: Error code 107 (6b hex).
2014-12-20T20:29:14.513389 tid5452 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:29:14.713401 tid5452 [dbg,dev:COM3] GetAnswer # retries = 201
2014-12-20T20:29:14.913412 tid5452 [dbg,dev:COM3] GetAnswer # retries = 402
2014-12-20T20:29:15.013418 tid5452 [IFO,dev:COM3] TERM_TIMEOUT error occured!
2014-12-20T20:29:15.013418 tid5452 [ERR,Core] Error occurred in device COM3: Error in device COM3: Error code 107 (6b hex).
2014-12-20T20:29:15.013418 tid5452 [dbg,dev:COM3] SetCommand -> sn? \r
2014-12-20T20:29:15.213429 tid5452 [dbg,dev:COM3] GetAnswer # retries = 201
2014-12-20T20:29:15.413441 tid5452 [dbg,dev:COM3] GetAnswer # retries = 402
2014-12-20T20:29:15.513446 tid5452 [IFO,dev:COM3] TERM_TIMEOUT error occured!
2014-12-20T20:29:15.513446 tid5452 [ERR,Core] Error occurred in device COM3: Error in device COM3: Error code 107 (6b hex).
2014-12-20T20:29:15.513446 tid5452 [dbg,dev:COM3] SetCommand -> ver? \r
2014-12-20T20:29:15.713458 tid5452 [dbg,dev:COM3] GetAnswer # retries = 201
2014-12-20T20:29:15.913469 tid5452 [dbg,dev:COM3] GetAnswer # retries = 402
2014-12-20T20:29:16.013475 tid5452 [IFO,dev:COM3] TERM_TIMEOUT error occured!
2014-12-20T20:29:16.013475 tid5452 [ERR,Core] Error occurred in device COM3: Error in device COM3: Error code 107 (6b hex).
2014-12-20T20:29:16.013475 tid5452 [IFO,Core] Did update system state cache
2014-12-20T20:29:16.016475 tid5452 [IFO,App] Startup script file (C:\Users\User\Desktop\OpenSPIM.app\MMStartup.bsh) not present.
2014-12-20T20:29:35.028563 tid5452 [IFO,App] [UI] JButton "Hide Details" clicked in ProgressDialog.
2014-12-20T20:41:21.238262 tid5452 [IFO,App] [UI] JButton "Hide Details" clicked in ProgressDialog.
2014-12-20T20:51:44.257556 tid5452 [dbg,Core] Waiting for device COM3...
2014-12-20T20:51:44.257556 tid5452 [dbg,Core] Finished waiting for device COM3
2014-12-20T20:51:44.257556 tid5452 [dbg,Core] Waiting for device Cobolt...
2014-12-20T20:51:44.257556 tid5452 [dbg,Core] Finished waiting for device Cobolt
2014-12-20T20:51:44.257556 tid5452 [dbg,Core] Waiting for device OrcaFlash...
2014-12-20T20:51:44.257556 tid5452 [dbg,Core] Finished waiting for device OrcaFlash
2014-12-20T20:51:44.257556 tid5452 [dbg,Core] Waiting for device Picard Twister...
2014-12-20T20:51:44.257556 tid5452 [dbg,Core] Finished waiting for device Picard Twister
2014-12-20T20:51:44.257556 tid5452 [dbg,Core] Waiting for device Picard Z Stage...
2014-12-20T20:51:44.257556 tid5452 [dbg,Core] Finished waiting for device Picard Z Stage
2014-12-20T20:51:44.257556 tid5452 [dbg,Core] Waiting for device Picard XY Stage...
2014-12-20T20:51:44.257556 tid5452 [dbg,Core] Finished waiting for device Picard XY Stage
2014-12-20T20:51:44.257556 tid5452 [dbg,Core] Will unload all devices
2014-12-20T20:51:44.475957 tid5452 [IFO,Core] Did unload all devices
2014-12-20T20:51:44.475957 tid5452 [IFO,Core] System reset
2014-12-20T20:51:44.475957 tid5452 [IFO,Core] Core session ended
-------------- next part --------------
2014-12-20T20:27:08.498182 tid5872 [IFO,LogManager] Enabled primary log file C:\Users\User\Desktop\OpenSPIM.app\CoreLogs\CoreLog20141220T202708_pid5160.txt
2014-12-20T20:27:08.498182 tid5872 [IFO,LogManager] Switching primary log level from info to trace
2014-12-20T20:27:08.508182 tid5872 [IFO,LogManager] Switched primary log level from info to trace
2014-12-20T20:27:08.508182 tid5872 [IFO,App] User: User
2014-12-20T20:27:08.509182 tid5872 [IFO,App] Host: OpenSPIM01
2014-12-20T20:27:08.509182 tid5872 [IFO,App] MM Studio version: 1.4.x dev
2014-12-20T20:27:08.509182 tid5872 [IFO,App] MMCore version 4.0.4
2014-12-20T20:27:08.509182 tid5872 [IFO,App] Device API version 60, Module API version 10
2014-12-20T20:27:08.509182 tid5872 [IFO,App] Operating System: Windows 7 (x86) 6.1
2014-12-20T20:27:08.509182 tid5872 [IFO,App] JVM: Java HotSpot(TM) Client VM, version 1.6.0_24, 32-bit
2014-12-20T20:27:08.511182 tid5872 [dbg,Core] Will set circular buffer size to 25 MB
2014-12-20T20:27:08.511182 tid5872 [dbg,Core] Did set circular buffer size to 25 MB
2014-12-20T20:27:08.636189 tid4388 [IFO,App] Attempting to install plugin spim.SPIMAcquisition
2014-12-20T20:27:08.652190 tid4388 [IFO,App] Attempting to install autofocus plugin Autofocus
2014-12-20T20:27:08.654190 tid4388 [IFO,App] Attempting to install autofocus plugin AutofocusDuo
2014-12-20T20:27:08.655190 tid4388 [IFO,App] Attempting to install autofocus plugin AutofocusTB
2014-12-20T20:27:08.655190 tid4388 [IFO,App] Attempting to install autofocus plugin OughtaFocus
2014-12-20T20:27:14.365517 tid5872 [dbg,Core] Will set property: Core-Initialize = 0
2014-12-20T20:27:14.365517 tid5872 [dbg,Core] Will unload all devices
2014-12-20T20:27:14.365517 tid5872 [IFO,Core] Did unload all devices
2014-12-20T20:27:14.365517 tid5872 [dbg,App] Notification for Device: Core Property: Initialize changed to value: 0
2014-12-20T20:27:14.367517 tid5872 [dbg,Core] Did set property: Core-Initialize = 0
2014-12-20T20:27:14.367517 tid5872 [dbg,Core] Will load device COM3 from SerialManager
2014-12-20T20:27:14.369517 tid5872 [IFO,Core] Did load device COM3 from SerialManager; label = COM3
2014-12-20T20:27:14.369517 tid5872 [dbg,Core] Will load device Cobolt from Cobolt
2014-12-20T20:27:14.370517 tid5872 [IFO,Core] Did load device Cobolt from Cobolt; label = Cobolt
2014-12-20T20:27:14.370517 tid5872 [dbg,Core] Will load device HamamatsuHam_DCAM from HamamatsuHam
2014-12-20T20:27:14.372517 tid5872 [IFO,Core] Did load device HamamatsuHam_DCAM from HamamatsuHam; label = OrcaFlash
2014-12-20T20:27:14.372517 tid5872 [dbg,Core] Will load device Picard Twister from PicardStage
2014-12-20T20:27:14.375518 tid5872 [IFO,Core] Did load device Picard Twister from PicardStage; label = Picard Twister
2014-12-20T20:27:14.375518 tid5872 [dbg,Core] Will load device Picard Z Stage from PicardStage
2014-12-20T20:27:14.375518 tid5872 [IFO,Core] Did load device Picard Z Stage from PicardStage; label = Picard Z Stage
2014-12-20T20:27:14.375518 tid5872 [dbg,Core] Will load device Picard XY Stage from PicardStage
2014-12-20T20:27:14.375518 tid5872 [IFO,Core] Did load device Picard XY Stage from PicardStage; label = Picard XY Stage
2014-12-20T20:27:14.375518 tid5872 [dbg,Core] Will set property: Cobolt-Max Power = 60.0000
2014-12-20T20:27:14.375518 tid5872 [dbg,Core] Did set property: Cobolt-Max Power = 60.0000
2014-12-20T20:27:14.375518 tid5872 [dbg,Core] Will set property: Cobolt-Port = COM3
2014-12-20T20:27:14.375518 tid5872 [dbg,Core] Did set property: Cobolt-Port = COM3
2014-12-20T20:27:14.375518 tid5872 [dbg,Core] Will set property: Picard Twister-Serial Number = 37
2014-12-20T20:27:14.393519 tid5872 [dbg,Core] Did set property: Picard Twister-Serial Number = 37
2014-12-20T20:27:14.393519 tid5872 [dbg,Core] Will set property: Picard Z Stage-Serial Number = 140
2014-12-20T20:27:14.413520 tid5872 [dbg,Core] Did set property: Picard Z Stage-Serial Number = 140
2014-12-20T20:27:14.413520 tid5872 [dbg,Core] Will set property: Picard XY Stage-Serial Number (X) = 139
2014-12-20T20:27:14.421520 tid5872 [dbg,Core] Did set property: Picard XY Stage-Serial Number (X) = 139
2014-12-20T20:27:14.421520 tid5872 [dbg,Core] Will set property: Picard XY Stage-Serial Number (Y) = 141
2014-12-20T20:27:14.481524 tid5872 [dbg,Core] Did set property: Picard XY Stage-Serial Number (Y) = 141
2014-12-20T20:27:14.481524 tid5872 [dbg,Core] Will set property: Picard XY Stage-X-Max = 8000
2014-12-20T20:27:14.481524 tid5872 [dbg,Core] Did set property: Picard XY Stage-X-Max = 8000
2014-12-20T20:27:14.481524 tid5872 [dbg,Core] Will set property: Picard XY Stage-X-Min = 1
2014-12-20T20:27:14.481524 tid5872 [dbg,Core] Did set property: Picard XY Stage-X-Min = 1
2014-12-20T20:27:14.481524 tid5872 [dbg,Core] Will set property: Picard XY Stage-Y-Max = 8000
2014-12-20T20:27:14.481524 tid5872 [dbg,Core] Did set property: Picard XY Stage-Y-Max = 8000
2014-12-20T20:27:14.481524 tid5872 [dbg,Core] Will set property: Picard XY Stage-Y-Min = 1
2014-12-20T20:27:14.481524 tid5872 [dbg,Core] Did set property: Picard XY Stage-Y-Min = 1
2014-12-20T20:27:14.481524 tid5872 [dbg,Core] Will set property: COM3-AnswerTimeout = 500.0000
2014-12-20T20:27:14.481524 tid5872 [dbg,Core] Did set property: COM3-AnswerTimeout = 500.0000
2014-12-20T20:27:14.481524 tid5872 [dbg,Core] Will set property: COM3-BaudRate = 115200
2014-12-20T20:27:14.481524 tid5872 [dbg,Core] Did set property: COM3-BaudRate = 115200
2014-12-20T20:27:14.481524 tid5872 [dbg,Core] Will set property: COM3-DelayBetweenCharsMs = 0.0000
2014-12-20T20:27:14.481524 tid5872 [dbg,Core] Did set property: COM3-DelayBetweenCharsMs = 0.0000
2014-12-20T20:27:14.481524 tid5872 [dbg,Core] Will set property: COM3-Handshaking = Off
2014-12-20T20:27:14.481524 tid5872 [dbg,Core] Did set property: COM3-Handshaking = Off
2014-12-20T20:27:14.481524 tid5872 [dbg,Core] Will set property: COM3-Parity = None
2014-12-20T20:27:14.481524 tid5872 [dbg,Core] Did set property: COM3-Parity = None
2014-12-20T20:27:14.481524 tid5872 [dbg,Core] Will set property: COM3-StopBits = 1
2014-12-20T20:27:14.481524 tid5872 [dbg,Core] Did set property: COM3-StopBits = 1
2014-12-20T20:27:14.481524 tid5872 [dbg,Core] Will set property: COM3-Verbose = 1
2014-12-20T20:27:14.481524 tid5872 [dbg,Core] Did set property: COM3-Verbose = 1
2014-12-20T20:27:14.481524 tid5872 [dbg,Core] Will set property: Core-Initialize = 1
2014-12-20T20:27:14.481524 tid5872 [IFO,Core] Will initialize 6 devices
2014-12-20T20:27:14.481524 tid5872 [IFO,Core] Will initialize device COM3
2014-12-20T20:27:14.489524 tid5872 [dbg,dev:COM3] Attempting to set baud of COM3 to 115200
2014-12-20T20:27:14.499525 tid5872 [dbg,dev:COM3] Attempting to set flow of COM3 to none
2014-12-20T20:27:14.508525 tid5872 [dbg,dev:COM3] Attempting to set parity of COM3 to none
2014-12-20T20:27:14.517526 tid5872 [dbg,dev:COM3] Attempting to set stopBits of COM3 to 1
2014-12-20T20:27:14.535527 tid5872 [IFO,Core] Did initialize device COM3
2014-12-20T20:27:14.535527 tid5872 [IFO,Core] Will initialize device Cobolt
2014-12-20T20:27:14.535527 tid5872 [dbg,dev:COM3] SetCommand -> i? \r
2014-12-20T20:27:14.545527 tid5872 [dbg,dev:COM3] GetAnswer # retries = 11
2014-12-20T20:27:14.545527 tid5872 [dbg,dev:COM3] GetAnswer <- 0.0\r
2014-12-20T20:27:14.545527 tid5872 [dbg,dev:COM3] SetCommand -> f? \r
2014-12-20T20:27:14.555528 tid5872 [dbg,dev:COM3] GetAnswer # retries = 11
2014-12-20T20:27:14.555528 tid5872 [dbg,dev:COM3] GetAnswer <- \n0\r
2014-12-20T20:27:14.555528 tid5872 [dbg,dev:COM3] SetCommand -> hrs? \r
2014-12-20T20:27:14.565529 tid5872 [dbg,dev:COM3] GetAnswer # retries = 11
2014-12-20T20:27:14.565529 tid5872 [dbg,dev:COM3] GetAnswer <- \n114.11\r
2014-12-20T20:27:14.565529 tid5872 [dbg,dev:COM3] SetCommand -> ilk? \r
2014-12-20T20:27:14.575529 tid5872 [dbg,dev:COM3] GetAnswer # retries = 11
2014-12-20T20:27:14.575529 tid5872 [dbg,dev:COM3] GetAnswer <- \n0\r
2014-12-20T20:27:14.575529 tid5872 [dbg,dev:COM3] SetCommand -> l? \r
2014-12-20T20:27:14.585530 tid5872 [dbg,dev:COM3] GetAnswer # retries = 11
2014-12-20T20:27:14.585530 tid5872 [dbg,dev:COM3] GetAnswer <- \n0\r
2014-12-20T20:27:14.585530 tid5872 [dbg,dev:COM3] SetCommand -> l? \r
2014-12-20T20:27:14.595530 tid5872 [dbg,dev:COM3] GetAnswer # retries = 11
2014-12-20T20:27:14.595530 tid5872 [dbg,dev:COM3] GetAnswer <- \n0\r
2014-12-20T20:27:14.595530 tid5872 [dbg,dev:COM3] SetCommand -> pa? \r
2014-12-20T20:27:14.605531 tid5872 [dbg,dev:COM3] GetAnswer # retries = 11
2014-12-20T20:27:14.605531 tid5872 [dbg,dev:COM3] GetAnswer <- \n-0.0000\r
2014-12-20T20:27:14.605531 tid5872 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:27:14.615531 tid5872 [dbg,dev:COM3] GetAnswer # retries = 11
2014-12-20T20:27:14.615531 tid5872 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-20T20:27:14.615531 tid5872 [dbg,dev:COM3] SetCommand -> sn? \r
2014-12-20T20:27:14.625532 tid5872 [dbg,dev:COM3] GetAnswer # retries = 11
2014-12-20T20:27:14.625532 tid5872 [dbg,dev:COM3] GetAnswer <- \n488006152\r
2014-12-20T20:27:14.625532 tid5872 [dbg,dev:COM3] SetCommand -> ver? \r
2014-12-20T20:27:14.635533 tid5872 [dbg,dev:COM3] GetAnswer # retries = 11
2014-12-20T20:27:14.635533 tid5872 [dbg,dev:COM3] GetAnswer <- \n6.65\r
2014-12-20T20:27:14.635533 tid5872 [dbg,dev:COM3] SetCommand -> l0\r
2014-12-20T20:27:14.645533 tid5872 [dbg,dev:COM3] GetAnswer # retries = 11
2014-12-20T20:27:14.645533 tid5872 [dbg,dev:COM3] GetAnswer <- \nOK\r
2014-12-20T20:27:14.645533 tid5872 [IFO,Core] Did initialize device Cobolt
2014-12-20T20:27:14.645533 tid5872 [IFO,Core] Default shutter set to Cobolt
2014-12-20T20:27:14.645533 tid5872 [IFO,Core] Will initialize device OrcaFlash
2014-12-20T20:27:15.774598 tid5872 [IFO,Core] Did initialize device OrcaFlash
2014-12-20T20:27:15.774598 tid5872 [IFO,Core] Default camera set to OrcaFlash
2014-12-20T20:27:15.774598 tid5872 [IFO,Core] Will initialize device Picard Twister
2014-12-20T20:27:15.801599 tid5872 [IFO,Core] Did initialize device Picard Twister
2014-12-20T20:27:15.801599 tid5872 [IFO,Core] Will initialize device Picard Z Stage
2014-12-20T20:27:15.821600 tid5872 [IFO,Core] Did initialize device Picard Z Stage
2014-12-20T20:27:15.821600 tid5872 [IFO,Core] Will initialize device Picard XY Stage
2014-12-20T20:27:15.857602 tid5872 [IFO,Core] Did initialize device Picard XY Stage
2014-12-20T20:27:15.857602 tid5872 [IFO,Core] Default xy stage set to Picard XY Stage
2014-12-20T20:27:15.857602 tid5872 [IFO,Core] Finished initializing 6 devices
2014-12-20T20:27:15.857602 tid5872 [dbg,App] Notification for Device: Core Property: Initialize changed to value: 1
2014-12-20T20:27:15.857602 tid5872 [dbg,Core] Did set property: Core-Initialize = 1
2014-12-20T20:27:15.857602 tid5872 [dbg,Core] Will set property: Core-Camera = OrcaFlash
2014-12-20T20:27:15.857602 tid5872 [IFO,Core] Default camera set to OrcaFlash
2014-12-20T20:27:15.857602 tid5872 [dbg,App] Notification for Device: Core Property: Camera changed to value: OrcaFlash
2014-12-20T20:27:15.857602 tid5872 [dbg,Core] Did set property: Core-Camera = OrcaFlash
2014-12-20T20:27:15.857602 tid5872 [dbg,Core] Will set property: Core-Shutter = Cobolt
2014-12-20T20:27:15.857602 tid5872 [dbg,App] Notification for Device: Core Property: Shutter changed to value: Cobolt
2014-12-20T20:27:15.857602 tid5872 [dbg,Core] Did set property: Core-Shutter = Cobolt
2014-12-20T20:27:15.857602 tid5872 [dbg,Core] Will set property: Core-Focus = Picard Z Stage
2014-12-20T20:27:15.857602 tid5872 [IFO,Core] Default stage set to Picard Z Stage
2014-12-20T20:27:15.857602 tid5872 [dbg,App] Notification for Device: Core Property: Focus changed to value: Picard Z Stage
2014-12-20T20:27:15.857602 tid5872 [dbg,Core] Did set property: Core-Focus = Picard Z Stage
2014-12-20T20:27:15.857602 tid5872 [dbg,Core] Will set property: Core-AutoShutter = 1
2014-12-20T20:27:15.857602 tid5872 [dbg,Core] Autoshutter turned on
2014-12-20T20:27:15.857602 tid5872 [dbg,App] Notification for Device: Core Property: AutoShutter changed to value: 1
2014-12-20T20:27:15.857602 tid5872 [dbg,Core] Did set property: Core-AutoShutter = 1
2014-12-20T20:27:15.857602 tid5872 [dbg,Core] Waiting for device COM3...
2014-12-20T20:27:15.857602 tid5872 [dbg,Core] Finished waiting for device COM3
2014-12-20T20:27:15.857602 tid5872 [dbg,Core] Waiting for device Cobolt...
2014-12-20T20:27:15.857602 tid5872 [dbg,Core] Finished waiting for device Cobolt
2014-12-20T20:27:15.857602 tid5872 [dbg,Core] Waiting for device OrcaFlash...
2014-12-20T20:27:15.857602 tid5872 [dbg,Core] Finished waiting for device OrcaFlash
2014-12-20T20:27:15.857602 tid5872 [dbg,Core] Waiting for device Picard Twister...
2014-12-20T20:27:15.857602 tid5872 [dbg,Core] Finished waiting for device Picard Twister
2014-12-20T20:27:15.857602 tid5872 [dbg,Core] Waiting for device Picard Z Stage...
2014-12-20T20:27:15.857602 tid5872 [dbg,Core] Finished waiting for device Picard Z Stage
2014-12-20T20:27:15.857602 tid5872 [dbg,Core] Waiting for device Picard XY Stage...
2014-12-20T20:27:15.889604 tid5872 [dbg,Core] Finished waiting for device Picard XY Stage
2014-12-20T20:27:15.889604 tid5872 [dbg,Core] Will update system state cache
2014-12-20T20:27:15.889604 tid5872 [dbg,dev:COM3] SetCommand -> i? \r
2014-12-20T20:27:15.895605 tid5872 [dbg,dev:COM3] GetAnswer # retries = 7
2014-12-20T20:27:15.895605 tid5872 [dbg,dev:COM3] GetAnswer <- \n0.0\r
2014-12-20T20:27:15.895605 tid5872 [dbg,dev:COM3] SetCommand -> f? \r
2014-12-20T20:27:15.904605 tid5872 [dbg,dev:COM3] GetAnswer # retries = 10
2014-12-20T20:27:15.904605 tid5872 [dbg,dev:COM3] GetAnswer <- \n0\r
2014-12-20T20:27:15.904605 tid5872 [dbg,dev:COM3] SetCommand -> hrs? \r
2014-12-20T20:27:15.915606 tid5872 [dbg,dev:COM3] GetAnswer # retries = 12
2014-12-20T20:27:15.915606 tid5872 [dbg,dev:COM3] GetAnswer <- \n114.11\r
2014-12-20T20:27:15.915606 tid5872 [dbg,dev:COM3] SetCommand -> ilk? \r
2014-12-20T20:27:15.925606 tid5872 [dbg,dev:COM3] GetAnswer # retries = 11
2014-12-20T20:27:15.925606 tid5872 [dbg,dev:COM3] GetAnswer <- \n0\r
2014-12-20T20:27:15.925606 tid5872 [dbg,dev:COM3] SetCommand -> l? \r
2014-12-20T20:27:15.935607 tid5872 [dbg,dev:COM3] GetAnswer # retries = 11
2014-12-20T20:27:15.935607 tid5872 [dbg,dev:COM3] GetAnswer <- \n0\r
2014-12-20T20:27:15.935607 tid5872 [dbg,dev:COM3] SetCommand -> l? \r
2014-12-20T20:27:15.945607 tid5872 [dbg,dev:COM3] GetAnswer # retries = 11
2014-12-20T20:27:15.945607 tid5872 [dbg,dev:COM3] GetAnswer <- \n0\r
2014-12-20T20:27:15.945607 tid5872 [dbg,dev:COM3] SetCommand -> pa? \r
2014-12-20T20:27:15.955608 tid5872 [dbg,dev:COM3] GetAnswer # retries = 11
2014-12-20T20:27:15.955608 tid5872 [dbg,dev:COM3] GetAnswer <- \n-0.0000\r
2014-12-20T20:27:15.955608 tid5872 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:27:15.965609 tid5872 [dbg,dev:COM3] GetAnswer # retries = 11
2014-12-20T20:27:15.965609 tid5872 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-20T20:27:15.965609 tid5872 [dbg,dev:COM3] SetCommand -> sn? \r
2014-12-20T20:27:15.974609 tid5872 [dbg,dev:COM3] GetAnswer # retries = 10
2014-12-20T20:27:15.974609 tid5872 [dbg,dev:COM3] GetAnswer <- \n488006152\r
2014-12-20T20:27:15.974609 tid5872 [dbg,dev:COM3] SetCommand -> ver? \r
2014-12-20T20:27:15.985610 tid5872 [dbg,dev:COM3] GetAnswer # retries = 12
2014-12-20T20:27:15.985610 tid5872 [dbg,dev:COM3] GetAnswer <- \n6.65\r
2014-12-20T20:27:15.985610 tid5872 [IFO,Core] Did update system state cache
2014-12-20T20:27:16.018612 tid5872 [dbg,dev:COM3] SetCommand -> l? \r
2014-12-20T20:27:16.025612 tid5872 [dbg,dev:COM3] GetAnswer # retries = 8
2014-12-20T20:27:16.025612 tid5872 [dbg,dev:COM3] GetAnswer <- \n0\r
2014-12-20T20:27:16.025612 tid5872 [ERR,Core] Error occurred in device CMMCore::getShutterOpen(): Error in device Cobolt: Invalid state (position) requested.
2014-12-20T20:27:16.025612 tid5872 [IFO,App]
[ ] java.lang.Exception: Error in device Cobolt: Invalid state (position) requested. in Thread[AWT-EventQueue-0,6,main]
[ ] at mmcorej.MMCoreJJNI.CMMCore_getShutterOpen__SWIG_0(Native Method)
[ ] at mmcorej.CMMCore.getShutterOpen(CMMCore.java:885)
[ ] at org.micromanager.MMStudioMainFrame.updateGUI(MMStudioMainFrame.java:2812)
[ ] at org.micromanager.MMStudioMainFrame.updateGUI(MMStudioMainFrame.java:2782)
[ ] at org.micromanager.MMStudioMainFrame.initializeGUI(MMStudioMainFrame.java:2701)
[ ] at org.micromanager.MMStudioMainFrame.loadSystemConfiguration(MMStudioMainFrame.java:3165)
[ ] at org.micromanager.MMStudioMainFrame.access$2200(MMStudioMainFrame.java:157)
[ ] at org.micromanager.MMStudioMainFrame$1.windowOpened(MMStudioMainFrame.java:560)
[ ] at java.awt.AWTEventMulticaster.windowOpened(AWTEventMulticaster.java:322)
[ ] at java.awt.Window.processWindowEvent(Window.java:1862)
[ ] at javax.swing.JFrame.processWindowEvent(JFrame.java:274)
[ ] at java.awt.Window.processEvent(Window.java:1823)
[ ] at java.awt.Component.dispatchEventImpl(Component.java:4652)
[ ] at java.awt.Container.dispatchEventImpl(Container.java:2099)
[ ] at java.awt.Window.dispatchEventImpl(Window.java:2478)
[ ] at java.awt.Component.dispatchEvent(Component.java:4482)
[ ] at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:644)
[ ] at java.awt.EventQueue.access$000(EventQueue.java:85)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:603)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:601)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:617)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:615)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.awt.EventQueue.dispatchEvent(EventQueue.java:614)
[ ] at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269)
[ ] at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184)
[ ] at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161)
[ ] at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
2014-12-20T20:27:16.051614 tid5872 [IFO,App] Startup script file (C:\Users\User\Desktop\OpenSPIM.app\MMStartup.bsh) not present.
2014-12-20T20:27:16.168620 tid5872 [IFO,App] [UI] JButton "OK" clicked in MMIntroDlg.
2014-12-20T20:27:24.115075 tid5872 [IFO,App] [UI] ConstrainedButton "OptionPane.button" clicked in JDialog.
2014-12-20T20:27:38.008869 tid5872 [IFO,App] [UI] JMenu "Plugins" clicked in MMStudioMainFrame.
2014-12-20T20:27:39.529956 tid5872 [IFO,App] Plugin command: Acquire SPIM image
2014-12-20T20:27:39.541957 tid5872 [dbg,Core] Pixel size config: preset Uncalibrated: added setting : Core-Initialize = 1
2014-12-20T20:27:39.541957 tid5872 [dbg,Core] Pixel size config: preset Uncalibrated: set resolution to 1.00000 um/px
2014-12-20T20:27:39.541957 tid5872 [IFO,Core] Will initialize 6 devices
2014-12-20T20:27:39.541957 tid5872 [IFO,Core] Will initialize device COM3
2014-12-20T20:27:39.541957 tid5872 [IFO,Core] Did initialize device COM3
2014-12-20T20:27:39.541957 tid5872 [IFO,Core] Will initialize device Cobolt
2014-12-20T20:27:39.541957 tid5872 [ERR,Core] Error occurred in device Cobolt: Error in device Cobolt: Duplicate property names are not allowed: .
2014-12-20T20:27:39.541957 tid5872 [ERR,Core] Error occurred in device setPixelSizeConfig: Device error encountered.
2014-12-20T20:27:39.542957 tid5872 [IFO,App] Couldn't define uncalibrated pixel size:
2014-12-20T20:27:39.542957 tid5872 [IFO,App] java.lang.Exception: Error in device Cobolt: Duplicate property names are not allowed: .
[ ] at mmcorej.MMCoreJJNI.CMMCore_setPixelSizeConfig(Native Method)
[ ] at mmcorej.CMMCore.setPixelSizeConfig(CMMCore.java:777)
[ ] at spim.SPIMAcquisition.ensurePixelResolution(SPIMAcquisition.java:263)
[ ] at spim.SPIMAcquisition.show(SPIMAcquisition.java:220)
[ ] at org.micromanager.MMStudioMainFrame.displayPlugin(MMStudioMainFrame.java:2755)
[ ] at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:157)
[ ] at org.micromanager.MMStudioMainFrame$49.run(MMStudioMainFrame.java:2720)
[ ] at org.micromanager.utils.GUIUtils$3.actionPerformed(GUIUtils.java:303)
[ ] at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:1995)
[ ] at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2318)
[ ] at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:387)
[ ] at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:242)
[ ] at javax.swing.AbstractButton.doClick(AbstractButton.java:357)
[ ] at javax.swing.plaf.basic.BasicMenuItemUI.doClick(BasicMenuItemUI.java:809)
[ ] at javax.swing.plaf.basic.BasicMenuItemUI$Handler.mouseReleased(BasicMenuItemUI.java:850)
[ ] at java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:272)
[ ] at java.awt.Component.processMouseEvent(Component.java:6289)
[ ] at javax.swing.JComponent.processMouseEvent(JComponent.java:3267)
[ ] at java.awt.Component.processEvent(Component.java:6054)
[ ] at java.awt.Container.processEvent(Container.java:2041)
[ ] at java.awt.Component.dispatchEventImpl(Component.java:4652)
[ ] at java.awt.Container.dispatchEventImpl(Container.java:2099)
[ ] at java.awt.Component.dispatchEvent(Component.java:4482)
[ ] at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4577)
[ ] at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4238)
[ ] at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4168)
[ ] at java.awt.Container.dispatchEventImpl(Container.java:2085)
[ ] at java.awt.Window.dispatchEventImpl(Window.java:2478)
[ ] at java.awt.Component.dispatchEvent(Component.java:4482)
[ ] at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:644)
[ ] at java.awt.EventQueue.access$000(EventQueue.java:85)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:603)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:601)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:617)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:615)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.awt.EventQueue.dispatchEvent(EventQueue.java:614)
[ ] at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269)
[ ] at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184)
[ ] at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161)
[ ] at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
2014-12-20T20:27:39.646963 tid5872 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:27:39.652963 tid5872 [dbg,dev:COM3] GetAnswer # retries = 7
2014-12-20T20:27:39.652963 tid5872 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-20T20:27:39.788971 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:27:39.793972 tid7212 [dbg,dev:COM3] GetAnswer # retries = 6
2014-12-20T20:27:39.793972 tid7212 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-20T20:27:39.800972 tid5872 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:27:39.812973 tid5872 [dbg,dev:COM3] GetAnswer # retries = 13
2014-12-20T20:27:39.812973 tid5872 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-20T20:27:39.860975 tid5872 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:27:39.872976 tid5872 [dbg,dev:COM3] GetAnswer # retries = 12
2014-12-20T20:27:39.872976 tid5872 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-20T20:27:40.212995 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:27:40.221996 tid7212 [dbg,dev:COM3] GetAnswer # retries = 10
2014-12-20T20:27:40.221996 tid7212 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-20T20:27:40.721025 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:27:40.732025 tid7212 [dbg,dev:COM3] GetAnswer # retries = 12
2014-12-20T20:27:40.732025 tid7212 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-20T20:27:41.205052 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:27:41.212053 tid7212 [dbg,dev:COM3] GetAnswer # retries = 8
2014-12-20T20:27:41.212053 tid7212 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-20T20:27:41.717082 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:27:41.722082 tid7212 [dbg,dev:COM3] GetAnswer # retries = 6
2014-12-20T20:27:41.722082 tid7212 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-20T20:27:42.197109 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:27:42.202109 tid7212 [dbg,dev:COM3] GetAnswer # retries = 6
2014-12-20T20:27:42.202109 tid7212 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-20T20:27:42.709138 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:27:42.722139 tid7212 [dbg,dev:COM3] GetAnswer # retries = 14
2014-12-20T20:27:42.722139 tid7212 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-20T20:27:43.221168 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:27:43.231168 tid7212 [dbg,dev:COM3] GetAnswer # retries = 11
2014-12-20T20:27:43.231168 tid7212 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-20T20:27:43.701195 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:27:43.711196 tid7212 [dbg,dev:COM3] GetAnswer # retries = 11
2014-12-20T20:27:43.711196 tid7212 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-20T20:27:44.213224 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:27:44.221225 tid7212 [dbg,dev:COM3] GetAnswer # retries = 9
2014-12-20T20:27:44.221225 tid7212 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-20T20:27:44.721253 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:27:44.731254 tid7212 [dbg,dev:COM3] GetAnswer # retries = 11
2014-12-20T20:27:44.731254 tid7212 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-20T20:27:45.205281 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:27:45.211281 tid7212 [dbg,dev:COM3] GetAnswer # retries = 7
2014-12-20T20:27:45.211281 tid7212 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-20T20:27:45.496298 tid5872 [IFO,App] [UI] JTabbedPane set to "Acquisition" in JFrame.
2014-12-20T20:27:45.717310 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:27:45.721311 tid7212 [dbg,dev:COM3] GetAnswer # retries = 5
2014-12-20T20:27:45.721311 tid7212 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-20T20:27:46.197338 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:27:46.201338 tid7212 [dbg,dev:COM3] GetAnswer # retries = 5
2014-12-20T20:27:46.201338 tid7212 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-20T20:27:46.709367 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:27:46.722368 tid7212 [dbg,dev:COM3] GetAnswer # retries = 14
2014-12-20T20:27:46.722368 tid7212 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-20T20:27:47.221396 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:27:47.231397 tid7212 [dbg,dev:COM3] GetAnswer # retries = 11
2014-12-20T20:27:47.231397 tid7212 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-20T20:27:47.701424 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:27:47.711424 tid7212 [dbg,dev:COM3] GetAnswer # retries = 11
2014-12-20T20:27:47.711424 tid7212 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-20T20:27:48.213453 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:27:48.221454 tid7212 [dbg,dev:COM3] GetAnswer # retries = 9
2014-12-20T20:27:48.221454 tid7212 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-20T20:27:48.652478 tid5872 [IFO,App] [UI] JTabbedPane set to "Position List" in JFrame.
2014-12-20T20:27:48.721482 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:27:48.730483 tid7212 [dbg,dev:COM3] GetAnswer # retries = 10
2014-12-20T20:27:48.730483 tid7212 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-20T20:27:49.205510 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:27:49.210510 tid7212 [dbg,dev:COM3] GetAnswer # retries = 6
2014-12-20T20:27:49.210510 tid7212 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-20T20:27:49.717539 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:27:49.720539 tid7212 [dbg,dev:COM3] GetAnswer # retries = 4
2014-12-20T20:27:49.720539 tid7212 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-20T20:27:50.197567 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:27:50.200567 tid7212 [dbg,dev:COM3] GetAnswer # retries = 4
2014-12-20T20:27:50.200567 tid7212 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-20T20:27:50.709596 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:27:50.720596 tid7212 [dbg,dev:COM3] GetAnswer # retries = 12
2014-12-20T20:27:50.720596 tid7212 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-20T20:27:51.221625 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:27:51.230626 tid7212 [dbg,dev:COM3] GetAnswer # retries = 10
2014-12-20T20:27:51.230626 tid7212 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-20T20:27:51.701653 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:27:51.710653 tid7212 [dbg,dev:COM3] GetAnswer # retries = 10
2014-12-20T20:27:51.710653 tid7212 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-20T20:27:52.213682 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:27:52.220682 tid7212 [dbg,dev:COM3] GetAnswer # retries = 8
2014-12-20T20:27:52.220682 tid7212 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-20T20:27:52.721711 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:27:52.730711 tid7212 [dbg,dev:COM3] GetAnswer # retries = 10
2014-12-20T20:27:52.730711 tid7212 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-20T20:27:53.205739 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:27:53.210739 tid7212 [dbg,dev:COM3] GetAnswer # retries = 6
2014-12-20T20:27:53.210739 tid7212 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-20T20:27:53.717768 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:27:53.720768 tid7212 [dbg,dev:COM3] GetAnswer # retries = 4
2014-12-20T20:27:53.720768 tid7212 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-20T20:27:54.196795 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:27:54.200796 tid7212 [dbg,dev:COM3] GetAnswer # retries = 4
2014-12-20T20:27:54.200796 tid7212 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-20T20:27:54.708825 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:27:54.719825 tid7212 [dbg,dev:COM3] GetAnswer # retries = 11
2014-12-20T20:27:54.719825 tid7212 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-20T20:27:55.220854 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:27:55.229854 tid7212 [dbg,dev:COM3] GetAnswer # retries = 10
2014-12-20T20:27:55.229854 tid7212 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-20T20:27:55.700881 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:27:55.709882 tid7212 [dbg,dev:COM3] GetAnswer # retries = 10
2014-12-20T20:27:55.709882 tid7212 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-20T20:27:56.212911 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:27:56.219911 tid7212 [dbg,dev:COM3] GetAnswer # retries = 8
2014-12-20T20:27:56.219911 tid7212 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-20T20:27:56.720940 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:27:56.729940 tid7212 [dbg,dev:COM3] GetAnswer # retries = 10
2014-12-20T20:27:56.729940 tid7212 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-20T20:27:57.204967 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:27:57.209968 tid7212 [dbg,dev:COM3] GetAnswer # retries = 6
2014-12-20T20:27:57.209968 tid7212 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-20T20:27:57.716997 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:27:57.719997 tid7212 [dbg,dev:COM3] GetAnswer # retries = 4
2014-12-20T20:27:57.719997 tid7212 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-20T20:27:58.197024 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:27:58.200024 tid7212 [dbg,dev:COM3] GetAnswer # retries = 4
2014-12-20T20:27:58.200024 tid7212 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-20T20:27:58.283029 tid5872 [IFO,App] [UI] JTabbedPane set to "Acquisition" in JFrame.
2014-12-20T20:27:58.709053 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:27:58.720054 tid7212 [dbg,dev:COM3] GetAnswer # retries = 12
2014-12-20T20:27:58.720054 tid7212 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-20T20:27:59.002070 tid5872 [IFO,App] [UI] JTextField clicked in JFrame.
2014-12-20T20:27:59.221083 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:27:59.230083 tid7212 [dbg,dev:COM3] GetAnswer # retries = 10
2014-12-20T20:27:59.230083 tid7212 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-20T20:27:59.701110 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:27:59.710111 tid7212 [dbg,dev:COM3] GetAnswer # retries = 10
2014-12-20T20:27:59.710111 tid7212 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-20T20:28:00.213139 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:00.219140 tid7212 [dbg,dev:COM3] GetAnswer # retries = 7
2014-12-20T20:28:00.219140 tid7212 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-20T20:28:00.721168 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:00.730169 tid7212 [dbg,dev:COM3] GetAnswer # retries = 10
2014-12-20T20:28:00.730169 tid7212 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-20T20:28:01.205196 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:01.209196 tid7212 [dbg,dev:COM3] GetAnswer # retries = 5
2014-12-20T20:28:01.209196 tid7212 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-20T20:28:01.717225 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:01.729226 tid7212 [dbg,dev:COM3] GetAnswer # retries = 13
2014-12-20T20:28:01.729226 tid7212 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-20T20:28:02.197253 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:02.209254 tid7212 [dbg,dev:COM3] GetAnswer # retries = 13
2014-12-20T20:28:02.209254 tid7212 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-20T20:28:02.268257 tid5872 [IFO,App] [UI] JTabbedPane set to "SPIM Ranges" in JFrame.
2014-12-20T20:28:02.709282 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:02.719283 tid7212 [dbg,dev:COM3] GetAnswer # retries = 11
2014-12-20T20:28:02.719283 tid7212 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-20T20:28:03.221311 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:03.229312 tid7212 [dbg,dev:COM3] GetAnswer # retries = 9
2014-12-20T20:28:03.229312 tid7212 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-20T20:28:03.701339 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:03.707339 tid5872 [IFO,App] [UI] JTabbedPane set to "Stage Controls" in JFrame.
2014-12-20T20:28:03.709339 tid7212 [dbg,dev:COM3] GetAnswer # retries = 9
2014-12-20T20:28:03.709339 tid7212 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-20T20:28:04.213368 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:04.219369 tid7212 [dbg,dev:COM3] GetAnswer # retries = 7
2014-12-20T20:28:04.219369 tid7212 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-20T20:28:04.721397 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:04.729398 tid7212 [dbg,dev:COM3] GetAnswer # retries = 9
2014-12-20T20:28:04.729398 tid7212 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-20T20:28:05.205425 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:05.209425 tid7212 [dbg,dev:COM3] GetAnswer # retries = 5
2014-12-20T20:28:05.209425 tid7212 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-20T20:28:05.717454 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:05.729455 tid7212 [dbg,dev:COM3] GetAnswer # retries = 13
2014-12-20T20:28:05.729455 tid7212 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-20T20:28:06.197482 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:06.208482 tid7212 [dbg,dev:COM3] GetAnswer # retries = 12
2014-12-20T20:28:06.208482 tid7212 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-20T20:28:06.390493 tid5872 [dbg,Core] Will start absolute move of Picard XY Stage to position (0.000, 0.000) um
2014-12-20T20:28:06.522500 tid5872 [IFO,App] [UI] JTabbedPane set to "Acquisition" in JFrame.
2014-12-20T20:28:06.709511 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:06.718512 tid7212 [dbg,dev:COM3] GetAnswer # retries = 10
2014-12-20T20:28:06.718512 tid7212 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-20T20:28:07.221540 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:07.228541 tid7212 [dbg,dev:COM3] GetAnswer # retries = 8
2014-12-20T20:28:07.228541 tid7212 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-20T20:28:07.701568 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:07.708568 tid7212 [dbg,dev:COM3] GetAnswer # retries = 8
2014-12-20T20:28:07.708568 tid7212 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-20T20:28:08.213597 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:08.218597 tid7212 [dbg,dev:COM3] GetAnswer # retries = 6
2014-12-20T20:28:08.218597 tid7212 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-20T20:28:08.721626 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:08.728626 tid7212 [dbg,dev:COM3] GetAnswer # retries = 8
2014-12-20T20:28:08.728626 tid7212 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-20T20:28:09.204654 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:09.208654 tid7212 [dbg,dev:COM3] GetAnswer # retries = 5
2014-12-20T20:28:09.208654 tid7212 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-20T20:28:09.716683 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:09.728684 tid7212 [dbg,dev:COM3] GetAnswer # retries = 12
2014-12-20T20:28:09.728684 tid7212 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-20T20:28:09.892693 tid5872 [IFO,App] [UI] JComboBox "Binning" clicked in MMStudioMainFrame.
2014-12-20T20:28:10.196710 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:10.208711 tid7212 [dbg,dev:COM3] GetAnswer # retries = 13
2014-12-20T20:28:10.208711 tid7212 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-20T20:28:10.708740 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:10.718740 tid7212 [dbg,dev:COM3] GetAnswer # retries = 11
2014-12-20T20:28:10.718740 tid7212 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-20T20:28:11.220769 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:11.228769 tid7212 [dbg,dev:COM3] GetAnswer # retries = 9
2014-12-20T20:28:11.228769 tid7212 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-20T20:28:11.700796 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:11.707797 tid7212 [dbg,dev:COM3] GetAnswer # retries = 8
2014-12-20T20:28:11.707797 tid7212 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-20T20:28:12.112820 tid5872 [IFO,App] [UI] JComboBox "Binning" clicked in MMStudioMainFrame.
2014-12-20T20:28:12.212826 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:12.217826 tid7212 [dbg,dev:COM3] GetAnswer # retries = 6
2014-12-20T20:28:12.217826 tid7212 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-20T20:28:12.720855 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:12.727855 tid7212 [dbg,dev:COM3] GetAnswer # retries = 8
2014-12-20T20:28:12.727855 tid7212 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-20T20:28:13.204883 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:13.207883 tid7212 [dbg,dev:COM3] GetAnswer # retries = 4
2014-12-20T20:28:13.207883 tid7212 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-20T20:28:13.716912 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:13.727912 tid7212 [dbg,dev:COM3] GetAnswer # retries = 12
2014-12-20T20:28:13.727912 tid7212 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-20T20:28:14.016929 tid5872 [dbg,Core] Will start continuous sequence acquisition from current camera
2014-12-20T20:28:14.016929 tid5872 [dbg,dev:COM3] SetCommand -> l1\r
2014-12-20T20:28:14.047931 tid5872 [dbg,dev:COM3] GetAnswer # retries = 32
2014-12-20T20:28:14.047931 tid5872 [dbg,dev:COM3] GetAnswer <- \nOK\r
2014-12-20T20:28:14.047931 tid5872 [dbg,Core] Waiting for device Cobolt...
2014-12-20T20:28:14.047931 tid5872 [dbg,Core] Finished waiting for device Cobolt
2014-12-20T20:28:14.187939 tid5872 [dbg,Core] Did start continuous sequence acquisition from current camera
2014-12-20T20:28:14.196939 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:14.207940 tid7212 [dbg,dev:COM3] GetAnswer # retries = 12
2014-12-20T20:28:14.207940 tid7212 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-20T20:28:14.647965 tid5872 [IFO,App] [UI] JToggleButton "Live" toggled off in MMStudioMainFrame.
2014-12-20T20:28:14.708969 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:14.718969 tid7212 [dbg,dev:COM3] GetAnswer # retries = 11
2014-12-20T20:28:14.718969 tid7212 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-20T20:28:15.220998 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:15.228998 tid7212 [dbg,dev:COM3] GetAnswer # retries = 9
2014-12-20T20:28:15.228998 tid7212 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-20T20:28:15.701025 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:15.710026 tid7212 [dbg,dev:COM3] GetAnswer # retries = 8
2014-12-20T20:28:15.710026 tid7212 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-20T20:28:16.213055 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:16.219055 tid7212 [dbg,dev:COM3] GetAnswer # retries = 7
2014-12-20T20:28:16.219055 tid7212 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-20T20:28:16.721084 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:16.729084 tid7212 [dbg,dev:COM3] GetAnswer # retries = 9
2014-12-20T20:28:16.729084 tid7212 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-20T20:28:17.205111 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:17.209112 tid7212 [dbg,dev:COM3] GetAnswer # retries = 5
2014-12-20T20:28:17.209112 tid7212 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-20T20:28:17.717141 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:17.729141 tid7212 [dbg,dev:COM3] GetAnswer # retries = 11
2014-12-20T20:28:17.729141 tid7212 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-20T20:28:18.197168 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:18.208169 tid7212 [dbg,dev:COM3] GetAnswer # retries = 12
2014-12-20T20:28:18.208169 tid7212 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-20T20:28:18.710197 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:18.722198 tid7212 [dbg,dev:COM3] GetAnswer # retries = 11
2014-12-20T20:28:18.722198 tid7212 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-20T20:28:19.221227 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:19.228227 tid7212 [dbg,dev:COM3] GetAnswer # retries = 8
2014-12-20T20:28:19.228227 tid7212 [dbg,dev:COM3] GetAnswer <- \n0.0100\r
2014-12-20T20:28:19.701254 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:19.901266 tid7212 [dbg,dev:COM3] GetAnswer # retries = 163
2014-12-20T20:28:20.101277 tid7212 [dbg,dev:COM3] GetAnswer # retries = 345
2014-12-20T20:28:20.201283 tid7212 [IFO,dev:COM3] TERM_TIMEOUT error occured!
2014-12-20T20:28:20.201283 tid7212 [ERR,Core] Error occurred in device COM3: Error in device COM3: Error code 107 (6b hex).
2014-12-20T20:28:20.201283 tid7212 [IFO,App] "PowerSetpoint" on Cobolt is non-numeric.
2014-12-20T20:28:20.201283 tid7212 [IFO,App] java.lang.NumberFormatException: For input string: "557312021430771840000000000000000000000000000000000000000000%.4f"
[ ] at sun.misc.FloatingDecimal.readJavaFormatString(FloatingDecimal.java:1222)
[ ] at java.lang.Double.parseDouble(Double.java:510)
[ ] at spim.setup.Device.getPropertyDouble(Device.java:116)
[ ] at spim.setup.Cobolt.getPower(Cobolt.java:27)
[ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1255)
[ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:94)
[ ] at spim.SPIMAcquisition$18.run(SPIMAcquisition.java:1021)
[ ] at java.util.TimerThread.mainLoop(Timer.java:512)
[ ] at java.util.TimerThread.run(Timer.java:462)
2014-12-20T20:28:20.213283 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:20.413295 tid7212 [dbg,dev:COM3] GetAnswer # retries = 198
2014-12-20T20:28:20.613306 tid7212 [dbg,dev:COM3] GetAnswer # retries = 397
2014-12-20T20:28:20.713312 tid7212 [IFO,dev:COM3] TERM_TIMEOUT error occured!
2014-12-20T20:28:20.713312 tid7212 [ERR,Core] Error occurred in device COM3: Error in device COM3: Error code 107 (6b hex).
2014-12-20T20:28:20.713312 tid7212 [IFO,App] "PowerSetpoint" on Cobolt is non-numeric.
2014-12-20T20:28:20.713312 tid7212 [IFO,App] java.lang.NumberFormatException: For input string: "557312021430771840000000000000000000000000000000000000000000%.4f"
[ ] at sun.misc.FloatingDecimal.readJavaFormatString(FloatingDecimal.java:1222)
[ ] at java.lang.Double.parseDouble(Double.java:510)
[ ] at spim.setup.Device.getPropertyDouble(Device.java:116)
[ ] at spim.setup.Cobolt.getPower(Cobolt.java:27)
[ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1255)
[ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:94)
[ ] at spim.SPIMAcquisition$18.run(SPIMAcquisition.java:1021)
[ ] at java.util.TimerThread.mainLoop(Timer.java:512)
[ ] at java.util.TimerThread.run(Timer.java:462)
2014-12-20T20:28:20.725313 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:20.925324 tid7212 [dbg,dev:COM3] GetAnswer # retries = 191
2014-12-20T20:28:21.139336 tid7212 [dbg,dev:COM3] GetAnswer # retries = 376
2014-12-20T20:28:21.225341 tid7212 [IFO,dev:COM3] TERM_TIMEOUT error occured!
2014-12-20T20:28:21.225341 tid7212 [ERR,Core] Error occurred in device COM3: Error in device COM3: Error code 107 (6b hex).
2014-12-20T20:28:21.225341 tid7212 [IFO,App] "PowerSetpoint" on Cobolt is non-numeric.
2014-12-20T20:28:21.225341 tid7212 [IFO,App] java.lang.NumberFormatException: For input string: "557312021430771840000000000000000000000000000000000000000000%.4f"
[ ] at sun.misc.FloatingDecimal.readJavaFormatString(FloatingDecimal.java:1222)
[ ] at java.lang.Double.parseDouble(Double.java:510)
[ ] at spim.setup.Device.getPropertyDouble(Device.java:116)
[ ] at spim.setup.Cobolt.getPower(Cobolt.java:27)
[ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1255)
[ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:94)
[ ] at spim.SPIMAcquisition$18.run(SPIMAcquisition.java:1021)
[ ] at java.util.TimerThread.mainLoop(Timer.java:512)
[ ] at java.util.TimerThread.run(Timer.java:462)
2014-12-20T20:28:21.237342 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:21.437353 tid7212 [dbg,dev:COM3] GetAnswer # retries = 192
2014-12-20T20:28:21.637365 tid7212 [dbg,dev:COM3] GetAnswer # retries = 392
2014-12-20T20:28:21.737371 tid7212 [IFO,dev:COM3] TERM_TIMEOUT error occured!
2014-12-20T20:28:21.737371 tid7212 [ERR,Core] Error occurred in device COM3: Error in device COM3: Error code 107 (6b hex).
2014-12-20T20:28:21.737371 tid7212 [IFO,App] "PowerSetpoint" on Cobolt is non-numeric.
2014-12-20T20:28:21.737371 tid7212 [IFO,App] java.lang.NumberFormatException: For input string: "557312021430771840000000000000000000000000000000000000000000%.4f"
[ ] at sun.misc.FloatingDecimal.readJavaFormatString(FloatingDecimal.java:1222)
[ ] at java.lang.Double.parseDouble(Double.java:510)
[ ] at spim.setup.Device.getPropertyDouble(Device.java:116)
[ ] at spim.setup.Cobolt.getPower(Cobolt.java:27)
[ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1255)
[ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:94)
[ ] at spim.SPIMAcquisition$18.run(SPIMAcquisition.java:1021)
[ ] at java.util.TimerThread.mainLoop(Timer.java:512)
[ ] at java.util.TimerThread.run(Timer.java:462)
2014-12-20T20:28:21.749371 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:21.949383 tid7212 [dbg,dev:COM3] GetAnswer # retries = 140
2014-12-20T20:28:22.149394 tid7212 [dbg,dev:COM3] GetAnswer # retries = 328
2014-12-20T20:28:22.249400 tid7212 [IFO,dev:COM3] TERM_TIMEOUT error occured!
2014-12-20T20:28:22.249400 tid7212 [ERR,Core] Error occurred in device COM3: Error in device COM3: Error code 107 (6b hex).
2014-12-20T20:28:22.249400 tid7212 [IFO,App] "PowerSetpoint" on Cobolt is non-numeric.
2014-12-20T20:28:22.249400 tid7212 [IFO,App] java.lang.NumberFormatException: For input string: "557312021430771840000000000000000000000000000000000000000000%.4f"
[ ] at sun.misc.FloatingDecimal.readJavaFormatString(FloatingDecimal.java:1222)
[ ] at java.lang.Double.parseDouble(Double.java:510)
[ ] at spim.setup.Device.getPropertyDouble(Device.java:116)
[ ] at spim.setup.Cobolt.getPower(Cobolt.java:27)
[ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1255)
[ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:94)
[ ] at spim.SPIMAcquisition$18.run(SPIMAcquisition.java:1021)
[ ] at java.util.TimerThread.mainLoop(Timer.java:512)
[ ] at java.util.TimerThread.run(Timer.java:462)
2014-12-20T20:28:22.261401 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:22.461412 tid7212 [dbg,dev:COM3] GetAnswer # retries = 194
2014-12-20T20:28:22.661423 tid7212 [dbg,dev:COM3] GetAnswer # retries = 382
2014-12-20T20:28:22.761429 tid7212 [IFO,dev:COM3] TERM_TIMEOUT error occured!
2014-12-20T20:28:22.761429 tid7212 [ERR,Core] Error occurred in device COM3: Error in device COM3: Error code 107 (6b hex).
2014-12-20T20:28:22.761429 tid7212 [IFO,App] "PowerSetpoint" on Cobolt is non-numeric.
2014-12-20T20:28:22.761429 tid7212 [IFO,App] java.lang.NumberFormatException: For input string: "557312021430771840000000000000000000000000000000000000000000%.4f"
[ ] at sun.misc.FloatingDecimal.readJavaFormatString(FloatingDecimal.java:1222)
[ ] at java.lang.Double.parseDouble(Double.java:510)
[ ] at spim.setup.Device.getPropertyDouble(Device.java:116)
[ ] at spim.setup.Cobolt.getPower(Cobolt.java:27)
[ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1255)
[ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:94)
[ ] at spim.SPIMAcquisition$18.run(SPIMAcquisition.java:1021)
[ ] at java.util.TimerThread.mainLoop(Timer.java:512)
[ ] at java.util.TimerThread.run(Timer.java:462)
2014-12-20T20:28:22.773430 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:22.973441 tid7212 [dbg,dev:COM3] GetAnswer # retries = 193
2014-12-20T20:28:23.173453 tid7212 [dbg,dev:COM3] GetAnswer # retries = 387
2014-12-20T20:28:23.273458 tid7212 [IFO,dev:COM3] TERM_TIMEOUT error occured!
2014-12-20T20:28:23.273458 tid7212 [ERR,Core] Error occurred in device COM3: Error in device COM3: Error code 107 (6b hex).
2014-12-20T20:28:23.273458 tid7212 [IFO,App] "PowerSetpoint" on Cobolt is non-numeric.
2014-12-20T20:28:23.273458 tid7212 [IFO,App] java.lang.NumberFormatException: For input string: "557312021430771840000000000000000000000000000000000000000000%.4f"
[ ] at sun.misc.FloatingDecimal.readJavaFormatString(FloatingDecimal.java:1222)
[ ] at java.lang.Double.parseDouble(Double.java:510)
[ ] at spim.setup.Device.getPropertyDouble(Device.java:116)
[ ] at spim.setup.Cobolt.getPower(Cobolt.java:27)
[ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1255)
[ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:94)
[ ] at spim.SPIMAcquisition$18.run(SPIMAcquisition.java:1021)
[ ] at java.util.TimerThread.mainLoop(Timer.java:512)
[ ] at java.util.TimerThread.run(Timer.java:462)
2014-12-20T20:28:23.285459 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:23.297460 tid5872 [IFO,App] [UI] JComboBox "Binning" clicked in MMStudioMainFrame.
2014-12-20T20:28:23.485471 tid7212 [dbg,dev:COM3] GetAnswer # retries = 125
2014-12-20T20:28:23.685482 tid7212 [dbg,dev:COM3] GetAnswer # retries = 322
2014-12-20T20:28:23.785488 tid7212 [IFO,dev:COM3] TERM_TIMEOUT error occured!
2014-12-20T20:28:23.785488 tid7212 [ERR,Core] Error occurred in device COM3: Error in device COM3: Error code 107 (6b hex).
2014-12-20T20:28:23.785488 tid7212 [IFO,App] "PowerSetpoint" on Cobolt is non-numeric.
2014-12-20T20:28:23.785488 tid7212 [IFO,App] java.lang.NumberFormatException: For input string: "557312021430771840000000000000000000000000000000000000000000%.4f"
[ ] at sun.misc.FloatingDecimal.readJavaFormatString(FloatingDecimal.java:1222)
[ ] at java.lang.Double.parseDouble(Double.java:510)
[ ] at spim.setup.Device.getPropertyDouble(Device.java:116)
[ ] at spim.setup.Cobolt.getPower(Cobolt.java:27)
[ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1255)
[ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:94)
[ ] at spim.SPIMAcquisition$18.run(SPIMAcquisition.java:1021)
[ ] at java.util.TimerThread.mainLoop(Timer.java:512)
[ ] at java.util.TimerThread.run(Timer.java:462)
2014-12-20T20:28:23.796488 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:23.996500 tid7212 [dbg,dev:COM3] GetAnswer # retries = 184
2014-12-20T20:28:24.196511 tid7212 [dbg,dev:COM3] GetAnswer # retries = 383
2014-12-20T20:28:24.296517 tid7212 [IFO,dev:COM3] TERM_TIMEOUT error occured!
2014-12-20T20:28:24.296517 tid7212 [ERR,Core] Error occurred in device COM3: Error in device COM3: Error code 107 (6b hex).
2014-12-20T20:28:24.296517 tid7212 [IFO,App] "PowerSetpoint" on Cobolt is non-numeric.
2014-12-20T20:28:24.296517 tid7212 [IFO,App] java.lang.NumberFormatException: For input string: "557312021430771840000000000000000000000000000000000000000000%.4f"
[ ] at sun.misc.FloatingDecimal.readJavaFormatString(FloatingDecimal.java:1222)
[ ] at java.lang.Double.parseDouble(Double.java:510)
[ ] at spim.setup.Device.getPropertyDouble(Device.java:116)
[ ] at spim.setup.Cobolt.getPower(Cobolt.java:27)
[ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1255)
[ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:94)
[ ] at spim.SPIMAcquisition$18.run(SPIMAcquisition.java:1021)
[ ] at java.util.TimerThread.mainLoop(Timer.java:512)
[ ] at java.util.TimerThread.run(Timer.java:462)
2014-12-20T20:28:24.308518 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:24.509529 tid7212 [dbg,dev:COM3] GetAnswer # retries = 185
2014-12-20T20:28:24.566532 tid5872 [IFO,App] [UI] "ComboBox.list" set to "4x4" in MMStudioMainFrame.
2014-12-20T20:28:24.567532 tid5872 [IFO,App] Stop called in LivemodeTimer, true
2014-12-20T20:28:24.568532 tid5872 [dbg,Core] Will stop sequence acquisition from current camera
2014-12-20T20:28:24.582533 tid6484 [dbg,dev:COM3] SetCommand -> l0\r
2014-12-20T20:28:24.709541 tid7212 [dbg,dev:COM3] GetAnswer # retries = 386
2014-12-20T20:28:24.782545 tid6484 [dbg,dev:COM3] GetAnswer # retries = 201
2014-12-20T20:28:24.808546 tid7212 [IFO,dev:COM3] TERM_TIMEOUT error occured!
2014-12-20T20:28:24.808546 tid7212 [ERR,Core] Error occurred in device COM3: Error in device COM3: Error code 107 (6b hex).
2014-12-20T20:28:24.808546 tid7212 [IFO,App] "PowerSetpoint" on Cobolt is non-numeric.
2014-12-20T20:28:24.808546 tid7212 [IFO,App] java.lang.NumberFormatException: For input string: "557312021430771840000000000000000000000000000000000000000000%.4f"
[ ] at sun.misc.FloatingDecimal.readJavaFormatString(FloatingDecimal.java:1222)
[ ] at java.lang.Double.parseDouble(Double.java:510)
[ ] at spim.setup.Device.getPropertyDouble(Device.java:116)
[ ] at spim.setup.Cobolt.getPower(Cobolt.java:27)
[ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1255)
[ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:94)
[ ] at spim.SPIMAcquisition$18.run(SPIMAcquisition.java:1021)
[ ] at java.util.TimerThread.mainLoop(Timer.java:512)
[ ] at java.util.TimerThread.run(Timer.java:462)
2014-12-20T20:28:24.982556 tid6484 [dbg,dev:COM3] GetAnswer # retries = 402
2014-12-20T20:28:25.082562 tid6484 [IFO,dev:COM3] TERM_TIMEOUT error occured!
2014-12-20T20:28:25.082562 tid6484 [ERR,Core] Error occurred in device COM3: Error in device COM3: Error code 107 (6b hex).
2014-12-20T20:28:25.138565 tid5872 [dbg,Core] Did stop sequence acquisition from current camera
2014-12-20T20:28:25.139565 tid5872 [dbg,Core] Will set property: OrcaFlash-Binning = 4x4
2014-12-20T20:28:25.463584 tid5872 [dbg,Core] Did set property: OrcaFlash-Binning = 4x4
2014-12-20T20:28:25.473584 tid5872 [dbg,Core] Will start continuous sequence acquisition from current camera
2014-12-20T20:28:25.473584 tid5872 [dbg,dev:COM3] SetCommand -> l1\r
2014-12-20T20:28:25.524587 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:25.673596 tid5872 [dbg,dev:COM3] GetAnswer # retries = 201
2014-12-20T20:28:25.724599 tid7212 [dbg,dev:COM3] GetAnswer # retries = 201
2014-12-20T20:28:25.873607 tid5872 [dbg,dev:COM3] GetAnswer # retries = 402
2014-12-20T20:28:25.924610 tid7212 [dbg,dev:COM3] GetAnswer # retries = 402
2014-12-20T20:28:25.973613 tid5872 [IFO,dev:COM3] TERM_TIMEOUT error occured!
2014-12-20T20:28:25.973613 tid5872 [ERR,Core] Error occurred in device COM3: Error in device COM3: Error code 107 (6b hex).
2014-12-20T20:28:25.973613 tid5872 [dbg,Core] Waiting for device Cobolt...
2014-12-20T20:28:26.024616 tid7212 [IFO,dev:COM3] TERM_TIMEOUT error occured!
2014-12-20T20:28:26.024616 tid7212 [ERR,Core] Error occurred in device COM3: Error in device COM3: Error code 107 (6b hex).
2014-12-20T20:28:26.024616 tid5872 [dbg,Core] Finished waiting for device Cobolt
2014-12-20T20:28:26.024616 tid7212 [IFO,App] "PowerSetpoint" on Cobolt is non-numeric.
2014-12-20T20:28:26.024616 tid7212 [IFO,App] java.lang.NumberFormatException: For input string: "557312021430771840000000000000000000000000000000000000000000%.4f"
[ ] at sun.misc.FloatingDecimal.readJavaFormatString(FloatingDecimal.java:1222)
[ ] at java.lang.Double.parseDouble(Double.java:510)
[ ] at spim.setup.Device.getPropertyDouble(Device.java:116)
[ ] at spim.setup.Cobolt.getPower(Cobolt.java:27)
[ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1255)
[ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:94)
[ ] at spim.SPIMAcquisition$18.run(SPIMAcquisition.java:1021)
[ ] at java.util.TimerThread.mainLoop(Timer.java:512)
[ ] at java.util.TimerThread.run(Timer.java:462)
2014-12-20T20:28:26.112621 tid5872 [dbg,Core] Did start continuous sequence acquisition from current camera
2014-12-20T20:28:26.132622 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:26.332633 tid7212 [dbg,dev:COM3] GetAnswer # retries = 196
2014-12-20T20:28:26.532645 tid7212 [dbg,dev:COM3] GetAnswer # retries = 394
2014-12-20T20:28:26.632651 tid7212 [IFO,dev:COM3] TERM_TIMEOUT error occured!
2014-12-20T20:28:26.632651 tid7212 [ERR,Core] Error occurred in device COM3: Error in device COM3: Error code 107 (6b hex).
2014-12-20T20:28:26.632651 tid7212 [IFO,App] "PowerSetpoint" on Cobolt is non-numeric.
2014-12-20T20:28:26.632651 tid7212 [IFO,App] java.lang.NumberFormatException: For input string: "557312021430771840000000000000000000000000000000000000000000%.4f"
[ ] at sun.misc.FloatingDecimal.readJavaFormatString(FloatingDecimal.java:1222)
[ ] at java.lang.Double.parseDouble(Double.java:510)
[ ] at spim.setup.Device.getPropertyDouble(Device.java:116)
[ ] at spim.setup.Cobolt.getPower(Cobolt.java:27)
[ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1255)
[ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:94)
[ ] at spim.SPIMAcquisition$18.run(SPIMAcquisition.java:1021)
[ ] at java.util.TimerThread.mainLoop(Timer.java:512)
[ ] at java.util.TimerThread.run(Timer.java:462)
2014-12-20T20:28:26.644651 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:26.844663 tid7212 [dbg,dev:COM3] GetAnswer # retries = 200
2014-12-20T20:28:27.044674 tid7212 [dbg,dev:COM3] GetAnswer # retries = 400
2014-12-20T20:28:27.144680 tid7212 [IFO,dev:COM3] TERM_TIMEOUT error occured!
2014-12-20T20:28:27.144680 tid7212 [ERR,Core] Error occurred in device COM3: Error in device COM3: Error code 107 (6b hex).
2014-12-20T20:28:27.144680 tid7212 [IFO,App] "PowerSetpoint" on Cobolt is non-numeric.
2014-12-20T20:28:27.144680 tid7212 [IFO,App] java.lang.NumberFormatException: For input string: "557312021430771840000000000000000000000000000000000000000000%.4f"
[ ] at sun.misc.FloatingDecimal.readJavaFormatString(FloatingDecimal.java:1222)
[ ] at java.lang.Double.parseDouble(Double.java:510)
[ ] at spim.setup.Device.getPropertyDouble(Device.java:116)
[ ] at spim.setup.Cobolt.getPower(Cobolt.java:27)
[ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1255)
[ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:94)
[ ] at spim.SPIMAcquisition$18.run(SPIMAcquisition.java:1021)
[ ] at java.util.TimerThread.mainLoop(Timer.java:512)
[ ] at java.util.TimerThread.run(Timer.java:462)
2014-12-20T20:28:27.156681 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:27.356692 tid7212 [dbg,dev:COM3] GetAnswer # retries = 197
2014-12-20T20:28:27.556703 tid7212 [dbg,dev:COM3] GetAnswer # retries = 392
2014-12-20T20:28:27.656709 tid7212 [IFO,dev:COM3] TERM_TIMEOUT error occured!
2014-12-20T20:28:27.656709 tid7212 [ERR,Core] Error occurred in device COM3: Error in device COM3: Error code 107 (6b hex).
2014-12-20T20:28:27.656709 tid7212 [IFO,App] "PowerSetpoint" on Cobolt is non-numeric.
2014-12-20T20:28:27.656709 tid7212 [IFO,App] java.lang.NumberFormatException: For input string: "557312021430771840000000000000000000000000000000000000000000%.4f"
[ ] at sun.misc.FloatingDecimal.readJavaFormatString(FloatingDecimal.java:1222)
[ ] at java.lang.Double.parseDouble(Double.java:510)
[ ] at spim.setup.Device.getPropertyDouble(Device.java:116)
[ ] at spim.setup.Cobolt.getPower(Cobolt.java:27)
[ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1255)
[ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:94)
[ ] at spim.SPIMAcquisition$18.run(SPIMAcquisition.java:1021)
[ ] at java.util.TimerThread.mainLoop(Timer.java:512)
[ ] at java.util.TimerThread.run(Timer.java:462)
2014-12-20T20:28:27.669710 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:27.869721 tid7212 [dbg,dev:COM3] GetAnswer # retries = 201
2014-12-20T20:28:28.069733 tid7212 [dbg,dev:COM3] GetAnswer # retries = 401
2014-12-20T20:28:28.169738 tid7212 [IFO,dev:COM3] TERM_TIMEOUT error occured!
2014-12-20T20:28:28.169738 tid7212 [ERR,Core] Error occurred in device COM3: Error in device COM3: Error code 107 (6b hex).
2014-12-20T20:28:28.169738 tid7212 [IFO,App] "PowerSetpoint" on Cobolt is non-numeric.
2014-12-20T20:28:28.169738 tid7212 [IFO,App] java.lang.NumberFormatException: For input string: "557312021430771840000000000000000000000000000000000000000000%.4f"
[ ] at sun.misc.FloatingDecimal.readJavaFormatString(FloatingDecimal.java:1222)
[ ] at java.lang.Double.parseDouble(Double.java:510)
[ ] at spim.setup.Device.getPropertyDouble(Device.java:116)
[ ] at spim.setup.Cobolt.getPower(Cobolt.java:27)
[ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1255)
[ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:94)
[ ] at spim.SPIMAcquisition$18.run(SPIMAcquisition.java:1021)
[ ] at java.util.TimerThread.mainLoop(Timer.java:512)
[ ] at java.util.TimerThread.run(Timer.java:462)
2014-12-20T20:28:28.180739 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:28.380751 tid7212 [dbg,dev:COM3] GetAnswer # retries = 199
2014-12-20T20:28:28.580762 tid7212 [dbg,dev:COM3] GetAnswer # retries = 395
2014-12-20T20:28:28.680768 tid7212 [IFO,dev:COM3] TERM_TIMEOUT error occured!
2014-12-20T20:28:28.680768 tid7212 [ERR,Core] Error occurred in device COM3: Error in device COM3: Error code 107 (6b hex).
2014-12-20T20:28:28.680768 tid7212 [IFO,App] "PowerSetpoint" on Cobolt is non-numeric.
2014-12-20T20:28:28.680768 tid7212 [IFO,App] java.lang.NumberFormatException: For input string: "557312021430771840000000000000000000000000000000000000000000%.4f"
[ ] at sun.misc.FloatingDecimal.readJavaFormatString(FloatingDecimal.java:1222)
[ ] at java.lang.Double.parseDouble(Double.java:510)
[ ] at spim.setup.Device.getPropertyDouble(Device.java:116)
[ ] at spim.setup.Cobolt.getPower(Cobolt.java:27)
[ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1255)
[ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:94)
[ ] at spim.SPIMAcquisition$18.run(SPIMAcquisition.java:1021)
[ ] at java.util.TimerThread.mainLoop(Timer.java:512)
[ ] at java.util.TimerThread.run(Timer.java:462)
2014-12-20T20:28:28.692768 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:28.892780 tid7212 [dbg,dev:COM3] GetAnswer # retries = 197
2014-12-20T20:28:29.092791 tid7212 [dbg,dev:COM3] GetAnswer # retries = 395
2014-12-20T20:28:29.192797 tid7212 [IFO,dev:COM3] TERM_TIMEOUT error occured!
2014-12-20T20:28:29.192797 tid7212 [ERR,Core] Error occurred in device COM3: Error in device COM3: Error code 107 (6b hex).
2014-12-20T20:28:29.192797 tid7212 [IFO,App] "PowerSetpoint" on Cobolt is non-numeric.
2014-12-20T20:28:29.192797 tid7212 [IFO,App] java.lang.NumberFormatException: For input string: "557312021430771840000000000000000000000000000000000000000000%.4f"
[ ] at sun.misc.FloatingDecimal.readJavaFormatString(FloatingDecimal.java:1222)
[ ] at java.lang.Double.parseDouble(Double.java:510)
[ ] at spim.setup.Device.getPropertyDouble(Device.java:116)
[ ] at spim.setup.Cobolt.getPower(Cobolt.java:27)
[ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1255)
[ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:94)
[ ] at spim.SPIMAcquisition$18.run(SPIMAcquisition.java:1021)
[ ] at java.util.TimerThread.mainLoop(Timer.java:512)
[ ] at java.util.TimerThread.run(Timer.java:462)
2014-12-20T20:28:29.204798 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:29.404809 tid7212 [dbg,dev:COM3] GetAnswer # retries = 200
2014-12-20T20:28:29.604821 tid7212 [dbg,dev:COM3] GetAnswer # retries = 401
2014-12-20T20:28:29.704826 tid7212 [IFO,dev:COM3] TERM_TIMEOUT error occured!
2014-12-20T20:28:29.704826 tid7212 [ERR,Core] Error occurred in device COM3: Error in device COM3: Error code 107 (6b hex).
2014-12-20T20:28:29.704826 tid7212 [IFO,App] "PowerSetpoint" on Cobolt is non-numeric.
2014-12-20T20:28:29.704826 tid7212 [IFO,App] java.lang.NumberFormatException: For input string: "557312021430771840000000000000000000000000000000000000000000%.4f"
[ ] at sun.misc.FloatingDecimal.readJavaFormatString(FloatingDecimal.java:1222)
[ ] at java.lang.Double.parseDouble(Double.java:510)
[ ] at spim.setup.Device.getPropertyDouble(Device.java:116)
[ ] at spim.setup.Cobolt.getPower(Cobolt.java:27)
[ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1255)
[ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:94)
[ ] at spim.SPIMAcquisition$18.run(SPIMAcquisition.java:1021)
[ ] at java.util.TimerThread.mainLoop(Timer.java:512)
[ ] at java.util.TimerThread.run(Timer.java:462)
2014-12-20T20:28:29.716827 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:29.916838 tid7212 [dbg,dev:COM3] GetAnswer # retries = 196
2014-12-20T20:28:30.116850 tid7212 [dbg,dev:COM3] GetAnswer # retries = 397
2014-12-20T20:28:30.216856 tid7212 [IFO,dev:COM3] TERM_TIMEOUT error occured!
2014-12-20T20:28:30.216856 tid7212 [ERR,Core] Error occurred in device COM3: Error in device COM3: Error code 107 (6b hex).
2014-12-20T20:28:30.216856 tid7212 [IFO,App] "PowerSetpoint" on Cobolt is non-numeric.
2014-12-20T20:28:30.216856 tid7212 [IFO,App] java.lang.NumberFormatException: For input string: "557312021430771840000000000000000000000000000000000000000000%.4f"
[ ] at sun.misc.FloatingDecimal.readJavaFormatString(FloatingDecimal.java:1222)
[ ] at java.lang.Double.parseDouble(Double.java:510)
[ ] at spim.setup.Device.getPropertyDouble(Device.java:116)
[ ] at spim.setup.Cobolt.getPower(Cobolt.java:27)
[ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1255)
[ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:94)
[ ] at spim.SPIMAcquisition$18.run(SPIMAcquisition.java:1021)
[ ] at java.util.TimerThread.mainLoop(Timer.java:512)
[ ] at java.util.TimerThread.run(Timer.java:462)
2014-12-20T20:28:30.228856 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:30.428868 tid7212 [dbg,dev:COM3] GetAnswer # retries = 197
2014-12-20T20:28:30.628879 tid7212 [dbg,dev:COM3] GetAnswer # retries = 395
2014-12-20T20:28:30.728885 tid7212 [IFO,dev:COM3] TERM_TIMEOUT error occured!
2014-12-20T20:28:30.728885 tid7212 [ERR,Core] Error occurred in device COM3: Error in device COM3: Error code 107 (6b hex).
2014-12-20T20:28:30.728885 tid7212 [IFO,App] "PowerSetpoint" on Cobolt is non-numeric.
2014-12-20T20:28:30.728885 tid7212 [IFO,App] java.lang.NumberFormatException: For input string: "557312021430771840000000000000000000000000000000000000000000%.4f"
[ ] at sun.misc.FloatingDecimal.readJavaFormatString(FloatingDecimal.java:1222)
[ ] at java.lang.Double.parseDouble(Double.java:510)
[ ] at spim.setup.Device.getPropertyDouble(Device.java:116)
[ ] at spim.setup.Cobolt.getPower(Cobolt.java:27)
[ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1255)
[ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:94)
[ ] at spim.SPIMAcquisition$18.run(SPIMAcquisition.java:1021)
[ ] at java.util.TimerThread.mainLoop(Timer.java:512)
[ ] at java.util.TimerThread.run(Timer.java:462)
2014-12-20T20:28:30.740886 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:30.940897 tid7212 [dbg,dev:COM3] GetAnswer # retries = 201
2014-12-20T20:28:31.140908 tid7212 [dbg,dev:COM3] GetAnswer # retries = 402
2014-12-20T20:28:31.240914 tid7212 [IFO,dev:COM3] TERM_TIMEOUT error occured!
2014-12-20T20:28:31.240914 tid7212 [ERR,Core] Error occurred in device COM3: Error in device COM3: Error code 107 (6b hex).
2014-12-20T20:28:31.240914 tid7212 [IFO,App] "PowerSetpoint" on Cobolt is non-numeric.
2014-12-20T20:28:31.240914 tid7212 [IFO,App] java.lang.NumberFormatException: For input string: "557312021430771840000000000000000000000000000000000000000000%.4f"
[ ] at sun.misc.FloatingDecimal.readJavaFormatString(FloatingDecimal.java:1222)
[ ] at java.lang.Double.parseDouble(Double.java:510)
[ ] at spim.setup.Device.getPropertyDouble(Device.java:116)
[ ] at spim.setup.Cobolt.getPower(Cobolt.java:27)
[ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1255)
[ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:94)
[ ] at spim.SPIMAcquisition$18.run(SPIMAcquisition.java:1021)
[ ] at java.util.TimerThread.mainLoop(Timer.java:512)
[ ] at java.util.TimerThread.run(Timer.java:462)
2014-12-20T20:28:31.252915 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:31.452926 tid7212 [dbg,dev:COM3] GetAnswer # retries = 196
2014-12-20T20:28:31.652938 tid7212 [dbg,dev:COM3] GetAnswer # retries = 388
2014-12-20T20:28:31.752943 tid7212 [IFO,dev:COM3] TERM_TIMEOUT error occured!
2014-12-20T20:28:31.752943 tid7212 [ERR,Core] Error occurred in device COM3: Error in device COM3: Error code 107 (6b hex).
2014-12-20T20:28:31.752943 tid7212 [IFO,App] "PowerSetpoint" on Cobolt is non-numeric.
2014-12-20T20:28:31.752943 tid7212 [IFO,App] java.lang.NumberFormatException: For input string: "557312021430771840000000000000000000000000000000000000000000%.4f"
[ ] at sun.misc.FloatingDecimal.readJavaFormatString(FloatingDecimal.java:1222)
[ ] at java.lang.Double.parseDouble(Double.java:510)
[ ] at spim.setup.Device.getPropertyDouble(Device.java:116)
[ ] at spim.setup.Cobolt.getPower(Cobolt.java:27)
[ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1255)
[ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:94)
[ ] at spim.SPIMAcquisition$18.run(SPIMAcquisition.java:1021)
[ ] at java.util.TimerThread.mainLoop(Timer.java:512)
[ ] at java.util.TimerThread.run(Timer.java:462)
2014-12-20T20:28:31.764944 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:31.964956 tid7212 [dbg,dev:COM3] GetAnswer # retries = 201
2014-12-20T20:28:32.164967 tid7212 [dbg,dev:COM3] GetAnswer # retries = 401
2014-12-20T20:28:32.264973 tid7212 [IFO,dev:COM3] TERM_TIMEOUT error occured!
2014-12-20T20:28:32.264973 tid7212 [ERR,Core] Error occurred in device COM3: Error in device COM3: Error code 107 (6b hex).
2014-12-20T20:28:32.264973 tid7212 [IFO,App] "PowerSetpoint" on Cobolt is non-numeric.
2014-12-20T20:28:32.264973 tid7212 [IFO,App] java.lang.NumberFormatException: For input string: "557312021430771840000000000000000000000000000000000000000000%.4f"
[ ] at sun.misc.FloatingDecimal.readJavaFormatString(FloatingDecimal.java:1222)
[ ] at java.lang.Double.parseDouble(Double.java:510)
[ ] at spim.setup.Device.getPropertyDouble(Device.java:116)
[ ] at spim.setup.Cobolt.getPower(Cobolt.java:27)
[ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1255)
[ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:94)
[ ] at spim.SPIMAcquisition$18.run(SPIMAcquisition.java:1021)
[ ] at java.util.TimerThread.mainLoop(Timer.java:512)
[ ] at java.util.TimerThread.run(Timer.java:462)
2014-12-20T20:28:32.276973 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:32.476985 tid7212 [dbg,dev:COM3] GetAnswer # retries = 199
2014-12-20T20:28:32.676996 tid7212 [dbg,dev:COM3] GetAnswer # retries = 395
2014-12-20T20:28:32.777002 tid7212 [IFO,dev:COM3] TERM_TIMEOUT error occured!
2014-12-20T20:28:32.777002 tid7212 [ERR,Core] Error occurred in device COM3: Error in device COM3: Error code 107 (6b hex).
2014-12-20T20:28:32.777002 tid7212 [IFO,App] "PowerSetpoint" on Cobolt is non-numeric.
2014-12-20T20:28:32.777002 tid7212 [IFO,App] java.lang.NumberFormatException: For input string: "557312021430771840000000000000000000000000000000000000000000%.4f"
[ ] at sun.misc.FloatingDecimal.readJavaFormatString(FloatingDecimal.java:1222)
[ ] at java.lang.Double.parseDouble(Double.java:510)
[ ] at spim.setup.Device.getPropertyDouble(Device.java:116)
[ ] at spim.setup.Cobolt.getPower(Cobolt.java:27)
[ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1255)
[ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:94)
[ ] at spim.SPIMAcquisition$18.run(SPIMAcquisition.java:1021)
[ ] at java.util.TimerThread.mainLoop(Timer.java:512)
[ ] at java.util.TimerThread.run(Timer.java:462)
2014-12-20T20:28:32.789003 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:32.989014 tid7212 [dbg,dev:COM3] GetAnswer # retries = 200
2014-12-20T20:28:33.189026 tid7212 [dbg,dev:COM3] GetAnswer # retries = 399
2014-12-20T20:28:33.289031 tid7212 [IFO,dev:COM3] TERM_TIMEOUT error occured!
2014-12-20T20:28:33.289031 tid7212 [ERR,Core] Error occurred in device COM3: Error in device COM3: Error code 107 (6b hex).
2014-12-20T20:28:33.289031 tid7212 [IFO,App] "PowerSetpoint" on Cobolt is non-numeric.
2014-12-20T20:28:33.289031 tid7212 [IFO,App] java.lang.NumberFormatException: For input string: "557312021430771840000000000000000000000000000000000000000000%.4f"
[ ] at sun.misc.FloatingDecimal.readJavaFormatString(FloatingDecimal.java:1222)
[ ] at java.lang.Double.parseDouble(Double.java:510)
[ ] at spim.setup.Device.getPropertyDouble(Device.java:116)
[ ] at spim.setup.Cobolt.getPower(Cobolt.java:27)
[ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1255)
[ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:94)
[ ] at spim.SPIMAcquisition$18.run(SPIMAcquisition.java:1021)
[ ] at java.util.TimerThread.mainLoop(Timer.java:512)
[ ] at java.util.TimerThread.run(Timer.java:462)
2014-12-20T20:28:33.301032 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:33.501043 tid7212 [dbg,dev:COM3] GetAnswer # retries = 201
2014-12-20T20:28:33.701055 tid7212 [dbg,dev:COM3] GetAnswer # retries = 401
2014-12-20T20:28:33.801061 tid7212 [IFO,dev:COM3] TERM_TIMEOUT error occured!
2014-12-20T20:28:33.801061 tid7212 [ERR,Core] Error occurred in device COM3: Error in device COM3: Error code 107 (6b hex).
2014-12-20T20:28:33.801061 tid7212 [IFO,App] "PowerSetpoint" on Cobolt is non-numeric.
2014-12-20T20:28:33.801061 tid7212 [IFO,App] java.lang.NumberFormatException: For input string: "557312021430771840000000000000000000000000000000000000000000%.4f"
[ ] at sun.misc.FloatingDecimal.readJavaFormatString(FloatingDecimal.java:1222)
[ ] at java.lang.Double.parseDouble(Double.java:510)
[ ] at spim.setup.Device.getPropertyDouble(Device.java:116)
[ ] at spim.setup.Cobolt.getPower(Cobolt.java:27)
[ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1255)
[ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:94)
[ ] at spim.SPIMAcquisition$18.run(SPIMAcquisition.java:1021)
[ ] at java.util.TimerThread.mainLoop(Timer.java:512)
[ ] at java.util.TimerThread.run(Timer.java:462)
2014-12-20T20:28:33.813061 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:34.013073 tid7212 [dbg,dev:COM3] GetAnswer # retries = 201
2014-12-20T20:28:34.170082 tid5872 [IFO,App] [UI] JButton "Auto" clicked in MMStudioMainFrame.
2014-12-20T20:28:34.213084 tid7212 [dbg,dev:COM3] GetAnswer # retries = 401
2014-12-20T20:28:34.313090 tid7212 [IFO,dev:COM3] TERM_TIMEOUT error occured!
2014-12-20T20:28:34.313090 tid7212 [ERR,Core] Error occurred in device COM3: Error in device COM3: Error code 107 (6b hex).
2014-12-20T20:28:34.313090 tid7212 [IFO,App] "PowerSetpoint" on Cobolt is non-numeric.
2014-12-20T20:28:34.313090 tid7212 [IFO,App] java.lang.NumberFormatException: For input string: "557312021430771840000000000000000000000000000000000000000000%.4f"
[ ] at sun.misc.FloatingDecimal.readJavaFormatString(FloatingDecimal.java:1222)
[ ] at java.lang.Double.parseDouble(Double.java:510)
[ ] at spim.setup.Device.getPropertyDouble(Device.java:116)
[ ] at spim.setup.Cobolt.getPower(Cobolt.java:27)
[ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1255)
[ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:94)
[ ] at spim.SPIMAcquisition$18.run(SPIMAcquisition.java:1021)
[ ] at java.util.TimerThread.mainLoop(Timer.java:512)
[ ] at java.util.TimerThread.run(Timer.java:462)
2014-12-20T20:28:34.325091 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:34.525102 tid7212 [dbg,dev:COM3] GetAnswer # retries = 200
2014-12-20T20:28:34.725113 tid7212 [dbg,dev:COM3] GetAnswer # retries = 401
2014-12-20T20:28:34.825119 tid7212 [IFO,dev:COM3] TERM_TIMEOUT error occured!
2014-12-20T20:28:34.825119 tid7212 [ERR,Core] Error occurred in device COM3: Error in device COM3: Error code 107 (6b hex).
2014-12-20T20:28:34.825119 tid7212 [IFO,App] "PowerSetpoint" on Cobolt is non-numeric.
2014-12-20T20:28:34.825119 tid7212 [IFO,App] java.lang.NumberFormatException: For input string: "557312021430771840000000000000000000000000000000000000000000%.4f"
[ ] at sun.misc.FloatingDecimal.readJavaFormatString(FloatingDecimal.java:1222)
[ ] at java.lang.Double.parseDouble(Double.java:510)
[ ] at spim.setup.Device.getPropertyDouble(Device.java:116)
[ ] at spim.setup.Cobolt.getPower(Cobolt.java:27)
[ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1255)
[ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:94)
[ ] at spim.SPIMAcquisition$18.run(SPIMAcquisition.java:1021)
[ ] at java.util.TimerThread.mainLoop(Timer.java:512)
[ ] at java.util.TimerThread.run(Timer.java:462)
2014-12-20T20:28:34.837120 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:35.037131 tid7212 [dbg,dev:COM3] GetAnswer # retries = 197
2014-12-20T20:28:35.237143 tid7212 [dbg,dev:COM3] GetAnswer # retries = 398
2014-12-20T20:28:35.337148 tid7212 [IFO,dev:COM3] TERM_TIMEOUT error occured!
2014-12-20T20:28:35.337148 tid7212 [ERR,Core] Error occurred in device COM3: Error in device COM3: Error code 107 (6b hex).
2014-12-20T20:28:35.337148 tid7212 [IFO,App] "PowerSetpoint" on Cobolt is non-numeric.
2014-12-20T20:28:35.337148 tid7212 [IFO,App] java.lang.NumberFormatException: For input string: "557312021430771840000000000000000000000000000000000000000000%.4f"
[ ] at sun.misc.FloatingDecimal.readJavaFormatString(FloatingDecimal.java:1222)
[ ] at java.lang.Double.parseDouble(Double.java:510)
[ ] at spim.setup.Device.getPropertyDouble(Device.java:116)
[ ] at spim.setup.Cobolt.getPower(Cobolt.java:27)
[ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1255)
[ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:94)
[ ] at spim.SPIMAcquisition$18.run(SPIMAcquisition.java:1021)
[ ] at java.util.TimerThread.mainLoop(Timer.java:512)
[ ] at java.util.TimerThread.run(Timer.java:462)
2014-12-20T20:28:35.349149 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:35.549161 tid7212 [dbg,dev:COM3] GetAnswer # retries = 200
2014-12-20T20:28:35.749172 tid7212 [dbg,dev:COM3] GetAnswer # retries = 401
2014-12-20T20:28:35.849178 tid7212 [IFO,dev:COM3] TERM_TIMEOUT error occured!
2014-12-20T20:28:35.849178 tid7212 [ERR,Core] Error occurred in device COM3: Error in device COM3: Error code 107 (6b hex).
2014-12-20T20:28:35.849178 tid7212 [IFO,App] "PowerSetpoint" on Cobolt is non-numeric.
2014-12-20T20:28:35.849178 tid7212 [IFO,App] java.lang.NumberFormatException: For input string: "557312021430771840000000000000000000000000000000000000000000%.4f"
[ ] at sun.misc.FloatingDecimal.readJavaFormatString(FloatingDecimal.java:1222)
[ ] at java.lang.Double.parseDouble(Double.java:510)
[ ] at spim.setup.Device.getPropertyDouble(Device.java:116)
[ ] at spim.setup.Cobolt.getPower(Cobolt.java:27)
[ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1255)
[ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:94)
[ ] at spim.SPIMAcquisition$18.run(SPIMAcquisition.java:1021)
[ ] at java.util.TimerThread.mainLoop(Timer.java:512)
[ ] at java.util.TimerThread.run(Timer.java:462)
2014-12-20T20:28:35.861178 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:36.061190 tid7212 [dbg,dev:COM3] GetAnswer # retries = 197
2014-12-20T20:28:36.261201 tid7212 [dbg,dev:COM3] GetAnswer # retries = 397
2014-12-20T20:28:36.361207 tid7212 [IFO,dev:COM3] TERM_TIMEOUT error occured!
2014-12-20T20:28:36.361207 tid7212 [ERR,Core] Error occurred in device COM3: Error in device COM3: Error code 107 (6b hex).
2014-12-20T20:28:36.361207 tid7212 [IFO,App] "PowerSetpoint" on Cobolt is non-numeric.
2014-12-20T20:28:36.361207 tid7212 [IFO,App] java.lang.NumberFormatException: For input string: "557312021430771840000000000000000000000000000000000000000000%.4f"
[ ] at sun.misc.FloatingDecimal.readJavaFormatString(FloatingDecimal.java:1222)
[ ] at java.lang.Double.parseDouble(Double.java:510)
[ ] at spim.setup.Device.getPropertyDouble(Device.java:116)
[ ] at spim.setup.Cobolt.getPower(Cobolt.java:27)
[ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1255)
[ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:94)
[ ] at spim.SPIMAcquisition$18.run(SPIMAcquisition.java:1021)
[ ] at java.util.TimerThread.mainLoop(Timer.java:512)
[ ] at java.util.TimerThread.run(Timer.java:462)
2014-12-20T20:28:36.373208 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:36.573219 tid7212 [dbg,dev:COM3] GetAnswer # retries = 200
2014-12-20T20:28:36.773231 tid7212 [dbg,dev:COM3] GetAnswer # retries = 396
2014-12-20T20:28:36.873236 tid7212 [IFO,dev:COM3] TERM_TIMEOUT error occured!
2014-12-20T20:28:36.873236 tid7212 [ERR,Core] Error occurred in device COM3: Error in device COM3: Error code 107 (6b hex).
2014-12-20T20:28:36.873236 tid7212 [IFO,App] "PowerSetpoint" on Cobolt is non-numeric.
2014-12-20T20:28:36.873236 tid7212 [IFO,App] java.lang.NumberFormatException: For input string: "557312021430771840000000000000000000000000000000000000000000%.4f"
[ ] at sun.misc.FloatingDecimal.readJavaFormatString(FloatingDecimal.java:1222)
[ ] at java.lang.Double.parseDouble(Double.java:510)
[ ] at spim.setup.Device.getPropertyDouble(Device.java:116)
[ ] at spim.setup.Cobolt.getPower(Cobolt.java:27)
[ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1255)
[ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:94)
[ ] at spim.SPIMAcquisition$18.run(SPIMAcquisition.java:1021)
[ ] at java.util.TimerThread.mainLoop(Timer.java:512)
[ ] at java.util.TimerThread.run(Timer.java:462)
2014-12-20T20:28:36.885237 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:37.085248 tid7212 [dbg,dev:COM3] GetAnswer # retries = 199
2014-12-20T20:28:37.285260 tid7212 [dbg,dev:COM3] GetAnswer # retries = 399
2014-12-20T20:28:37.385266 tid7212 [IFO,dev:COM3] TERM_TIMEOUT error occured!
2014-12-20T20:28:37.385266 tid7212 [ERR,Core] Error occurred in device COM3: Error in device COM3: Error code 107 (6b hex).
2014-12-20T20:28:37.385266 tid7212 [IFO,App] "PowerSetpoint" on Cobolt is non-numeric.
2014-12-20T20:28:37.385266 tid7212 [IFO,App] java.lang.NumberFormatException: For input string: "557312021430771840000000000000000000000000000000000000000000%.4f"
[ ] at sun.misc.FloatingDecimal.readJavaFormatString(FloatingDecimal.java:1222)
[ ] at java.lang.Double.parseDouble(Double.java:510)
[ ] at spim.setup.Device.getPropertyDouble(Device.java:116)
[ ] at spim.setup.Cobolt.getPower(Cobolt.java:27)
[ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1255)
[ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:94)
[ ] at spim.SPIMAcquisition$18.run(SPIMAcquisition.java:1021)
[ ] at java.util.TimerThread.mainLoop(Timer.java:512)
[ ] at java.util.TimerThread.run(Timer.java:462)
2014-12-20T20:28:37.397266 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:37.597278 tid7212 [dbg,dev:COM3] GetAnswer # retries = 201
2014-12-20T20:28:37.797289 tid7212 [dbg,dev:COM3] GetAnswer # retries = 402
2014-12-20T20:28:37.897295 tid7212 [IFO,dev:COM3] TERM_TIMEOUT error occured!
2014-12-20T20:28:37.897295 tid7212 [ERR,Core] Error occurred in device COM3: Error in device COM3: Error code 107 (6b hex).
2014-12-20T20:28:37.897295 tid7212 [IFO,App] "PowerSetpoint" on Cobolt is non-numeric.
2014-12-20T20:28:37.897295 tid7212 [IFO,App] java.lang.NumberFormatException: For input string: "557312021430771840000000000000000000000000000000000000000000%.4f"
[ ] at sun.misc.FloatingDecimal.readJavaFormatString(FloatingDecimal.java:1222)
[ ] at java.lang.Double.parseDouble(Double.java:510)
[ ] at spim.setup.Device.getPropertyDouble(Device.java:116)
[ ] at spim.setup.Cobolt.getPower(Cobolt.java:27)
[ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1255)
[ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:94)
[ ] at spim.SPIMAcquisition$18.run(SPIMAcquisition.java:1021)
[ ] at java.util.TimerThread.mainLoop(Timer.java:512)
[ ] at java.util.TimerThread.run(Timer.java:462)
2014-12-20T20:28:37.909296 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:38.109307 tid7212 [dbg,dev:COM3] GetAnswer # retries = 199
2014-12-20T20:28:38.309318 tid7212 [dbg,dev:COM3] GetAnswer # retries = 399
2014-12-20T20:28:38.409324 tid7212 [IFO,dev:COM3] TERM_TIMEOUT error occured!
2014-12-20T20:28:38.409324 tid7212 [ERR,Core] Error occurred in device COM3: Error in device COM3: Error code 107 (6b hex).
2014-12-20T20:28:38.409324 tid7212 [IFO,App] "PowerSetpoint" on Cobolt is non-numeric.
2014-12-20T20:28:38.409324 tid7212 [IFO,App] java.lang.NumberFormatException: For input string: "557312021430771840000000000000000000000000000000000000000000%.4f"
[ ] at sun.misc.FloatingDecimal.readJavaFormatString(FloatingDecimal.java:1222)
[ ] at java.lang.Double.parseDouble(Double.java:510)
[ ] at spim.setup.Device.getPropertyDouble(Device.java:116)
[ ] at spim.setup.Cobolt.getPower(Cobolt.java:27)
[ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1255)
[ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:94)
[ ] at spim.SPIMAcquisition$18.run(SPIMAcquisition.java:1021)
[ ] at java.util.TimerThread.mainLoop(Timer.java:512)
[ ] at java.util.TimerThread.run(Timer.java:462)
2014-12-20T20:28:38.421325 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:38.621336 tid7212 [dbg,dev:COM3] GetAnswer # retries = 201
2014-12-20T20:28:38.821348 tid7212 [dbg,dev:COM3] GetAnswer # retries = 400
2014-12-20T20:28:38.921353 tid7212 [IFO,dev:COM3] TERM_TIMEOUT error occured!
2014-12-20T20:28:38.921353 tid7212 [ERR,Core] Error occurred in device COM3: Error in device COM3: Error code 107 (6b hex).
2014-12-20T20:28:38.921353 tid7212 [IFO,App] "PowerSetpoint" on Cobolt is non-numeric.
2014-12-20T20:28:38.921353 tid7212 [IFO,App] java.lang.NumberFormatException: For input string: "557312021430771840000000000000000000000000000000000000000000%.4f"
[ ] at sun.misc.FloatingDecimal.readJavaFormatString(FloatingDecimal.java:1222)
[ ] at java.lang.Double.parseDouble(Double.java:510)
[ ] at spim.setup.Device.getPropertyDouble(Device.java:116)
[ ] at spim.setup.Cobolt.getPower(Cobolt.java:27)
[ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1255)
[ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:94)
[ ] at spim.SPIMAcquisition$18.run(SPIMAcquisition.java:1021)
[ ] at java.util.TimerThread.mainLoop(Timer.java:512)
[ ] at java.util.TimerThread.run(Timer.java:462)
2014-12-20T20:28:38.933354 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:39.133366 tid7212 [dbg,dev:COM3] GetAnswer # retries = 201
2014-12-20T20:28:39.333377 tid7212 [dbg,dev:COM3] GetAnswer # retries = 399
2014-12-20T20:28:39.433383 tid7212 [IFO,dev:COM3] TERM_TIMEOUT error occured!
2014-12-20T20:28:39.433383 tid7212 [ERR,Core] Error occurred in device COM3: Error in device COM3: Error code 107 (6b hex).
2014-12-20T20:28:39.433383 tid7212 [IFO,App] "PowerSetpoint" on Cobolt is non-numeric.
2014-12-20T20:28:39.433383 tid7212 [IFO,App] java.lang.NumberFormatException: For input string: "557312021430771840000000000000000000000000000000000000000000%.4f"
[ ] at sun.misc.FloatingDecimal.readJavaFormatString(FloatingDecimal.java:1222)
[ ] at java.lang.Double.parseDouble(Double.java:510)
[ ] at spim.setup.Device.getPropertyDouble(Device.java:116)
[ ] at spim.setup.Cobolt.getPower(Cobolt.java:27)
[ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1255)
[ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:94)
[ ] at spim.SPIMAcquisition$18.run(SPIMAcquisition.java:1021)
[ ] at java.util.TimerThread.mainLoop(Timer.java:512)
[ ] at java.util.TimerThread.run(Timer.java:462)
2014-12-20T20:28:39.445383 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:39.645395 tid7212 [dbg,dev:COM3] GetAnswer # retries = 198
2014-12-20T20:28:39.845406 tid7212 [dbg,dev:COM3] GetAnswer # retries = 397
2014-12-20T20:28:39.945412 tid7212 [IFO,dev:COM3] TERM_TIMEOUT error occured!
2014-12-20T20:28:39.945412 tid7212 [ERR,Core] Error occurred in device COM3: Error in device COM3: Error code 107 (6b hex).
2014-12-20T20:28:39.945412 tid7212 [IFO,App] "PowerSetpoint" on Cobolt is non-numeric.
2014-12-20T20:28:39.945412 tid7212 [IFO,App] java.lang.NumberFormatException: For input string: "557312021430771840000000000000000000000000000000000000000000%.4f"
[ ] at sun.misc.FloatingDecimal.readJavaFormatString(FloatingDecimal.java:1222)
[ ] at java.lang.Double.parseDouble(Double.java:510)
[ ] at spim.setup.Device.getPropertyDouble(Device.java:116)
[ ] at spim.setup.Cobolt.getPower(Cobolt.java:27)
[ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1255)
[ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:94)
[ ] at spim.SPIMAcquisition$18.run(SPIMAcquisition.java:1021)
[ ] at java.util.TimerThread.mainLoop(Timer.java:512)
[ ] at java.util.TimerThread.run(Timer.java:462)
2014-12-20T20:28:39.957413 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:40.157424 tid7212 [dbg,dev:COM3] GetAnswer # retries = 197
2014-12-20T20:28:40.357436 tid7212 [dbg,dev:COM3] GetAnswer # retries = 391
2014-12-20T20:28:40.457441 tid7212 [IFO,dev:COM3] TERM_TIMEOUT error occured!
2014-12-20T20:28:40.457441 tid7212 [ERR,Core] Error occurred in device COM3: Error in device COM3: Error code 107 (6b hex).
2014-12-20T20:28:40.457441 tid7212 [IFO,App] "PowerSetpoint" on Cobolt is non-numeric.
2014-12-20T20:28:40.457441 tid7212 [IFO,App] java.lang.NumberFormatException: For input string: "557312021430771840000000000000000000000000000000000000000000%.4f"
[ ] at sun.misc.FloatingDecimal.readJavaFormatString(FloatingDecimal.java:1222)
[ ] at java.lang.Double.parseDouble(Double.java:510)
[ ] at spim.setup.Device.getPropertyDouble(Device.java:116)
[ ] at spim.setup.Cobolt.getPower(Cobolt.java:27)
[ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1255)
[ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:94)
[ ] at spim.SPIMAcquisition$18.run(SPIMAcquisition.java:1021)
[ ] at java.util.TimerThread.mainLoop(Timer.java:512)
[ ] at java.util.TimerThread.run(Timer.java:462)
2014-12-20T20:28:40.468442 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:40.669453 tid7212 [dbg,dev:COM3] GetAnswer # retries = 199
2014-12-20T20:28:40.869465 tid7212 [dbg,dev:COM3] GetAnswer # retries = 400
2014-12-20T20:28:40.969471 tid7212 [IFO,dev:COM3] TERM_TIMEOUT error occured!
2014-12-20T20:28:40.969471 tid7212 [ERR,Core] Error occurred in device COM3: Error in device COM3: Error code 107 (6b hex).
2014-12-20T20:28:40.969471 tid7212 [IFO,App] "PowerSetpoint" on Cobolt is non-numeric.
2014-12-20T20:28:40.969471 tid7212 [IFO,App] java.lang.NumberFormatException: For input string: "557312021430771840000000000000000000000000000000000000000000%.4f"
[ ] at sun.misc.FloatingDecimal.readJavaFormatString(FloatingDecimal.java:1222)
[ ] at java.lang.Double.parseDouble(Double.java:510)
[ ] at spim.setup.Device.getPropertyDouble(Device.java:116)
[ ] at spim.setup.Cobolt.getPower(Cobolt.java:27)
[ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1255)
[ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:94)
[ ] at spim.SPIMAcquisition$18.run(SPIMAcquisition.java:1021)
[ ] at java.util.TimerThread.mainLoop(Timer.java:512)
[ ] at java.util.TimerThread.run(Timer.java:462)
2014-12-20T20:28:40.980471 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:41.180483 tid7212 [dbg,dev:COM3] GetAnswer # retries = 195
2014-12-20T20:28:41.380494 tid7212 [dbg,dev:COM3] GetAnswer # retries = 396
2014-12-20T20:28:41.480500 tid7212 [IFO,dev:COM3] TERM_TIMEOUT error occured!
2014-12-20T20:28:41.480500 tid7212 [ERR,Core] Error occurred in device COM3: Error in device COM3: Error code 107 (6b hex).
2014-12-20T20:28:41.480500 tid7212 [IFO,App] "PowerSetpoint" on Cobolt is non-numeric.
2014-12-20T20:28:41.480500 tid7212 [IFO,App] java.lang.NumberFormatException: For input string: "557312021430771840000000000000000000000000000000000000000000%.4f"
[ ] at sun.misc.FloatingDecimal.readJavaFormatString(FloatingDecimal.java:1222)
[ ] at java.lang.Double.parseDouble(Double.java:510)
[ ] at spim.setup.Device.getPropertyDouble(Device.java:116)
[ ] at spim.setup.Cobolt.getPower(Cobolt.java:27)
[ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1255)
[ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:94)
[ ] at spim.SPIMAcquisition$18.run(SPIMAcquisition.java:1021)
[ ] at java.util.TimerThread.mainLoop(Timer.java:512)
[ ] at java.util.TimerThread.run(Timer.java:462)
2014-12-20T20:28:41.492500 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:41.692512 tid7212 [dbg,dev:COM3] GetAnswer # retries = 198
2014-12-20T20:28:41.892523 tid7212 [dbg,dev:COM3] GetAnswer # retries = 398
2014-12-20T20:28:41.992529 tid7212 [IFO,dev:COM3] TERM_TIMEOUT error occured!
2014-12-20T20:28:41.992529 tid7212 [ERR,Core] Error occurred in device COM3: Error in device COM3: Error code 107 (6b hex).
2014-12-20T20:28:41.992529 tid7212 [IFO,App] "PowerSetpoint" on Cobolt is non-numeric.
2014-12-20T20:28:41.992529 tid7212 [IFO,App] java.lang.NumberFormatException: For input string: "557312021430771840000000000000000000000000000000000000000000%.4f"
[ ] at sun.misc.FloatingDecimal.readJavaFormatString(FloatingDecimal.java:1222)
[ ] at java.lang.Double.parseDouble(Double.java:510)
[ ] at spim.setup.Device.getPropertyDouble(Device.java:116)
[ ] at spim.setup.Cobolt.getPower(Cobolt.java:27)
[ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1255)
[ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:94)
[ ] at spim.SPIMAcquisition$18.run(SPIMAcquisition.java:1021)
[ ] at java.util.TimerThread.mainLoop(Timer.java:512)
[ ] at java.util.TimerThread.run(Timer.java:462)
2014-12-20T20:28:42.004530 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:42.204541 tid7212 [dbg,dev:COM3] GetAnswer # retries = 199
2014-12-20T20:28:42.404553 tid7212 [dbg,dev:COM3] GetAnswer # retries = 400
2014-12-20T20:28:42.504558 tid7212 [IFO,dev:COM3] TERM_TIMEOUT error occured!
2014-12-20T20:28:42.504558 tid7212 [ERR,Core] Error occurred in device COM3: Error in device COM3: Error code 107 (6b hex).
2014-12-20T20:28:42.504558 tid7212 [IFO,App] "PowerSetpoint" on Cobolt is non-numeric.
2014-12-20T20:28:42.504558 tid7212 [IFO,App] java.lang.NumberFormatException: For input string: "557312021430771840000000000000000000000000000000000000000000%.4f"
[ ] at sun.misc.FloatingDecimal.readJavaFormatString(FloatingDecimal.java:1222)
[ ] at java.lang.Double.parseDouble(Double.java:510)
[ ] at spim.setup.Device.getPropertyDouble(Device.java:116)
[ ] at spim.setup.Cobolt.getPower(Cobolt.java:27)
[ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1255)
[ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:94)
[ ] at spim.SPIMAcquisition$18.run(SPIMAcquisition.java:1021)
[ ] at java.util.TimerThread.mainLoop(Timer.java:512)
[ ] at java.util.TimerThread.run(Timer.java:462)
2014-12-20T20:28:42.516559 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:42.716570 tid7212 [dbg,dev:COM3] GetAnswer # retries = 200
2014-12-20T20:28:42.916582 tid7212 [dbg,dev:COM3] GetAnswer # retries = 401
2014-12-20T20:28:43.016588 tid7212 [IFO,dev:COM3] TERM_TIMEOUT error occured!
2014-12-20T20:28:43.016588 tid7212 [ERR,Core] Error occurred in device COM3: Error in device COM3: Error code 107 (6b hex).
2014-12-20T20:28:43.016588 tid7212 [IFO,App] "PowerSetpoint" on Cobolt is non-numeric.
2014-12-20T20:28:43.016588 tid7212 [IFO,App] java.lang.NumberFormatException: For input string: "557312021430771840000000000000000000000000000000000000000000%.4f"
[ ] at sun.misc.FloatingDecimal.readJavaFormatString(FloatingDecimal.java:1222)
[ ] at java.lang.Double.parseDouble(Double.java:510)
[ ] at spim.setup.Device.getPropertyDouble(Device.java:116)
[ ] at spim.setup.Cobolt.getPower(Cobolt.java:27)
[ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1255)
[ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:94)
[ ] at spim.SPIMAcquisition$18.run(SPIMAcquisition.java:1021)
[ ] at java.util.TimerThread.mainLoop(Timer.java:512)
[ ] at java.util.TimerThread.run(Timer.java:462)
2014-12-20T20:28:43.028588 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:43.228600 tid7212 [dbg,dev:COM3] GetAnswer # retries = 201
2014-12-20T20:28:43.428611 tid7212 [dbg,dev:COM3] GetAnswer # retries = 402
2014-12-20T20:28:43.528617 tid7212 [IFO,dev:COM3] TERM_TIMEOUT error occured!
2014-12-20T20:28:43.528617 tid7212 [ERR,Core] Error occurred in device COM3: Error in device COM3: Error code 107 (6b hex).
2014-12-20T20:28:43.528617 tid7212 [IFO,App] "PowerSetpoint" on Cobolt is non-numeric.
2014-12-20T20:28:43.528617 tid7212 [IFO,App] java.lang.NumberFormatException: For input string: "557312021430771840000000000000000000000000000000000000000000%.4f"
[ ] at sun.misc.FloatingDecimal.readJavaFormatString(FloatingDecimal.java:1222)
[ ] at java.lang.Double.parseDouble(Double.java:510)
[ ] at spim.setup.Device.getPropertyDouble(Device.java:116)
[ ] at spim.setup.Cobolt.getPower(Cobolt.java:27)
[ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1255)
[ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:94)
[ ] at spim.SPIMAcquisition$18.run(SPIMAcquisition.java:1021)
[ ] at java.util.TimerThread.mainLoop(Timer.java:512)
[ ] at java.util.TimerThread.run(Timer.java:462)
2014-12-20T20:28:43.540618 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:43.740629 tid7212 [dbg,dev:COM3] GetAnswer # retries = 200
2014-12-20T20:28:43.940640 tid7212 [dbg,dev:COM3] GetAnswer # retries = 401
2014-12-20T20:28:44.040646 tid7212 [IFO,dev:COM3] TERM_TIMEOUT error occured!
2014-12-20T20:28:44.040646 tid7212 [ERR,Core] Error occurred in device COM3: Error in device COM3: Error code 107 (6b hex).
2014-12-20T20:28:44.040646 tid7212 [IFO,App] "PowerSetpoint" on Cobolt is non-numeric.
2014-12-20T20:28:44.040646 tid7212 [IFO,App] java.lang.NumberFormatException: For input string: "557312021430771840000000000000000000000000000000000000000000%.4f"
[ ] at sun.misc.FloatingDecimal.readJavaFormatString(FloatingDecimal.java:1222)
[ ] at java.lang.Double.parseDouble(Double.java:510)
[ ] at spim.setup.Device.getPropertyDouble(Device.java:116)
[ ] at spim.setup.Cobolt.getPower(Cobolt.java:27)
[ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1255)
[ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:94)
[ ] at spim.SPIMAcquisition$18.run(SPIMAcquisition.java:1021)
[ ] at java.util.TimerThread.mainLoop(Timer.java:512)
[ ] at java.util.TimerThread.run(Timer.java:462)
2014-12-20T20:28:44.052647 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:44.252658 tid7212 [dbg,dev:COM3] GetAnswer # retries = 200
2014-12-20T20:28:44.452670 tid7212 [dbg,dev:COM3] GetAnswer # retries = 399
2014-12-20T20:28:44.552676 tid7212 [IFO,dev:COM3] TERM_TIMEOUT error occured!
2014-12-20T20:28:44.552676 tid7212 [ERR,Core] Error occurred in device COM3: Error in device COM3: Error code 107 (6b hex).
2014-12-20T20:28:44.553676 tid7212 [IFO,App] "PowerSetpoint" on Cobolt is non-numeric.
2014-12-20T20:28:44.553676 tid7212 [IFO,App] java.lang.NumberFormatException: For input string: "557312021430771840000000000000000000000000000000000000000000%.4f"
[ ] at sun.misc.FloatingDecimal.readJavaFormatString(FloatingDecimal.java:1222)
[ ] at java.lang.Double.parseDouble(Double.java:510)
[ ] at spim.setup.Device.getPropertyDouble(Device.java:116)
[ ] at spim.setup.Cobolt.getPower(Cobolt.java:27)
[ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1255)
[ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:94)
[ ] at spim.SPIMAcquisition$18.run(SPIMAcquisition.java:1021)
[ ] at java.util.TimerThread.mainLoop(Timer.java:512)
[ ] at java.util.TimerThread.run(Timer.java:462)
2014-12-20T20:28:44.564676 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:44.764688 tid7212 [dbg,dev:COM3] GetAnswer # retries = 200
2014-12-20T20:28:44.964699 tid7212 [dbg,dev:COM3] GetAnswer # retries = 401
2014-12-20T20:28:45.064705 tid7212 [IFO,dev:COM3] TERM_TIMEOUT error occured!
2014-12-20T20:28:45.064705 tid7212 [ERR,Core] Error occurred in device COM3: Error in device COM3: Error code 107 (6b hex).
2014-12-20T20:28:45.064705 tid7212 [IFO,App] "PowerSetpoint" on Cobolt is non-numeric.
2014-12-20T20:28:45.064705 tid7212 [IFO,App] java.lang.NumberFormatException: For input string: "557312021430771840000000000000000000000000000000000000000000%.4f"
[ ] at sun.misc.FloatingDecimal.readJavaFormatString(FloatingDecimal.java:1222)
[ ] at java.lang.Double.parseDouble(Double.java:510)
[ ] at spim.setup.Device.getPropertyDouble(Device.java:116)
[ ] at spim.setup.Cobolt.getPower(Cobolt.java:27)
[ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1255)
[ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:94)
[ ] at spim.SPIMAcquisition$18.run(SPIMAcquisition.java:1021)
[ ] at java.util.TimerThread.mainLoop(Timer.java:512)
[ ] at java.util.TimerThread.run(Timer.java:462)
2014-12-20T20:28:45.076705 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:45.276717 tid7212 [dbg,dev:COM3] GetAnswer # retries = 201
2014-12-20T20:28:45.476728 tid7212 [dbg,dev:COM3] GetAnswer # retries = 400
2014-12-20T20:28:45.576734 tid7212 [IFO,dev:COM3] TERM_TIMEOUT error occured!
2014-12-20T20:28:45.576734 tid7212 [ERR,Core] Error occurred in device COM3: Error in device COM3: Error code 107 (6b hex).
2014-12-20T20:28:45.576734 tid7212 [IFO,App] "PowerSetpoint" on Cobolt is non-numeric.
2014-12-20T20:28:45.576734 tid7212 [IFO,App] java.lang.NumberFormatException: For input string: "557312021430771840000000000000000000000000000000000000000000%.4f"
[ ] at sun.misc.FloatingDecimal.readJavaFormatString(FloatingDecimal.java:1222)
[ ] at java.lang.Double.parseDouble(Double.java:510)
[ ] at spim.setup.Device.getPropertyDouble(Device.java:116)
[ ] at spim.setup.Cobolt.getPower(Cobolt.java:27)
[ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1255)
[ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:94)
[ ] at spim.SPIMAcquisition$18.run(SPIMAcquisition.java:1021)
[ ] at java.util.TimerThread.mainLoop(Timer.java:512)
[ ] at java.util.TimerThread.run(Timer.java:462)
2014-12-20T20:28:45.588735 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:45.788746 tid7212 [dbg,dev:COM3] GetAnswer # retries = 201
2014-12-20T20:28:45.988758 tid7212 [dbg,dev:COM3] GetAnswer # retries = 402
2014-12-20T20:28:46.088763 tid7212 [IFO,dev:COM3] TERM_TIMEOUT error occured!
2014-12-20T20:28:46.088763 tid7212 [ERR,Core] Error occurred in device COM3: Error in device COM3: Error code 107 (6b hex).
2014-12-20T20:28:46.088763 tid5872 [dbg,dev:COM3] SetCommand -> l0\r
2014-12-20T20:28:46.088763 tid7212 [IFO,App] "PowerSetpoint" on Cobolt is non-numeric.
2014-12-20T20:28:46.088763 tid7212 [IFO,App] java.lang.NumberFormatException: For input string: "557312021430771840000000000000000000000000000000000000000000%.4f"
[ ] at sun.misc.FloatingDecimal.readJavaFormatString(FloatingDecimal.java:1222)
[ ] at java.lang.Double.parseDouble(Double.java:510)
[ ] at spim.setup.Device.getPropertyDouble(Device.java:116)
[ ] at spim.setup.Cobolt.getPower(Cobolt.java:27)
[ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1255)
[ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:94)
[ ] at spim.SPIMAcquisition$18.run(SPIMAcquisition.java:1021)
[ ] at java.util.TimerThread.mainLoop(Timer.java:512)
[ ] at java.util.TimerThread.run(Timer.java:462)
2014-12-20T20:28:46.288775 tid5872 [dbg,dev:COM3] GetAnswer # retries = 201
2014-12-20T20:28:46.488786 tid5872 [dbg,dev:COM3] GetAnswer # retries = 402
2014-12-20T20:28:46.588792 tid5872 [IFO,dev:COM3] TERM_TIMEOUT error occured!
2014-12-20T20:28:46.588792 tid5872 [ERR,Core] Error occurred in device COM3: Error in device COM3: Error code 107 (6b hex).
2014-12-20T20:28:46.588792 tid5872 [ERR,Core] Error occurred in device CMMCore::setShutterOpen(): Error in device Cobolt: Serial command failed. Is the device connected to the serial port?.
2014-12-20T20:28:46.588792 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:46.588792 tid5872 [IFO,App]
[ ] java.lang.Exception: Error in device Cobolt: Serial command failed. Is the device connected to the serial port?. in Thread[AWT-EventQueue-0,6,main]
[ ] at mmcorej.MMCoreJJNI.CMMCore_setShutterOpen__SWIG_0(Native Method)
[ ] at mmcorej.CMMCore.setShutterOpen(CMMCore.java:881)
[ ] at org.micromanager.MMStudioMainFrame.toggleShutter(MMStudioMainFrame.java:2228)
[ ] at org.micromanager.MMStudioMainFrame$7.run(MMStudioMainFrame.java:968)
[ ] at org.micromanager.utils.GUIUtils$4.actionPerformed(GUIUtils.java:404)
[ ] at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:1995)
[ ] at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2318)
[ ] at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:387)
[ ] at javax.swing.JToggleButton$ToggleButtonModel.setPressed(JToggleButton.java:291)
[ ] at javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:236)
[ ] at java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:272)
[ ] at java.awt.Component.processMouseEvent(Component.java:6289)
[ ] at javax.swing.JComponent.processMouseEvent(JComponent.java:3267)
[ ] at java.awt.Component.processEvent(Component.java:6054)
[ ] at java.awt.Container.processEvent(Container.java:2041)
[ ] at java.awt.Component.dispatchEventImpl(Component.java:4652)
[ ] at java.awt.Container.dispatchEventImpl(Container.java:2099)
[ ] at java.awt.Component.dispatchEvent(Component.java:4482)
[ ] at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4577)
[ ] at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4238)
[ ] at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4168)
[ ] at java.awt.Container.dispatchEventImpl(Container.java:2085)
[ ] at java.awt.Window.dispatchEventImpl(Window.java:2478)
[ ] at java.awt.Component.dispatchEvent(Component.java:4482)
[ ] at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:644)
[ ] at java.awt.EventQueue.access$000(EventQueue.java:85)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:603)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:601)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:617)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:615)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.awt.EventQueue.dispatchEvent(EventQueue.java:614)
[ ] at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269)
[ ] at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184)
[ ] at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161)
[ ] at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
2014-12-20T20:28:46.788803 tid7212 [dbg,dev:COM3] GetAnswer # retries = 197
2014-12-20T20:28:46.988815 tid7212 [dbg,dev:COM3] GetAnswer # retries = 397
2014-12-20T20:28:47.088821 tid7212 [IFO,dev:COM3] TERM_TIMEOUT error occured!
2014-12-20T20:28:47.088821 tid7212 [ERR,Core] Error occurred in device COM3: Error in device COM3: Error code 107 (6b hex).
2014-12-20T20:28:47.088821 tid7212 [IFO,App] "PowerSetpoint" on Cobolt is non-numeric.
2014-12-20T20:28:47.088821 tid7212 [IFO,App] java.lang.NumberFormatException: For input string: "557312021430771840000000000000000000000000000000000000000000%.4f"
[ ] at sun.misc.FloatingDecimal.readJavaFormatString(FloatingDecimal.java:1222)
[ ] at java.lang.Double.parseDouble(Double.java:510)
[ ] at spim.setup.Device.getPropertyDouble(Device.java:116)
[ ] at spim.setup.Cobolt.getPower(Cobolt.java:27)
[ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1255)
[ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:94)
[ ] at spim.SPIMAcquisition$18.run(SPIMAcquisition.java:1021)
[ ] at java.util.TimerThread.mainLoop(Timer.java:512)
[ ] at java.util.TimerThread.run(Timer.java:462)
2014-12-20T20:28:47.120822 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:47.320834 tid7212 [dbg,dev:COM3] GetAnswer # retries = 201
2014-12-20T20:28:47.520845 tid7212 [dbg,dev:COM3] GetAnswer # retries = 401
2014-12-20T20:28:47.620851 tid7212 [IFO,dev:COM3] TERM_TIMEOUT error occured!
2014-12-20T20:28:47.620851 tid7212 [ERR,Core] Error occurred in device COM3: Error in device COM3: Error code 107 (6b hex).
2014-12-20T20:28:47.620851 tid7212 [IFO,App] "PowerSetpoint" on Cobolt is non-numeric.
2014-12-20T20:28:47.620851 tid7212 [IFO,App] java.lang.NumberFormatException: For input string: "557312021430771840000000000000000000000000000000000000000000%.4f"
[ ] at sun.misc.FloatingDecimal.readJavaFormatString(FloatingDecimal.java:1222)
[ ] at java.lang.Double.parseDouble(Double.java:510)
[ ] at spim.setup.Device.getPropertyDouble(Device.java:116)
[ ] at spim.setup.Cobolt.getPower(Cobolt.java:27)
[ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1255)
[ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:94)
[ ] at spim.SPIMAcquisition$18.run(SPIMAcquisition.java:1021)
[ ] at java.util.TimerThread.mainLoop(Timer.java:512)
[ ] at java.util.TimerThread.run(Timer.java:462)
2014-12-20T20:28:47.636852 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:47.836863 tid7212 [dbg,dev:COM3] GetAnswer # retries = 200
2014-12-20T20:28:48.036875 tid7212 [dbg,dev:COM3] GetAnswer # retries = 400
2014-12-20T20:28:48.136881 tid7212 [IFO,dev:COM3] TERM_TIMEOUT error occured!
2014-12-20T20:28:48.136881 tid7212 [ERR,Core] Error occurred in device COM3: Error in device COM3: Error code 107 (6b hex).
2014-12-20T20:28:48.136881 tid7212 [IFO,App] "PowerSetpoint" on Cobolt is non-numeric.
2014-12-20T20:28:48.136881 tid7212 [IFO,App] java.lang.NumberFormatException: For input string: "557312021430771840000000000000000000000000000000000000000000%.4f"
[ ] at sun.misc.FloatingDecimal.readJavaFormatString(FloatingDecimal.java:1222)
[ ] at java.lang.Double.parseDouble(Double.java:510)
[ ] at spim.setup.Device.getPropertyDouble(Device.java:116)
[ ] at spim.setup.Cobolt.getPower(Cobolt.java:27)
[ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1255)
[ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:94)
[ ] at spim.SPIMAcquisition$18.run(SPIMAcquisition.java:1021)
[ ] at java.util.TimerThread.mainLoop(Timer.java:512)
[ ] at java.util.TimerThread.run(Timer.java:462)
2014-12-20T20:28:48.148881 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:48.348893 tid7212 [dbg,dev:COM3] GetAnswer # retries = 198
2014-12-20T20:28:48.548904 tid7212 [dbg,dev:COM3] GetAnswer # retries = 398
2014-12-20T20:28:48.648910 tid7212 [IFO,dev:COM3] TERM_TIMEOUT error occured!
2014-12-20T20:28:48.648910 tid7212 [ERR,Core] Error occurred in device COM3: Error in device COM3: Error code 107 (6b hex).
2014-12-20T20:28:48.648910 tid7212 [IFO,App] "PowerSetpoint" on Cobolt is non-numeric.
2014-12-20T20:28:48.648910 tid7212 [IFO,App] java.lang.NumberFormatException: For input string: "557312021430771840000000000000000000000000000000000000000000%.4f"
[ ] at sun.misc.FloatingDecimal.readJavaFormatString(FloatingDecimal.java:1222)
[ ] at java.lang.Double.parseDouble(Double.java:510)
[ ] at spim.setup.Device.getPropertyDouble(Device.java:116)
[ ] at spim.setup.Cobolt.getPower(Cobolt.java:27)
[ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1255)
[ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:94)
[ ] at spim.SPIMAcquisition$18.run(SPIMAcquisition.java:1021)
[ ] at java.util.TimerThread.mainLoop(Timer.java:512)
[ ] at java.util.TimerThread.run(Timer.java:462)
2014-12-20T20:28:48.660910 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:48.860922 tid7212 [dbg,dev:COM3] GetAnswer # retries = 199
2014-12-20T20:28:49.060933 tid7212 [dbg,dev:COM3] GetAnswer # retries = 398
2014-12-20T20:28:49.160939 tid7212 [IFO,dev:COM3] TERM_TIMEOUT error occured!
2014-12-20T20:28:49.160939 tid7212 [ERR,Core] Error occurred in device COM3: Error in device COM3: Error code 107 (6b hex).
2014-12-20T20:28:49.160939 tid7212 [IFO,App] "PowerSetpoint" on Cobolt is non-numeric.
2014-12-20T20:28:49.160939 tid7212 [IFO,App] java.lang.NumberFormatException: For input string: "557312021430771840000000000000000000000000000000000000000000%.4f"
[ ] at sun.misc.FloatingDecimal.readJavaFormatString(FloatingDecimal.java:1222)
[ ] at java.lang.Double.parseDouble(Double.java:510)
[ ] at spim.setup.Device.getPropertyDouble(Device.java:116)
[ ] at spim.setup.Cobolt.getPower(Cobolt.java:27)
[ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1255)
[ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:94)
[ ] at spim.SPIMAcquisition$18.run(SPIMAcquisition.java:1021)
[ ] at java.util.TimerThread.mainLoop(Timer.java:512)
[ ] at java.util.TimerThread.run(Timer.java:462)
2014-12-20T20:28:49.172940 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:49.372951 tid7212 [dbg,dev:COM3] GetAnswer # retries = 201
2014-12-20T20:28:49.572963 tid7212 [dbg,dev:COM3] GetAnswer # retries = 401
2014-12-20T20:28:49.672968 tid7212 [IFO,dev:COM3] TERM_TIMEOUT error occured!
2014-12-20T20:28:49.672968 tid7212 [ERR,Core] Error occurred in device COM3: Error in device COM3: Error code 107 (6b hex).
2014-12-20T20:28:49.674968 tid7212 [IFO,App] "PowerSetpoint" on Cobolt is non-numeric.
2014-12-20T20:28:49.674968 tid7212 [IFO,App] java.lang.NumberFormatException: For input string: "557312021430771840000000000000000000000000000000000000000000%.4f"
[ ] at sun.misc.FloatingDecimal.readJavaFormatString(FloatingDecimal.java:1222)
[ ] at java.lang.Double.parseDouble(Double.java:510)
[ ] at spim.setup.Device.getPropertyDouble(Device.java:116)
[ ] at spim.setup.Cobolt.getPower(Cobolt.java:27)
[ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1255)
[ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:94)
[ ] at spim.SPIMAcquisition$18.run(SPIMAcquisition.java:1021)
[ ] at java.util.TimerThread.mainLoop(Timer.java:512)
[ ] at java.util.TimerThread.run(Timer.java:462)
2014-12-20T20:28:49.684969 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:49.884980 tid7212 [dbg,dev:COM3] GetAnswer # retries = 200
2014-12-20T20:28:50.084992 tid7212 [dbg,dev:COM3] GetAnswer # retries = 401
2014-12-20T20:28:50.184998 tid7212 [IFO,dev:COM3] TERM_TIMEOUT error occured!
2014-12-20T20:28:50.184998 tid7212 [ERR,Core] Error occurred in device COM3: Error in device COM3: Error code 107 (6b hex).
2014-12-20T20:28:50.184998 tid7212 [IFO,App] "PowerSetpoint" on Cobolt is non-numeric.
2014-12-20T20:28:50.184998 tid7212 [IFO,App] java.lang.NumberFormatException: For input string: "557312021430771840000000000000000000000000000000000000000000%.4f"
[ ] at sun.misc.FloatingDecimal.readJavaFormatString(FloatingDecimal.java:1222)
[ ] at java.lang.Double.parseDouble(Double.java:510)
[ ] at spim.setup.Device.getPropertyDouble(Device.java:116)
[ ] at spim.setup.Cobolt.getPower(Cobolt.java:27)
[ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1255)
[ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:94)
[ ] at spim.SPIMAcquisition$18.run(SPIMAcquisition.java:1021)
[ ] at java.util.TimerThread.mainLoop(Timer.java:512)
[ ] at java.util.TimerThread.run(Timer.java:462)
2014-12-20T20:28:50.196998 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:50.397010 tid7212 [dbg,dev:COM3] GetAnswer # retries = 196
2014-12-20T20:28:50.597021 tid7212 [dbg,dev:COM3] GetAnswer # retries = 391
2014-12-20T20:28:50.697027 tid7212 [IFO,dev:COM3] TERM_TIMEOUT error occured!
2014-12-20T20:28:50.697027 tid7212 [ERR,Core] Error occurred in device COM3: Error in device COM3: Error code 107 (6b hex).
2014-12-20T20:28:50.697027 tid7212 [IFO,App] "PowerSetpoint" on Cobolt is non-numeric.
2014-12-20T20:28:50.697027 tid7212 [IFO,App] java.lang.NumberFormatException: For input string: "557312021430771840000000000000000000000000000000000000000000%.4f"
[ ] at sun.misc.FloatingDecimal.readJavaFormatString(FloatingDecimal.java:1222)
[ ] at java.lang.Double.parseDouble(Double.java:510)
[ ] at spim.setup.Device.getPropertyDouble(Device.java:116)
[ ] at spim.setup.Cobolt.getPower(Cobolt.java:27)
[ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1255)
[ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:94)
[ ] at spim.SPIMAcquisition$18.run(SPIMAcquisition.java:1021)
[ ] at java.util.TimerThread.mainLoop(Timer.java:512)
[ ] at java.util.TimerThread.run(Timer.java:462)
2014-12-20T20:28:50.709028 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:50.909039 tid7212 [dbg,dev:COM3] GetAnswer # retries = 201
2014-12-20T20:28:51.109051 tid7212 [dbg,dev:COM3] GetAnswer # retries = 401
2014-12-20T20:28:51.210056 tid7212 [IFO,dev:COM3] TERM_TIMEOUT error occured!
2014-12-20T20:28:51.210056 tid7212 [ERR,Core] Error occurred in device COM3: Error in device COM3: Error code 107 (6b hex).
2014-12-20T20:28:51.210056 tid7212 [IFO,App] "PowerSetpoint" on Cobolt is non-numeric.
2014-12-20T20:28:51.210056 tid7212 [IFO,App] java.lang.NumberFormatException: For input string: "557312021430771840000000000000000000000000000000000000000000%.4f"
[ ] at sun.misc.FloatingDecimal.readJavaFormatString(FloatingDecimal.java:1222)
[ ] at java.lang.Double.parseDouble(Double.java:510)
[ ] at spim.setup.Device.getPropertyDouble(Device.java:116)
[ ] at spim.setup.Cobolt.getPower(Cobolt.java:27)
[ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1255)
[ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:94)
[ ] at spim.SPIMAcquisition$18.run(SPIMAcquisition.java:1021)
[ ] at java.util.TimerThread.mainLoop(Timer.java:512)
[ ] at java.util.TimerThread.run(Timer.java:462)
2014-12-20T20:28:51.221057 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:51.422068 tid7212 [dbg,dev:COM3] GetAnswer # retries = 201
2014-12-20T20:28:51.622080 tid7212 [dbg,dev:COM3] GetAnswer # retries = 398
2014-12-20T20:28:51.722086 tid7212 [IFO,dev:COM3] TERM_TIMEOUT error occured!
2014-12-20T20:28:51.722086 tid7212 [ERR,Core] Error occurred in device COM3: Error in device COM3: Error code 107 (6b hex).
2014-12-20T20:28:51.722086 tid7212 [IFO,App] "PowerSetpoint" on Cobolt is non-numeric.
2014-12-20T20:28:51.722086 tid7212 [IFO,App] java.lang.NumberFormatException: For input string: "557312021430771840000000000000000000000000000000000000000000%.4f"
[ ] at sun.misc.FloatingDecimal.readJavaFormatString(FloatingDecimal.java:1222)
[ ] at java.lang.Double.parseDouble(Double.java:510)
[ ] at spim.setup.Device.getPropertyDouble(Device.java:116)
[ ] at spim.setup.Cobolt.getPower(Cobolt.java:27)
[ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1255)
[ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:94)
[ ] at spim.SPIMAcquisition$18.run(SPIMAcquisition.java:1021)
[ ] at java.util.TimerThread.mainLoop(Timer.java:512)
[ ] at java.util.TimerThread.run(Timer.java:462)
2014-12-20T20:28:51.733086 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:51.933098 tid7212 [dbg,dev:COM3] GetAnswer # retries = 200
2014-12-20T20:28:52.133109 tid7212 [dbg,dev:COM3] GetAnswer # retries = 401
2014-12-20T20:28:52.233115 tid7212 [IFO,dev:COM3] TERM_TIMEOUT error occured!
2014-12-20T20:28:52.233115 tid7212 [ERR,Core] Error occurred in device COM3: Error in device COM3: Error code 107 (6b hex).
2014-12-20T20:28:52.233115 tid7212 [IFO,App] "PowerSetpoint" on Cobolt is non-numeric.
2014-12-20T20:28:52.233115 tid7212 [IFO,App] java.lang.NumberFormatException: For input string: "557312021430771840000000000000000000000000000000000000000000%.4f"
[ ] at sun.misc.FloatingDecimal.readJavaFormatString(FloatingDecimal.java:1222)
[ ] at java.lang.Double.parseDouble(Double.java:510)
[ ] at spim.setup.Device.getPropertyDouble(Device.java:116)
[ ] at spim.setup.Cobolt.getPower(Cobolt.java:27)
[ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1255)
[ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:94)
[ ] at spim.SPIMAcquisition$18.run(SPIMAcquisition.java:1021)
[ ] at java.util.TimerThread.mainLoop(Timer.java:512)
[ ] at java.util.TimerThread.run(Timer.java:462)
2014-12-20T20:28:52.245115 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:52.445127 tid7212 [dbg,dev:COM3] GetAnswer # retries = 201
2014-12-20T20:28:52.645138 tid7212 [dbg,dev:COM3] GetAnswer # retries = 401
2014-12-20T20:28:52.745144 tid7212 [IFO,dev:COM3] TERM_TIMEOUT error occured!
2014-12-20T20:28:52.745144 tid7212 [ERR,Core] Error occurred in device COM3: Error in device COM3: Error code 107 (6b hex).
2014-12-20T20:28:52.745144 tid7212 [IFO,App] "PowerSetpoint" on Cobolt is non-numeric.
2014-12-20T20:28:52.745144 tid7212 [IFO,App] java.lang.NumberFormatException: For input string: "557312021430771840000000000000000000000000000000000000000000%.4f"
[ ] at sun.misc.FloatingDecimal.readJavaFormatString(FloatingDecimal.java:1222)
[ ] at java.lang.Double.parseDouble(Double.java:510)
[ ] at spim.setup.Device.getPropertyDouble(Device.java:116)
[ ] at spim.setup.Cobolt.getPower(Cobolt.java:27)
[ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1255)
[ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:94)
[ ] at spim.SPIMAcquisition$18.run(SPIMAcquisition.java:1021)
[ ] at java.util.TimerThread.mainLoop(Timer.java:512)
[ ] at java.util.TimerThread.run(Timer.java:462)
2014-12-20T20:28:52.757145 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:52.957156 tid7212 [dbg,dev:COM3] GetAnswer # retries = 201
2014-12-20T20:28:53.157168 tid7212 [dbg,dev:COM3] GetAnswer # retries = 398
2014-12-20T20:28:53.257173 tid7212 [IFO,dev:COM3] TERM_TIMEOUT error occured!
2014-12-20T20:28:53.257173 tid7212 [ERR,Core] Error occurred in device COM3: Error in device COM3: Error code 107 (6b hex).
2014-12-20T20:28:53.257173 tid7212 [IFO,App] "PowerSetpoint" on Cobolt is non-numeric.
2014-12-20T20:28:53.257173 tid7212 [IFO,App] java.lang.NumberFormatException: For input string: "557312021430771840000000000000000000000000000000000000000000%.4f"
[ ] at sun.misc.FloatingDecimal.readJavaFormatString(FloatingDecimal.java:1222)
[ ] at java.lang.Double.parseDouble(Double.java:510)
[ ] at spim.setup.Device.getPropertyDouble(Device.java:116)
[ ] at spim.setup.Cobolt.getPower(Cobolt.java:27)
[ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1255)
[ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:94)
[ ] at spim.SPIMAcquisition$18.run(SPIMAcquisition.java:1021)
[ ] at java.util.TimerThread.mainLoop(Timer.java:512)
[ ] at java.util.TimerThread.run(Timer.java:462)
2014-12-20T20:28:53.269174 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:53.447184 tid3852 [IFO,App] Stop called in LivemodeTimer, true
2014-12-20T20:28:53.447184 tid3852 [dbg,Core] Will stop sequence acquisition from current camera
2014-12-20T20:28:53.469186 tid7212 [dbg,dev:COM3] GetAnswer # retries = 197
2014-12-20T20:28:53.474186 tid5448 [dbg,dev:COM3] SetCommand -> l0\r
2014-12-20T20:28:53.669197 tid7212 [dbg,dev:COM3] GetAnswer # retries = 397
2014-12-20T20:28:53.674197 tid5448 [dbg,dev:COM3] GetAnswer # retries = 200
2014-12-20T20:28:53.769203 tid7212 [IFO,dev:COM3] TERM_TIMEOUT error occured!
2014-12-20T20:28:53.769203 tid7212 [ERR,Core] Error occurred in device COM3: Error in device COM3: Error code 107 (6b hex).
2014-12-20T20:28:53.769203 tid7212 [IFO,App] "PowerSetpoint" on Cobolt is non-numeric.
2014-12-20T20:28:53.769203 tid7212 [IFO,App] java.lang.NumberFormatException: For input string: "557312021430771840000000000000000000000000000000000000000000%.4f"
[ ] at sun.misc.FloatingDecimal.readJavaFormatString(FloatingDecimal.java:1222)
[ ] at java.lang.Double.parseDouble(Double.java:510)
[ ] at spim.setup.Device.getPropertyDouble(Device.java:116)
[ ] at spim.setup.Cobolt.getPower(Cobolt.java:27)
[ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1255)
[ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:94)
[ ] at spim.SPIMAcquisition$18.run(SPIMAcquisition.java:1021)
[ ] at java.util.TimerThread.mainLoop(Timer.java:512)
[ ] at java.util.TimerThread.run(Timer.java:462)
2014-12-20T20:28:53.874209 tid5448 [dbg,dev:COM3] GetAnswer # retries = 401
2014-12-20T20:28:53.974214 tid5448 [IFO,dev:COM3] TERM_TIMEOUT error occured!
2014-12-20T20:28:53.974214 tid5448 [ERR,Core] Error occurred in device COM3: Error in device COM3: Error code 107 (6b hex).
2014-12-20T20:28:53.994216 tid3852 [dbg,Core] Did stop sequence acquisition from current camera
2014-12-20T20:28:54.101222 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:54.301233 tid7212 [dbg,dev:COM3] GetAnswer # retries = 201
2014-12-20T20:28:54.501245 tid7212 [dbg,dev:COM3] GetAnswer # retries = 402
2014-12-20T20:28:54.601250 tid7212 [IFO,dev:COM3] TERM_TIMEOUT error occured!
2014-12-20T20:28:54.601250 tid7212 [ERR,Core] Error occurred in device COM3: Error in device COM3: Error code 107 (6b hex).
2014-12-20T20:28:54.601250 tid7212 [IFO,App] "PowerSetpoint" on Cobolt is non-numeric.
2014-12-20T20:28:54.601250 tid7212 [IFO,App] java.lang.NumberFormatException: For input string: "557312021430771840000000000000000000000000000000000000000000%.4f"
[ ] at sun.misc.FloatingDecimal.readJavaFormatString(FloatingDecimal.java:1222)
[ ] at java.lang.Double.parseDouble(Double.java:510)
[ ] at spim.setup.Device.getPropertyDouble(Device.java:116)
[ ] at spim.setup.Cobolt.getPower(Cobolt.java:27)
[ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1255)
[ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:94)
[ ] at spim.SPIMAcquisition$18.run(SPIMAcquisition.java:1021)
[ ] at java.util.TimerThread.mainLoop(Timer.java:512)
[ ] at java.util.TimerThread.run(Timer.java:462)
2014-12-20T20:28:54.613251 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:54.813262 tid7212 [dbg,dev:COM3] GetAnswer # retries = 201
2014-12-20T20:28:55.013274 tid7212 [dbg,dev:COM3] GetAnswer # retries = 402
2014-12-20T20:28:55.113280 tid7212 [IFO,dev:COM3] TERM_TIMEOUT error occured!
2014-12-20T20:28:55.113280 tid7212 [ERR,Core] Error occurred in device COM3: Error in device COM3: Error code 107 (6b hex).
2014-12-20T20:28:55.113280 tid7212 [IFO,App] "PowerSetpoint" on Cobolt is non-numeric.
2014-12-20T20:28:55.113280 tid7212 [IFO,App] java.lang.NumberFormatException: For input string: "557312021430771840000000000000000000000000000000000000000000%.4f"
[ ] at sun.misc.FloatingDecimal.readJavaFormatString(FloatingDecimal.java:1222)
[ ] at java.lang.Double.parseDouble(Double.java:510)
[ ] at spim.setup.Device.getPropertyDouble(Device.java:116)
[ ] at spim.setup.Cobolt.getPower(Cobolt.java:27)
[ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1255)
[ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:94)
[ ] at spim.SPIMAcquisition$18.run(SPIMAcquisition.java:1021)
[ ] at java.util.TimerThread.mainLoop(Timer.java:512)
[ ] at java.util.TimerThread.run(Timer.java:462)
2014-12-20T20:28:55.125280 tid7212 [dbg,dev:COM3] SetCommand -> p? \r
2014-12-20T20:28:55.275289 tid5872 [IFO,App] Stop called in LivemodeTimer, true
2014-12-20T20:28:55.325292 tid7212 [dbg,dev:COM3] GetAnswer # retries = 201
2014-12-20T20:28:55.356293 tid5872 [dbg,Core] Waiting for device COM3...
2014-12-20T20:28:55.356293 tid5872 [dbg,Core] Finished waiting for device COM3
2014-12-20T20:28:55.356293 tid5872 [dbg,Core] Waiting for device Cobolt...
2014-12-20T20:28:55.525303 tid7212 [dbg,dev:COM3] GetAnswer # retries = 402
2014-12-20T20:28:55.625309 tid7212 [IFO,dev:COM3] TERM_TIMEOUT error occured!
2014-12-20T20:28:55.625309 tid7212 [ERR,Core] Error occurred in device COM3: Error in device COM3: Error code 107 (6b hex).
2014-12-20T20:28:55.625309 tid5872 [dbg,Core] Finished waiting for device Cobolt
2014-12-20T20:28:55.625309 tid5872 [dbg,Core] Waiting for device OrcaFlash...
2014-12-20T20:28:55.625309 tid5872 [dbg,Core] Finished waiting for device OrcaFlash
2014-12-20T20:28:55.625309 tid5872 [dbg,Core] Waiting for device Picard Twister...
2014-12-20T20:28:55.625309 tid5872 [dbg,Core] Finished waiting for device Picard Twister
2014-12-20T20:28:55.625309 tid5872 [dbg,Core] Waiting for device Picard Z Stage...
2014-12-20T20:28:55.625309 tid5872 [dbg,Core] Finished waiting for device Picard Z Stage
2014-12-20T20:28:55.625309 tid5872 [dbg,Core] Waiting for device Picard XY Stage...
2014-12-20T20:28:55.625309 tid5872 [dbg,Core] Finished waiting for device Picard XY Stage
2014-12-20T20:28:55.625309 tid5872 [dbg,Core] Will unload all devices
2014-12-20T20:28:55.726315 tid5872 [dbg,dev:COM3] SetCommand -> l0\r
2014-12-20T20:28:55.926326 tid5872 [dbg,dev:COM3] GetAnswer # retries = 201
2014-12-20T20:28:56.126337 tid5872 [dbg,dev:COM3] GetAnswer # retries = 402
2014-12-20T20:28:56.226343 tid5872 [IFO,dev:COM3] TERM_TIMEOUT error occured!
2014-12-20T20:28:56.226343 tid5872 [ERR,Core] Error occurred in device COM3: Error in device COM3: Error code 107 (6b hex).
2014-12-20T20:28:56.426355 tid5872 [IFO,Core] Did unload all devices
2014-12-20T20:28:56.426355 tid5872 [IFO,Core] System reset
2014-12-20T20:28:56.428355 tid5872 [IFO,Core] Core session ended
-------------- next part --------------
Thanks in advance,
Cristian
More information about the OpenSPIM
mailing list