[OpenSPIM] SPIMAcquisition plugin installation fails

[Carsten Wolff]

Hi Johannes,

thank you very much for your detailed informations. I did as you 
suggested and I start with no additional dependancies.

First I got a lot of infomration including this exception:

  [IFO,App] java.lang.NoClassDefFoundError: 
net/imglib2/algorithm/MultiThreaded

I copied the 'imglib2-algorithm-0.1.1' jar file into the mmplugins 
folder. From the name it was the closest.

Then I got this exception:

  [IFO,App] java.lang.NoClassDefFoundError: net/imglib2/Interval

I copied the 'imglib2-2.2.0' jar file into the mmplugins folder.


Then I got this exception:

[IFO,App] java.lang.NoClassDefFoundError: net/imglib2/labeling/Labeling

Now I don't know what to do furhter. I was looking up for 
'imglib2/labeling' and it seems that this is part of the imglib2 that I 
copied already. So something is not proper with my dependancies from 
FIJI? I slightly start to understand more and more (probably the very 
tip of the iceberg) but again I need help.

thanks in advance
Carsten


Am 17.02.2015 17:50, schrieb Johannes Schindelin:
> Hi Carsten,
> 
> On 2015-02-17 16:52, Carsten Wolff wrote:
> 
>> I didn't know that I explicitly need the 'Micro-Manager-dev' site for
>> updating FIJI. Instead I chose 'OpenSPIM' which is pre-list on the
>> update site.
> 
> This update site contains an outdated version of Micro-Manager, not
> the latest. Since you want to develop the SPIMAcquisition plugin
> (which was updated to work with the newest Micro-Manager), you need to
> switch off the OpenSPIM update site for the moment.
> 
>> So I updated FIJI via Micro-Manager-dev site and 'Acquire SPIM image'
>> appeared in the Plugins menu of Micro-Manager. But by clicking on it
>> no window opens. Strangely I can control the 4d stage via the mouse in
>> the live window which means that at least that feature from
>> SPIMAcquisition works, right? Any ideas or suggestions?
> 
> I strongly suspect the command-line output to shed more light into the
> issue. As I said, I cannot run the SPIMAcquisition plugin on my
> computer, therefore I could not test what *other* dependencies (apart
> from the imglib2-* ones) need to be copied.
> 
> Ciao,
> Johannes

-- 
Dr. Carsten Wolff
Humboldt University Berlin
Department of Biology / Comparative Zoology
Philippstr. 13
10115 Berlin
Germany
Phone: + 49 (0) 30 2093-6284
Fax: +49 (0) 30 2093-6002