[OpenSPIM] SPIMAcquisition plugin installation fails

[Carsten Wolff]

Hi everybody,

I have a problem installing the SPIM acquisition plugin as decribed in 
'https://github.com/openspim/SPIMAcquisition' and I need help to 
interpret the error messages. I am not experienced and just started with 
doing such things like building plugins from a local repository. So far 
not really successful...

As described on github I used Maven for a local repository. The error 
comes with the last builing command '|mvn -Dscijava.enforce.skip'; not 
immediately but just after 8 minutes.

here the error message:

2 errors
18 warnings
[INFO] 
------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] 
------------------------------------------------------------------------
[INFO] Total time: 08:18 min
[INFO] Finished at: 2015-02-09T16:01:04+01:00
[INFO] Final Memory: 34M/252M
[INFO] 
------------------------------------------------------------------------
[ERROR] Failed to execute goal 
org.apache.maven.plugins:maven-javadoc-plugin:2.9
.1:jar (attach-javadocs) on project SPIMAcquisition: 
MavenReportException: Error
  while creating archive:
[ERROR] Exit code: 1 - javadoc: warning - Error fetching URL: 
http://jenkins.ima
gej.net/view/Fiji/job/Saalfeld-MPICBG-Maven/javadoc/
[ERROR] C:\Program 
Files\Micro-Manager-1.4.1.9_nightlybuild\plugins\Micro-Manage
r\src\main\java\spim\FitDisk.java:142: warning: no description for @return
[ERROR] * @return
[ERROR] ^
[ERROR] C:\Program 
Files\Micro-Manager-1.4.1.9_nightlybuild\plugins\Micro-Manage
r\src\main\java\spim\FitHypersphere.java:20: error: reference not found
[ERROR] * The principle is described in {@link fiji.util.Circle_Fitter}.
[ERROR] ^
[ERROR] C:\Program 
Files\Micro-Manager-1.4.1.9_nightlybuild\plugins\Micro-Manage
r\src\main\java\spim\SPIMAcquisition.java:235: warning: no @param for hook
[ERROR] public void hookLiveControls(boolean hook) {
[ERROR] ^
[ERROR] C:\Program 
Files\Micro-Manager-1.4.1.9_nightlybuild\plugins\Micro-Manage
r\src\main\java\spim\SPIMAcquisition.java:1375: warning: no @param for args
[ERROR] public static void main(String[] args) {
[ERROR] ^
[ERROR] C:\Program 
Files\Micro-Manager-1.4.1.9_nightlybuild\plugins\Micro-Manage
r\src\main\java\spim\progacq\AcqOutputHandler.java:13: warning: no 
description f
or @throws
[ERROR] * @throws Exception
[ERROR] ^
[ERROR] C:\Program 
Files\Micro-Manager-1.4.1.9_nightlybuild\plugins\Micro-Manage
r\src\main\java\spim\progacq\AcqOutputHandler.java:21: warning: no 
description f
or @throws
[ERROR] * @throws Exception
[ERROR] ^
[ERROR] C:\Program 
Files\Micro-Manager-1.4.1.9_nightlybuild\plugins\Micro-Manage
r\src\main\java\spim\progacq\AcqOutputHandler.java:35: warning: no 
description f
or @throws
[ERROR] * @throws Exception
[ERROR] ^
[ERROR] C:\Program 
Files\Micro-Manager-1.4.1.9_nightlybuild\plugins\Micro-Manage
r\src\main\java\spim\progacq\AcqOutputHandler.java:43: warning: no 
description f
or @throws
[ERROR] * @throws Exception
[ERROR] ^
[ERROR] C:\Program 
Files\Micro-Manager-1.4.1.9_nightlybuild\plugins\Micro-Manage
r\src\main\java\spim\progacq\AcqOutputHandler.java:53: warning: no 
description f
or @throws
[ERROR] * @throws Exception
[ERROR] ^
[ERROR] C:\Program 
Files\Micro-Manager-1.4.1.9_nightlybuild\plugins\Micro-Manage
r\src\main\java\spim\progacq\IndividualImagesHandler.java:18: error: 
@param name
  not found
[ERROR] * @param t      whether or not to include time in filename
[ERROR] ^
[ERROR] C:\Program 
Files\Micro-Manager-1.4.1.9_nightlybuild\plugins\Micro-Manage
r\src\main\java\spim\progacq\IndividualImagesHandler.java:22: warning: 
no @param
  for xyztt
[ERROR] public static String shortNamesToScheme(String header, boolean 
xyztt[],
String[] nameMap) {
[ERROR] ^
[ERROR] C:\Program 
Files\Micro-Manager-1.4.1.9_nightlybuild\plugins\Micro-Manage
r\src\main\java\spim\progacq\ProgrammaticAcquisitor.java:139: warning: 
no @param
  for corei
[ERROR] public static List<String[]> generateRowsFromRanges(CMMCore corei,
[ERROR] ^
[ERROR] C:\Program 
Files\Micro-Manager-1.4.1.9_nightlybuild\plugins\Micro-Manage
r\src\main\java\spim\progacq\ProgrammaticAcquisitor.java:258: warning: 
no descri
ption for @param
[ERROR] * @param params
[ERROR] ^
[ERROR] C:\Program 
Files\Micro-Manager-1.4.1.9_nightlybuild\plugins\Micro-Manage
r\src\main\java\spim\progacq\ProgrammaticAcquisitor.java:259: warning: 
no descri
ption for @return
[ERROR] * @return
[ERROR] ^
[ERROR] C:\Program 
Files\Micro-Manager-1.4.1.9_nightlybuild\plugins\Micro-Manage
r\src\main\java\spim\progacq\ProgrammaticAcquisitor.java:260: warning: 
no descri
ption for @throws
[ERROR] * @throws Exception
[ERROR] ^
[ERROR] C:\Program 
Files\Micro-Manager-1.4.1.9_nightlybuild\plugins\Micro-Manage
r\src\main\java\spim\setup\Device.java:54: warning: no @param for property
[ERROR] public boolean hasProperty(String property) {
[ERROR] ^
[ERROR] C:\Program 
Files\Micro-Manager-1.4.1.9_nightlybuild\plugins\Micro-Manage
r\src\main\java\spim\setup\Device.java:54: warning: no @return
[ERROR] public boolean hasProperty(String property) {
[ERROR] ^
[ERROR] C:\Program 
Files\Micro-Manager-1.4.1.9_nightlybuild\plugins\Micro-Manage
r\src\main\java\spim\setup\Laser.java:30: warning: no description for 
@throws
[ERROR] * @throws Exception
[ERROR] ^
[ERROR] C:\Program 
Files\Micro-Manager-1.4.1.9_nightlybuild\plugins\Micro-Manage
r\src\main\java\spim\setup\Laser.java:39: warning: no description for 
@throws
[ERROR] * @throws Exception
[ERROR] ^
[ERROR]
[ERROR] Command line was: "C:\Program 
Files\Java\jdk1.8.0_31\jre\..\bin\javadoc.
exe" -J-Xmx1024m @options @packages
[ERROR]
[ERROR] Refer to the generated Javadoc files in 'C:\Program 
Files\Micro-Manager-
1.4.1.9_nightlybuild\plugins\Micro-Manager\target\apidocs' dir.
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the 
-e swit
ch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, 
please rea
d the following articles:
[ERROR] [Help 1] 
http://cwiki.apache.org/confluence/display/MAVEN/MojoExecutionE
xception
C:\Program Files\Micro-Manager-1.4.1.9_nightlybuild\plugins\Micro-Manager>


Any help or suggestion is highly appreciated.

Best
Carsten
|
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