[OpenSPIM] Acquisition Error (setBigTIff)

[Monika Pawłowska]

Hi,

I'm not sure if there is a way to get around it. I also had a similar  
error. That is, one way is to use the Multidimensional acquisition of  
Micro-manager itself, although then you can't use rotation.

BTW, my Micro-manager doesn't save files larger than 4GB as well, instead  
it splits the stack in one with 3.99 GB size and another one with the  
rest. So the long-term solution is to change the code of the plugin to  
either do the same - slipt the file - or by adding the  "setBigTiff(true)"  
line (if it really works).

Greetings,
Monika

W dniu .07.2015 o 01:37 Gabriel Davis Jones <gabriel.jones at florey.edu.au>  
pisze:

>
> Hi All,
>
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> I'm constantly receiving this error when I try and acquire an image >4GB:
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> java.lang.RuntimeException: loci.formats.FormatException: File is too  
> large; call setBigTiff(true)
>
>
> at spim.progacq.AsyncOutputWrapper$2.run(AsyncOutputWrapper.java:113)
>
>
> at java.lang.Thread.run(Thread.java:745)
>
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> Caused by: loci.formats.FormatException: File is too large; call  
> setBigTiff(true)
>
>
> at loci.formats.out.TiffWriter.prepareToWriteImage(TiffWriter.java:343)
>
>
> at loci.formats.out.TiffWriter.saveBytes(TiffWriter.java:221)
>
>
> at loci.formats.out.OMETiffWriter.saveBytes(OMETiffWriter.java:190)
>
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> at loci.formats.out.OMETiffWriter.saveBytes(OMETiffWriter.java:180)
>
>
> at loci.formats.FormatWriter.saveBytes(FormatWriter.java:124)
>
>
> at spim.progacq.OMETIFFHandler.processSlice(OMETIFFHandler.java:175)
>
>
> at  
> spim.progacq.AsyncOutputWrapper.handleNext(AsyncOutputWrapper.java:232)
>
>
> at spim.progacq.AsyncOutputWrapper.access$300(AsyncOutputWrapper.java:18)
>
>
> at spim.progacq.AsyncOutputWrapper$2.run(AsyncOutputWrapper.java:98)
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> Any ideas how I may get around it, or are we restricted to image sizes  
> <4GB for now?
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> Kind regards,
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>>
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> Gabriel Davis Jones
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-- 
Monika Pawłowska
Nencki Institute
Laboratory of Neurobiology
3, Pasteur Street
02-093 Warsaw, Poland
phone: (+48) 22 5892 382