[OpenSPIM] open SPIM acquisition error

Aurelia Honerkamp-Smith aureliaomega at gmail.com
Fri Apr 17 09:56:00 CDT 2015 

I can acquire a stack and save it to disk, but whenever I try to start
acquisition with an output directory specified, I get the error.

I installed the new 64 bit version, and all works fine except I get a
similar error:

java.lang.NoSuchMethodError:
loci.formats.meta.IMetadata.setPixelsPhysicalSizeX(Lome/xml/model/primitives/PositiveFloat;I)V
    at spim.progacq.OMETIFFHandler.<init>(OMETIFFHandler.java:95)
    at spim.SPIMAcquisition.actionPerformed(SPIMAcquisition.java:1760)
    at javax.swing.AbstractButton.fireActionPerformed(Unknown Source)
    at javax.swing.AbstractButton$Handler.actionPerformed(Unknown Source)
    at javax.swing.DefaultButtonModel.fireActionPerformed(Unknown Source)
    at javax.swing.DefaultButtonModel.setPressed(Unknown Source)
    at javax.swing.plaf.basic.BasicButtonListener.mouseReleased(Unknown
Source)
    at java.awt.Component.processMouseEvent(Unknown Source)
    at javax.swing.JComponent.processMouseEvent(Unknown Source)
    at java.awt.Component.processEvent(Unknown Source)
    at java.awt.Container.processEvent(Unknown Source)
    at java.awt.Component.dispatchEventImpl(Unknown Source)
    at java.awt.Container.dispatchEventImpl(Unknown Source)
    at java.awt.Component.dispatchEvent(Unknown Source)
    at java.awt.LightweightDispatcher.retargetMouseEvent(Unknown Source)
    at java.awt.LightweightDispatcher.processMouseEvent(Unknown Source)
    at java.awt.LightweightDispatcher.dispatchEvent(Unknown Source)
    at java.awt.Container.dispatchEventImpl(Unknown Source)
    at java.awt.Window.dispatchEventImpl(Unknown Source)
    at java.awt.Component.dispatchEvent(Unknown Source)
    at java.awt.EventQueue.dispatchEventImpl(Unknown Source)
    at java.awt.EventQueue.access$000(Unknown Source)
    at java.awt.EventQueue$1.run(Unknown Source)
    at java.awt.EventQueue$1.run(Unknown Source)
    at java.security.AccessController.doPrivileged(Native Method)
    at java.security.AccessControlContext$1.doIntersectionPrivilege(Unknown
Source)
    at java.security.AccessControlContext$1.doIntersectionPrivilege(Unknown
Source)
    at java.awt.EventQueue$2.run(Unknown Source)
    at java.awt.EventQueue$2.run(Unknown Source)
    at java.security.AccessController.doPrivileged(Native Method)
    at java.security.AccessControlContext$1.doIntersectionPrivilege(Unknown
Source)
    at java.awt.EventQueue.dispatchEvent(Unknown Source)
    at java.awt.EventDispatchThread.pumpOneEventForFilters(Unknown Source)
    at java.awt.EventDispatchThread.pumpEventsForFilter(Unknown Source)
    at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown Source)
    at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
    at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
    at java.awt.EventDispatchThread.run(Unknown Source)

Cheers


On Fri, Apr 17, 2015 at 12:42 PM, Aurelia Honerkamp-Smith <
aureliaomega at gmail.com> wrote:

> Hello,
> I have a new error this morning.  When I try to start multi-angle
> acquisition, I get the following Java console error:
>
> [WARNING] Couldd not load legacy launcher config file
> C:\Users\ah659\Desktop\OPENSP~1\OpenSPIM.app\ImageJ.cfg
> MMCoreJ.jar path =
> C:\Users\ah659\Desktop\OPENSP~1\OpenSPIM.app\plugins\MMCoreJ.jar
> C:\Users\ah659\Desktop\OPENSP~1\OpenSPIM.app\plugins
> C:\Users\ah659\Desktop\OPENSP~1\OpenSPIM.app
> C:\Users\ah659\Desktop\OPENSP~1\OpenSPIM.app\mm\win32
> C:\Users\ah659\Desktop\OPENSP~1
> C:\Users\ah659\Desktop\OPENSP~1\mm\win32
> java.lang.NoSuchMethodError:
> loci.formats.meta.IMetadata.setPixelsPhysicalSizeX(Lome/xml/model/primitives/PositiveFloat;I)V
>     at spim.progacq.OMETIFFHandler.<init>(OMETIFFHandler.java:95)
>     at spim.SPIMAcquisition.actionPerformed(SPIMAcquisition.java:1731)
>     at
> javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:1995)
>     at
> javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2318)
>     at
> javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:387)
>     at
> javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:242)
>     at
> javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:236)
>     at java.awt.Component.processMouseEvent(Component.java:6289)
>     at javax.swing.JComponent.processMouseEvent(JComponent.java:3267)
>     at java.awt.Component.processEvent(Component.java:6054)
>     at java.awt.Container.processEvent(Container.java:2041)
>     at java.awt.Component.dispatchEventImpl(Component.java:4652)
>     at java.awt.Container.dispatchEventImpl(Container.java:2099)
>     at java.awt.Component.dispatchEvent(Component.java:4482)
>     at
> java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4577)
>     at
> java.awt.LightweightDispatcher.processMouseEvent(Container.java:4238)
>     at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4168)
>     at java.awt.Container.dispatchEventImpl(Container.java:2085)
>     at java.awt.Window.dispatchEventImpl(Window.java:2478)
>     at java.awt.Component.dispatchEvent(Component.java:4482)
>     at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:644)
>     at java.awt.EventQueue.access$000(EventQueue.java:85)
>     at java.awt.EventQueue$1.run(EventQueue.java:603)
>     at java.awt.EventQueue$1.run(EventQueue.java:601)
>     at java.security.AccessController.doPrivileged(Native Method)
>     at
> java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
>     at
> java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
>     at java.awt.EventQueue$2.run(EventQueue.java:617)
>     at java.awt.EventQueue$2.run(EventQueue.java:615)
>     at java.security.AccessController.doPrivileged(Native Method)
>     at
> java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
>     at java.awt.EventQueue.dispatchEvent(EventQueue.java:614)
>     at
> java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269)
>     at
> java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184)
>     at
> java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174)
>     at
> java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169)
>     at
> java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161)
>     at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
>
> Live view works, but Snap does not complete.
> Anyone have an idea?
> Thanks,
> Aurelia
>
>
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