[OpenSPIM] z-motor communication problem
Michael Redd
Michael.Redd at hci.utah.edu
Mon Oct 6 17:59:04 CDT 2014
I have been struggling with fiji failing to communicate with my Picard Z-motor. ImageJ and micromanager can drive the stage just fine. I managed to get fiji to communicate with my Picard Z motor by replacing the openspim fiji mm Picard stage driver with the Picard driver from micromanager 1.4 in a windows 7 machine. (This does not work with windows xp 32.) Unfortunately I now get another error: "Line 8: Device COM1, Serial Manager, COM1 The specified label "COM1" is already in use". Can anyone help me? Here is a core log
2014-10-06T15:43:27.161040 tid2364 [IFO,LogManager] Enabled primary log file C:\Users\SPIM-7\Desktop\OpenSPIM-20140207\OpenSPIM.app\CoreLogs\CoreLog20141006T154327_pid1088.txt
2014-10-06T15:43:27.161040 tid2364 [IFO,App] User: SPIM-7
2014-10-06T15:43:27.161040 tid2364 [IFO,App] Host: SPIM-7-PC
2014-10-06T15:43:27.161040 tid2364 [IFO,App] MM Studio version: 1.4.x dev
2014-10-06T15:43:27.161040 tid2364 [IFO,App] MMCore version 4.0.4
2014-10-06T15:43:27.161040 tid2364 [IFO,App] Device API version 60, Module API version 10
2014-10-06T15:43:27.161040 tid2364 [IFO,App] Operating System: Windows 7 (x86) 6.1
2014-10-06T15:43:27.161040 tid2364 [IFO,App] JVM: Java HotSpot(TM) Client VM, version 1.7.0_67, 32-bit
2014-10-06T15:43:27.410640 tid2072 [IFO,App] Attempting to install plugin spim.SPIMAcquisition
2014-10-06T15:43:27.426240 tid2072 [IFO,App] Attempting to install autofocus plugin Autofocus
2014-10-06T15:43:27.426240 tid2072 [IFO,App] Attempting to install autofocus plugin AutofocusDuo
2014-10-06T15:43:27.426240 tid2072 [IFO,App] Attempting to install autofocus plugin AutofocusTB
2014-10-06T15:43:27.426240 tid2072 [IFO,App] Attempting to install autofocus plugin OughtaFocus
2014-10-06T15:43:29.859844 tid2364 [IFO,Core] Did unload all devices
2014-10-06T15:43:29.859844 tid2364 [IFO,Core] Did load device COM1 from SerialManager; label = COM1
2014-10-06T15:43:29.859844 tid2364 [ERR,Core] Error occurred in device MMCore::loadDevice: The specified label "COM1" is already in use
2014-10-06T15:43:29.859844 tid2364 [IFO,Core] Did load device HamamatsuHam_DCAM from HamamatsuHam; label = HamamatsuHam_DCAM
2014-10-06T15:43:29.859844 tid2364 [IFO,Core] Did load device VLTStradus from Stradus; label = VLTStradus
2014-10-06T15:43:29.859844 tid2364 [IFO,Core] Did load device Picard Twister from PicardStage; label = Picard Twister
2014-10-06T15:43:29.859844 tid2364 [IFO,Core] Did load device Picard Z Stage from PicardStage; label = Picard Z Stage
2014-10-06T15:43:29.859844 tid2364 [IFO,Core] Did load device Picard XY Stage from PicardStage; label = Picard XY Stage
2014-10-06T15:43:29.984645 tid2364 [IFO,Core] Will initialize 6 devices
2014-10-06T15:43:29.984645 tid2364 [IFO,Core] Will initialize device COM1
2014-10-06T15:43:29.984645 tid2364 [IFO,Core] Did initialize device COM1
2014-10-06T15:43:29.984645 tid2364 [IFO,Core] Will initialize device HamamatsuHam_DCAM
2014-10-06T15:43:31.396924 tid2364 [IFO,Core] Did initialize device HamamatsuHam_DCAM
2014-10-06T15:43:31.396924 tid2364 [IFO,Core] Default camera set to HamamatsuHam_DCAM
2014-10-06T15:43:31.396924 tid2364 [IFO,Core] Will initialize device VLTStradus
2014-10-06T15:43:32.146967 tid2364 [IFO,Core] Did initialize device VLTStradus
2014-10-06T15:43:32.146967 tid2364 [IFO,Core] Default shutter set to VLTStradus
2014-10-06T15:43:32.146967 tid2364 [IFO,Core] Will initialize device Picard Twister
2014-10-06T15:43:32.168968 tid2364 [IFO,Core] Did initialize device Picard Twister
2014-10-06T15:43:32.168968 tid2364 [IFO,Core] Will initialize device Picard Z Stage
2014-10-06T15:43:32.172968 tid2364 [IFO,Core] Did initialize device Picard Z Stage
2014-10-06T15:43:32.172968 tid2364 [IFO,Core] Will initialize device Picard XY Stage
2014-10-06T15:43:32.224971 tid2364 [IFO,Core] Did initialize device Picard XY Stage
2014-10-06T15:43:32.224971 tid2364 [IFO,Core] Default xy stage set to Picard XY Stage
2014-10-06T15:43:32.224971 tid2364 [IFO,Core] Finished initializing 6 devices
2014-10-06T15:43:32.224971 tid2364 [IFO,Core] Default camera set to HamamatsuHam_DCAM
2014-10-06T15:43:32.226971 tid2364 [IFO,App]
[ ] java.lang.Exception: Line 8: Device,COM1,SerialManager,COM1
[ ] The specified label "COM1" is already in use
[ ]
[ ] in Thread[AWT-EventQueue-0,6,main]
[ ] at mmcorej.MMCoreJJNI.CMMCore_loadSystemConfiguration(Native Method)
[ ] at mmcorej.CMMCore.loadSystemConfiguration(CMMCore.java:313)
[ ] at org.micromanager.MMStudioMainFrame.loadSystemConfiguration(MMStudioMainFrame.java:3151)
[ ] at org.micromanager.MMStudioMainFrame.access$2200(MMStudioMainFrame.java:157)
[ ] at org.micromanager.MMStudioMainFrame$1.windowOpened(MMStudioMainFrame.java:560)
[ ] at java.awt.AWTEventMulticaster.windowOpened(Unknown Source)
[ ] at java.awt.Window.processWindowEvent(Unknown Source)
[ ] at javax.swing.JFrame.processWindowEvent(Unknown Source)
[ ] at java.awt.Window.processEvent(Unknown Source)
[ ] at java.awt.Component.dispatchEventImpl(Unknown Source)
[ ] at java.awt.Container.dispatchEventImpl(Unknown Source)
[ ] at java.awt.Window.dispatchEventImpl(Unknown Source)
[ ] at java.awt.Component.dispatchEvent(Unknown Source)
[ ] at java.awt.EventQueue.dispatchEventImpl(Unknown Source)
[ ] at java.awt.EventQueue.access$200(Unknown Source)
[ ] at java.awt.EventQueue$3.run(Unknown Source)
[ ] at java.awt.EventQueue$3.run(Unknown Source)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.ProtectionDomain$1.doIntersectionPrivilege(Unknown Source)
[ ] at java.security.ProtectionDomain$1.doIntersectionPrivilege(Unknown Source)
[ ] at java.awt.EventQueue$4.run(Unknown Source)
[ ] at java.awt.EventQueue$4.run(Unknown Source)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.ProtectionDomain$1.doIntersectionPrivilege(Unknown Source)
[ ] at java.awt.EventQueue.dispatchEvent(Unknown Source)
[ ] at java.awt.EventDispatchThread.pumpOneEventForFilters(Unknown Source)
[ ] at java.awt.EventDispatchThread.pumpEventsForFilter(Unknown Source)
[ ] at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown Source)
[ ] at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
[ ] at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
[ ] at java.awt.EventDispatchThread.run(Unknown Source)
2014-10-06T15:43:41.510502 tid2364 [IFO,Core] Did update system state cache
2014-10-06T15:43:41.544504 tid2364 [IFO,App] Startup script file (C:\Users\SPIM-7\Desktop\OpenSPIM-20140207\OpenSPIM.app\MMStartup.bsh) not present.
2014-10-06T15:43:47.106210 tid2364 [IFO,Core] Did unload all devices
2014-10-06T15:43:47.106210 tid2364 [IFO,Core] System reset
2014-10-06T15:43:47.106210 tid2364 [IFO,Core] Core session ended
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