[OpenSPIM] OpenSPIM Digest, Vol 14, Issue 20
Aurelia Honerkamp-Smith
aureliaomega at gmail.com
Mon Jun 30 12:55:14 CDT 2014
Hi!,
With the SerialManager dll from June 24, I get the same error messages but
entire system doesn't crash, it seems to be an improvement! New core log
is attached again.
Thanks again!
Aurelia
On Mon, Jun 30, 2014 at 6:01 PM, Luke Stuyvenberg <stuyvenberg at wisc.edu>
wrote:
> Hi Aurelia,
>
> On 06/30/14, Aurelia Honerkamp-Smith wrote:
> > Thank you! I am still having a problem, probably because I'm using a
> nonstandard setup. There seems to be a conflict in loading my camera (a
> PVCam one) and the shutter I use to block the laser (Thorlabs SC10); when I
> try to configure, I get a message "the specified label COM3 is already in
> use" before anything has been configured, and then several times after I
> load both, one that says "Line8: device, COM3, serialmanager, COM3." The
> shutter should be on COM3 but not the camera, and I don't run into this
> conflict when I load both shutter and camera in the vanilla MM from 24
> June. I attach a core log showing an attempt to load shutter and camera.
>
>
>
> Do the devices work individually in OpenSPIM? i.e. if only one is loaded,
> do you ever get that message? It sounds like a problem with the
> SerialManager, a device adapter which I hadn't updated -- you might try
> pulling mmgr_dal_SerialManager.dll from the 24 June nightly build. I'll
> also be looking into this.
>
>
> On 06/30/14, Aurelia Honerkamp-Smith wrote:
> > The Picard stage now appears in the list of available hardware, but when
> I try to load all three the computer bluescreens.
>
>
> Load all three devices (camera, shutter, stage), or load all three stages?
> Does it bluescreen reliably? (I've not seen/heard of this happening
> before...)
>
>
> I'll let you know what I work out. Thanks again!
> Luke
>
>
> On 06/30/14, Aurelia Honerkamp-Smith wrote:
> > Hi Luke,
> >
> >
> > Thank you! I am still having a problem, probably because I'm using a
> nonstandard setup. There seems to be a conflict in loading my camera (a
> PVCam one) and the shutter I use to block the laser (Thorlabs SC10); when I
> try to configure, I get a message "the specified label COM3 is already in
> use" before anything has been configured, and then several times after I
> load both, one that says "Line8: device, COM3, serialmanager, COM3." The
> shutter should be on COM3 but not the camera, and I don't run into this
> conflict when I load both shutter and camera in the vanilla MM from 24
> June. I attach a core log showing an attempt to load shutter and camera.
> The Picard stage now appears in the list of available hardware, but when I
> try to load all three the computer bluescreens.
> >
> >
> > Thanks again,
> > Aurelia
> >
> >
> >
> > On Mon, Jun 30, 2014 at 3:03 PM, Luke Stuyvenberg <openspim at openspim.org
> <stuyvenberg at wisc.edu')" target="1">stuyvenberg at wisc.edu> wrote:
> >
> > > Hi Aurelia,
> > >
> > > Sorry about that; it seems a lot more had changed than I had expected.
> I've updated the update site again, with a number of changes (new
> MMCore, new versions of the device adapters). It tested okay on my virtual
> machine, but if there's still a problem, please let me know. If you run
> into other device adapter problems (i.e. not with PicardStage), try getting
> updated device adapter versions from the nightly build as of 24 June or so.
> > >
> > >
> > > Thanks!
> > > Luke
> > >
> > > On 06/29/14, Aurelia Honerkamp-Smith wrote:
> > > > Hello,
> > > >
> > > > I am afraid that after updating to the newest PicardStage dll, my
> previous configuration is unable to load the stage. I get an error message:
> > > >
> > > > Line 8: Device,Picard Twister,PicardStage,Picard Twister
> > > > Failed to load device adapter "PicardStage" from
> "C:\Users\ah659\Desktop\OPENSP~1\OpenSPIM.app\mm\win32\mmgr_dal_PicardStage.dll"
> > > >
> > > > Line 9: Device,Picard Z Stage,PicardStage,Picard Z Stage
> > > > Failed to load device adapter "PicardStage" from
> "C:\Users\ah659\Desktop\OPENSP~1\OpenSPIM.app\mm\win32\mmgr_dal_PicardStage.dll"
> > > >
> > > > Line 10: Device,Picard XY Stage,PicardStage,Picard XY Stage
> > > > Failed to load device adapter "PicardStage" from
> "C:\Users\ah659\Desktop\OPENSP~1\OpenSPIM.app\mm\win32\mmgr_dal_PicardStage.dll"
> > > >
> > > > Line 22: Property,Picard Twister,Serial Number,60
> > > > No device with label "Picard Twister"
> > > >
> > > > Line 23: Property,Picard Z Stage,Serial Number,181
> > > > No device with label "Picard Z Stage"
> > > >
> > > > Line 24: Property,Picard XY Stage,Serial Number (X),182
> > > > No device with label "Picard XY Stage"
> > > >
> > > > Line 25: Property,Picard XY Stage,Serial Number (Y),180
> > > > No device with label "Picard XY Stage"
> > > >
> > > > Line 26: Property,Picard XY Stage,X-Max,8000
> > > > No device with label "Picard XY Stage"
> > > >
> > > > Line 27: Property,Picard XY Stage,X-Min,1
> > > > No device with label "Picard XY Stage"
> > > >
> > > > Line 28: Property,Picard XY Stage,Y-Max,8000
> > > > No device with label "Picard XY Stage"
> > > >
> > > > Line 29: Property,Picard XY Stage,Y-Min,1
> > > > No device with label "Picard XY Stage"
> > > >
> > > > Line 44: Property,Core,Focus,Picard Z Stage
> > > > Cannot set Core property Focus to invalid value "Picard Z Stage"
> > > >
> > > >
> > >
> > >
> > > > I can still load the camera and my shutter. The Picard Stage now
> appears unavailable in the hardware configuration wizard. I am also using
> 32-bit Fiji on a 64-bit machine, but haven't had trouble loading the
> stage before (it appeared to work normally, with the exception of the
> occasional communication delay that I mentioned earlier). I attach a core
> log.
> > > >
> > > >
> > > >
> > > >
> > > >
> > > > On Sat, Jun 28, 2014 at 6:00 PM, <
> http://openspim.org/mailman/listinfo/openspim(java_script:main.compose('new(javascript:main.compose('new',
> 't=openspim at openspim.org> <openspim-request at openspim.org <
> openspim-request at openspim.org>')" target="1">
> openspim-request at openspim.org <openspim-request at openspim.org>> wrote:
> > > >
> > > > > Send OpenSPIM mailing list submissions to
> > >
> > > > > > >
> > > > > To subscribe or unsubscribe via the World Wide Web, visit
> > >
> > > > > <a href=)
> > > > > or, via email, send a message with subject or body 'help'
> to
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> openspim-request at openspim.org <openspim-request at openspim.org>>
> > > > >
> > > > > You can reach the person managing the list at
> > >
> > > > > openspim-owner at openspim.org <openspim-owner at openspim.org> <
> openspim-owner at openspim.org <openspim-owner at openspim.org>>
> > > > >
> > > > > When replying, please edit your Subject line so it is more specific
> > > > > than "Re: Contents of OpenSPIM digest..."
> > > > >
> > > > >
> > >
> > > > > Today's Topics:
> > > > >
> > > > > 1. Re: Problems with OpenSPIM system (Ke Li)
> > > > >
> > > > >
> > > > >
> ----------------------------------------------------------------------
> > > > >
> > > > > Message: 1
> > > > > Date: Fri, 27 Jun 2014 22:35:42 -0400
> > >
> > > > > From: Ke Li <tianlankeke at gmail.com <tianlankeke at gmail.com> <
> tianlankeke at gmail.com <tianlankeke at gmail.com>>>
> > > > > To: Kieran Short <kieran.short at gmail.com <kieran.short at gmail.com>
> <kieran.short at gmail.com <kieran.short at gmail.com>>>
> > > > > Cc: openspim at openspim.org <openspim at openspim.org> <
> openspim at openspim.org <openspim at openspim.org>>
> > > > > Subject: Re: [OpenSPIM] Problems with OpenSPIM system
> > > > > Message-ID:
> > >
> > > > > <
> CANQL1FuGbrN-Sm4v+W4utYF1hQTVW_C__xYaguRgf3dEJ3wGKA at mail.gmail.com <
> CANQL1FuGbrN-Sm4v+W4utYF1hQTVW_C__xYaguRgf3dEJ3wGKA at mail.gmail.com> <
> CANQL1FuGbrN-Sm4v+W4utYF1hQTVW_C__xYaguRgf3dEJ3wGKA at mail.gmail.com <
> CANQL1FuGbrN-Sm4v+W4utYF1hQTVW_C__xYaguRgf3dEJ3wGKA at mail.gmail.com>>>
> > > > > Content-Type: text/plain; charset="utf-8"
> > > > >
> > > > > Hi Kieran,
> > > > >
> > > > > Thanks for your detailed info. The 4D stage can be controlled
> normally by
> > >
> > > > > the software from Picard in my system. While I just can't add
> the Z stage
> > > > > when I try to create the hardware configuration wizard by
> micro-manager. So
> > > > > there is no place I can put the serial number of the Z stage in.
> (I can add
> > > > > XY stage and the twister normally and change -1 into the correct
> serial
> > > > > number of the XY stage).
> > > > >
> > > > > I can also reproduce the problem exactly as what Mark did and
> encountered
> > > > > (From Mark: I can reproduce the problem: with no Picard hardware
> connected
> > > > > to the computer, no configuration dialog for the pre-initialization
> > > > > settings (including the serial number) is displayed in the hardware
> > > > > configuration
> > > > > wizard. This is the case for the Twister and Z stage, but not the
> XY stage
> > > > > (at least on my computer).)
> > > > >
> > > > > Thanks,
> > > > > Ke
> > > > >
> > > > > Ke Li
> > > > > Research Assistant
> > > > > Biomedical Engineering
> > > > > Johns Hopkins University
> > >
> > > > > Phone: 410-934-9802(tel:410-934-9802)(tel:410-934-9802(tel:
> 410-934-9802))
> > > > > Email: kli26 at jhu.edu <kli26 at jhu.edu> <kli26 at jhu.edu <kli26 at jhu.edu
> >>
> > > > >
> > > > >
> > > > > On Fri, Jun 27, 2014 at 6:49 PM, Kieran Short <
> kieran.short at gmail.com <kieran.short at gmail.com> <kieran.short at gmail.com <
> kieran.short at gmail.com>>>
> > > > > wrote:
> > > > >
> > > > > > Hi Ke,
> > > > > >
> > > > > > You still can add the seral number to the Z in the Picard
> > > > > > application/program. This is totally independent of micromanager.
> > > > > >
> > > > > > The other thing is, the 4D stage axes are labeled with stickers
> which have
> > > > > > 2 bits of info . 1st is stage name and the other is the serial
> number. The
> > >
> > > > > > stage name doesn't necessarily represent what you think it
> does. Our "Z"
> > > > > > actually translates the stage toward and away from the detection
> objective!
> > >
> > > > > > That doesn't really matter though, I see Z as just a name
> that doesn't
> > > > > > truly reflect its function. It still works fine.
> > > > > >
> > > > > > Once you enter in the correct serial number in the Picard
> application the
> > > > > > indicators for the stage communication in the software should
> turn from red
> > > > > > to green.
> > > > > >
> > > > > > The picard software is*very* strict about this serial number
> setting. I
> > > > > > could use just about any numbers and micromanager worked -- but
> this really
> > > > > > wont.
> > > > > > My feeling is that if you at least have picards app working you
> will know
> > > > > > if its a "driver" problem or not.
> > > > > >
> > >
> > > > > > It'll make Luke's job a lot easier if this is done. Have
> you already done
> > > > > > this and is there communication between the 4d stage and its own
> software
> > > > > > once you have entered tge correct serial numbers?
> > > > > >
> > > > > > Cheers Kieran
> > >
> > > > > > On 28/06/2014 8:17 AM, "Ke Li" <tianlankeke at gmail.com <
> tianlankeke at gmail.com> <tianlankeke at gmail.com <tianlankeke at gmail.com>>>
> wrote:
> > > > > >
> > > > > >> Hi Luke,
> > > > > >>
> > > > > >> Thanks so much. Could you please send the link of the changed
> version to
> > > > > >> me? And since my system is 64-bit, how can I solve the Z stage
> problem (no
> > >
> > > > > >> field to change the serial number since I can't add the Z
> stage first)?
> > > > > >>
> > > > > >> Thanks,
> > > > > >> Ke
> > > > > >>
> > > > > >> Ke Li
> > > > > >> Research Assistant
> > > > > >> Biomedical Engineering
> > > > > >> Johns Hopkins University
> > >
> > > > > >> Phone: 410-934-9802(tel:410-934-9802)(tel:410-934-9802(tel:
> 410-934-9802))
> > > > > >> Email: kli26 at jhu.edu <kli26 at jhu.edu> <kli26 at jhu.edu <
> kli26 at jhu.edu>>
> > > > > >>
> > > > > >>
> > > > > >> On Fri, Jun 27, 2014 at 2:55 PM, Luke Stuyvenberg <
> stuyvenberg at wisc.edu <stuyvenberg at wisc.edu> <stuyvenberg at wisc.edu <
> stuyvenberg at wisc.edu>>>
> > > > > >> wrote:
> > > > > >>
> > > > > >>> Hi everyone,
> > > > > >>>
> > > > > >>> On 06/27/14, Luke Stuyvenberg wrote:
> > >
> > > > > >>> > I'll report back after fixing/testing and
> committing/uploading the
> > > > > >>> device adapter.
> > > > > >>>
> > > > > >>>
> > > > > >>> And so here I am. I've committed the changes to SVN and
> uploaded the
> > > > > >>> 32-bit version of the DLL to the OpenSPIM update site.
> > > > > >>>
> > > > > >>>
> > > > > >>> Mark -- Following your suggestion, those lines were removed --
> in
> > >
> > > > > >>> hindsight, it's not really the correct behavior, and the
> possible issue
> > > > > >>> with obtaining an invalid serial number shouldn't be
> common at all. Thanks!
> > > > > >>>
> > > > > >>>
> > > > > >>> Kieran -- I recently became aware of the homing problem; the
> stage
> > > > > >>> sometimes resets its internal location (when it loses power,
> perhaps?), so
> > > > > >>> over time it will be pushed away. The X/Y stage can be homed
> using the MM
> > > > > >>> Script Panel, running mmc.home("Picard XY Stage") -- the Z
> stage has no
> > > > > >>> appropriate API call, so for the time being, there is a
> property "GoHome"
> > >
> > > > > >>> that will home that stage when set to 1. It's a workaround
> until I can
> > > > > >>> submit a more useful patch to the MM team (though, as an API
> change, that
> > > > > >>> may take a little while).
> > > > > >>>
> > > > > >>>
> > > > > >>> Ke -- Please let me know if there are any more problems; hope
> this helps!
> > > > > >>>
> > > > > >>>
> > > > > >>> Luke
> > > > > >>>
> > > > > >>>
> > > > > >>> On 06/27/14, Luke Stuyvenberg wrote:
> > > > > >>> > Hi Ke, Mark, Johannes,
> > > > > >>> >
> > > > > >>> >
> > > > > >>> > On 06/26/14, Mark Tsuchida wrote:
> > > > > >>> > > Johannes, I also found the cause: OnSerialGeneric() is
> calling the
> > > > > >>> > > Initialize() function, which fails. This happens before
> the Hardware
> > > > > >>> > > Wizard calls Initialize (actually, when the wizard is
> trying to get
> > > > > >>> > > the initial values of the pre-init properties), so the
> wizard has no
> > > > > >>> > > chance to display the configuration dialog.
> > > > > >>> > >
> > > > > >>> > > Simply taking out the calls to Initialize (PicardStage.cpp
> lines
> > >
> > > > > >>> > > 243-245, 258) seems to fix this, but I'm not sure if
> that is all that
> > > > > >>> > > needs to be done (since I don't have a Picard stage
> and cannot figure
> > > > > >>> > > out what the intent of calling Initialize() at this point
> was).
> > > > > >>> > > Johannes, can you take a look at this?
> > > > > >>> >
> > > > > >>> >
> > > > > >>> >
> > > > > >>> > The intent of the Initialize call was to test the serial
> number
> > >
> > > > > >>> received from the Pi-detector, but I didn't account for
> the possibility of
> > > > > >>> CPiDetector returning DEFAULT_SERIAL_UNKNOWN, which it does if
> the
> > >
> > > > > >>> requested device hadn't been found. I'm preparing a
> fix for this that I
> > > > > >>> will submit via SVN as soon as possible.
> > > > > >>> >
> > > > > >>> >
> > > > > >>> > The ultimate issue is this: The Pi-detector only tested
> serial numbers
> > >
> > > > > >>> up to 250. I've doubled this for now, but this is a
> stop-gap measure that
> > > > > >>> causes an ugly pause in the device adding process while it
> probes the
> > > > > >>> serial numbers; I will need to seek a different approach to
> detecting the
> > > > > >>> motors.
> > > > > >>> >
> > > > > >>> >
> > >
> > > > > >>> > I'll report back after fixing/testing and
> committing/uploading the
> > > > > >>> device adapter.
> > > > > >>> >
> > > > > >>> >
> > > > > >>> > Luke
> > > > > >>> >
> > > > > >>> >
> > > > > >>> > On 06/26/14, Mark Tsuchida wrote:
> > > > > >>> > > Hi Ke and Johannes,
> > > > > >>> > >
> > > > > >>> > > On Thu, Jun 26, 2014 at 11:57 AM, Mark Tsuchida <
> > >
> > > > > >>> marktsuchida at gmail.com <marktsuchida at gmail.com> <
> marktsuchida at gmail.com <marktsuchida at gmail.com>>> wrote:
> > > > > >>> > > > On Wed, Jun 25, 2014 at 10:27:54PM -0400, Ke Li wrote:
> > >
> > > > > >>> > > >> 1. I still can't add the Z stage when I create the
> hardware
> > > > > >>> configuration.
> > > > > >>> > > >> I tried both 64-bit and 32-bit Windows system, neither
> can work.
> > > > > >>> Since the
> > >
> > > > > >>> > > >> problem report doesn't give much info, I'm not
> sure whether there
> > > > > >>> are other
> > > > > >>> > > >> ways to solve this problem? And what possible reasons
> can cause
> > > > > >>> the
> > > > > >>> > > >> problem?
> > > > > >>> > > >
> > > > > >>> > > > Are you sure you have the correct serial number for the
> Z stage (as
> > > > > >>> > > > Johannes suggested)? In the problem report you sent us,
> it looked
> > > > > >>> like
> > > > > >>> > > > you had not set the serial number when adding the Z
> stage in the
> > > > > >>> > > > Hardware Configuration Wizard. This causes the device
> adapter to
> > > > > >>> use the
> > > > > >>> > > > serial number "-1", which always results in an error.
> > > > > >>> > > >
> > > > > >>> > > > Do you see a field to enter the serial number for the Z
> stage? If
> > > > > >>> you cannot
> > > > > >>> > > > get it to work even when entering the correct serial
> number, could
> > > > > >>> you try
> > > > > >>> > > > sending another Problem Report?
> > > > > >>> > >
> > >
> > > > > >>> > > Sorry, I hadn't seen your reply to Johannes that
> answered that
> > > > > >>> question of mine.
> > > > > >>> > >
> > > > > >>> > > I can reproduce the problem: with no Picard hardware
> connected to the
> > > > > >>> > > computer, no configuration dialog for the
> pre-initialization settings
> > > > > >>> > > (including the serial number) is displayed in the hardware
> > > > > >>> > > configuration wizard. This is the case for the Twister and
> Z stage,
> > > > > >>> > > but not the XY stage (at least on my computer).
> > > > > >>> > >
> > > > > >>> > > Johannes, I also found the cause: OnSerialGeneric() is
> calling the
> > > > > >>> > > Initialize() function, which fails. This happens before
> the Hardware
> > > > > >>> > > Wizard calls Initialize (actually, when the wizard is
> trying to get
> > > > > >>> > > the initial values of the pre-init properties), so the
> wizard has no
> > > > > >>> > > chance to display the configuration dialog.
> > > > > >>> > >
> > > > > >>> > > Simply taking out the calls to Initialize (PicardStage.cpp
> lines
> > >
> > > > > >>> > > 243-245, 258) seems to fix this, but I'm not sure if
> that is all that
> > > > > >>> > > needs to be done (since I don't have a Picard stage
> and cannot figure
> > > > > >>> > > out what the intent of calling Initialize() at this point
> was).
> > > > > >>> > > Johannes, can you take a look at this?
> > > > > >>> > >
> > > > > >>> > > Best,
> > > > > >>> > > Mark
> > > > > >>> > >
> > > > > >>> > > --
> > > > > >>> > > Mark Tsuchida
> > > > > >>> > > Micro-Manager Team (UCSF Vale Lab)
> > > > > >>> > >
> > > > > >>> > > _______________________________________________
> > > > > >>> > > OpenSPIM mailing list
> > >
> > > > > >>> > > OpenSPIM at openspim.org <OpenSPIM at openspim.org> <
> OpenSPIM at openspim.org <OpenSPIM at openspim.org>>
> > > > > >>> > > http://openspim.org/mailman/listinfo/openspim
> > > > > >>> >
> > > > > >>> > _______________________________________________
> > > > > >>> > OpenSPIM mailing list
> > >
> > > > > >>> > OpenSPIM at openspim.org <OpenSPIM at openspim.org> <
> OpenSPIM at openspim.org <OpenSPIM at openspim.org>>
> > > > > >>> > http://openspim.org/mailman/listinfo/openspim
> > > > > >>>
> > > > > >>
> > > > > >>
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> > > > > ------------------------------
> > > > >
> > > > > _______________________________________________
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> > >
> > > > > OpenSPIM at openspim.org <OpenSPIM at openspim.org> <
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> > > > > http://openspim.org/mailman/listinfo/openspim
> > > > >
> > > > >
> > > > > End of OpenSPIM Digest, Vol 14, Issue 20
> > > > > ****************************************
> > > > >
> > >
> > >
> > >
>
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2014-06-30T18:51:06.868332 tid3868 [IFO,LogManager] Enabled primary log file C:\Users\ah659\Desktop\OpenSPIM-20130131\OpenSPIM.app\CoreLogs\CoreLog20140630T185106_pid5976.txt
2014-06-30T18:51:06.868332 tid3868 [IFO,App] User: ah659
2014-06-30T18:51:06.868332 tid3868 [IFO,App] Host: invert
2014-06-30T18:51:06.868332 tid3868 [IFO,App] MM Studio version: 1.4.x dev
2014-06-30T18:51:06.868332 tid3868 [IFO,App] MMCore version 4.0.4
2014-06-30T18:51:06.868332 tid3868 [IFO,App] Device API version 60, Module API version 10
2014-06-30T18:51:06.868332 tid3868 [IFO,App] Operating System: Windows 7 (x86) 6.1
2014-06-30T18:51:06.868332 tid3868 [IFO,App] JVM: Java HotSpot(TM) Client VM, version 1.6.0_24, 32-bit
2014-06-30T18:51:06.997345 tid340 [IFO,App] Attempting to install plugin spim.SPIMAcquisition
2014-06-30T18:51:07.014346 tid340 [IFO,App] Attempting to install autofocus plugin Autofocus
2014-06-30T18:51:07.016346 tid340 [IFO,App] Attempting to install autofocus plugin AutofocusDuo
2014-06-30T18:51:07.017347 tid340 [IFO,App] Attempting to install autofocus plugin AutofocusTB
2014-06-30T18:51:07.017347 tid340 [IFO,App] Attempting to install autofocus plugin OughtaFocus
2014-06-30T18:51:19.026547 tid3868 [IFO,App] Uncaught exception in AWT/Swing event dispatch thread:
2014-06-30T18:51:19.026547 tid3868 [IFO,App] java.lang.NoSuchMethodError: org.fife.ui.rtextarea.RTextScrollPane: method <init>(Ljava/awt/Component;)V not found
2014-06-30T18:51:19.026547 tid3868 [IFO,App] at org.micromanager.ScriptPanel.<init>(ScriptPanel.java:472)
2014-06-30T18:51:19.026547 tid3868 [IFO,App] at org.micromanager.MMStudioMainFrame.createScriptPanel(MMStudioMainFrame.java:2109)
2014-06-30T18:51:19.026547 tid3868 [IFO,App] at org.micromanager.MMStudioMainFrame.access$1900(MMStudioMainFrame.java:157)
2014-06-30T18:51:19.026547 tid3868 [IFO,App] at org.micromanager.MMStudioMainFrame$1.windowOpened(MMStudioMainFrame.java:542)
2014-06-30T18:51:19.026547 tid3868 [IFO,App] at java.awt.AWTEventMulticaster.windowOpened(AWTEventMulticaster.java:322)
2014-06-30T18:51:19.026547 tid3868 [IFO,App] at java.awt.Window.processWindowEvent(Window.java:1862)
2014-06-30T18:51:19.026547 tid3868 [IFO,App] at javax.swing.JFrame.processWindowEvent(JFrame.java:274)
2014-06-30T18:51:19.026547 tid3868 [IFO,App] at java.awt.Window.processEvent(Window.java:1823)
2014-06-30T18:51:19.026547 tid3868 [IFO,App] at java.awt.Component.dispatchEventImpl(Component.java:4652)
2014-06-30T18:51:19.026547 tid3868 [IFO,App] at java.awt.Container.dispatchEventImpl(Container.java:2099)
2014-06-30T18:51:19.026547 tid3868 [IFO,App] at java.awt.Window.dispatchEventImpl(Window.java:2478)
2014-06-30T18:51:19.026547 tid3868 [IFO,App] at java.awt.Component.dispatchEvent(Component.java:4482)
2014-06-30T18:51:19.026547 tid3868 [IFO,App] at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:644)
2014-06-30T18:51:19.026547 tid3868 [IFO,App] at java.awt.EventQueue.access$000(EventQueue.java:85)
2014-06-30T18:51:19.026547 tid3868 [IFO,App] at java.awt.EventQueue$1.run(EventQueue.java:603)
2014-06-30T18:51:19.026547 tid3868 [IFO,App] at java.awt.EventQueue$1.run(EventQueue.java:601)
2014-06-30T18:51:19.026547 tid3868 [IFO,App] at java.security.AccessController.doPrivileged(Native Method)
2014-06-30T18:51:19.026547 tid3868 [IFO,App] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
2014-06-30T18:51:19.026547 tid3868 [IFO,App] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
2014-06-30T18:51:19.026547 tid3868 [IFO,App] at java.awt.EventQueue$2.run(EventQueue.java:617)
2014-06-30T18:51:19.026547 tid3868 [IFO,App] at java.awt.EventQueue$2.run(EventQueue.java:615)
2014-06-30T18:51:19.026547 tid3868 [IFO,App] at java.security.AccessController.doPrivileged(Native Method)
2014-06-30T18:51:19.026547 tid3868 [IFO,App] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
2014-06-30T18:51:19.026547 tid3868 [IFO,App] at java.awt.EventQueue.dispatchEvent(EventQueue.java:614)
2014-06-30T18:51:19.026547 tid3868 [IFO,App] at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269)
2014-06-30T18:51:19.026547 tid3868 [IFO,App] at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184)
2014-06-30T18:51:19.026547 tid3868 [IFO,App] at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174)
2014-06-30T18:51:19.026547 tid3868 [IFO,App] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169)
2014-06-30T18:51:19.026547 tid3868 [IFO,App] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161)
2014-06-30T18:51:19.026547 tid3868 [IFO,App] at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
2014-06-30T18:51:42.022847 tid3868 [IFO,Core] Did update system state cache
2014-06-30T18:51:44.491094 tid3868 [IFO,Core] Did unload all devices
2014-06-30T18:51:44.491094 tid3868 [IFO,Core] System reset
2014-06-30T18:51:44.545099 tid3868 [IFO,App] CoherentCube
2014-06-30T18:51:44.546099 tid3868 [IFO,App] CoherentCube, CoherentCube Laser
2014-06-30T18:51:44.546099 tid3868 [IFO,App] DemoCamera
2014-06-30T18:51:44.547099 tid3868 [IFO,App] DCam, Demo camera
2014-06-30T18:51:44.547099 tid3868 [IFO,App] DWheel, Demo filter wheel
2014-06-30T18:51:44.547099 tid3868 [IFO,App] DStateDevice, Demo State Device
2014-06-30T18:51:44.547099 tid3868 [IFO,App] DObjective, Demo objective turret
2014-06-30T18:51:44.547099 tid3868 [IFO,App] DStage, Demo stage
2014-06-30T18:51:44.547099 tid3868 [IFO,App] DXYStage, Demo XY stage
2014-06-30T18:51:44.547099 tid3868 [IFO,App] DLightPath, Demo light path
2014-06-30T18:51:44.547099 tid3868 [IFO,App] DAutoFocus, Demo auto focus
2014-06-30T18:51:44.547099 tid3868 [IFO,App] DShutter, Demo shutter
2014-06-30T18:51:44.547099 tid3868 [IFO,App] D-DA, Demo DA
2014-06-30T18:51:44.547099 tid3868 [IFO,App] DOptovar, Demo Optovar
2014-06-30T18:51:44.547099 tid3868 [IFO,App] TransposeProcessor, TransposeProcessor
2014-06-30T18:51:44.547099 tid3868 [IFO,App] ImageFlipX, ImageFlipX
2014-06-30T18:51:44.547099 tid3868 [IFO,App] ImageFlipY, ImageFlipY
2014-06-30T18:51:44.547099 tid3868 [IFO,App] MedianFilter, MedianFilter
2014-06-30T18:51:44.547099 tid3868 [IFO,App] DHub, DHub
2014-06-30T18:51:44.547099 tid3868 [IFO,App] Hamamatsu
2014-06-30T18:51:44.549099 tid3868 [IFO,App] Error: Unable to load Hamamatsu library: Failed to load device adapter "Hamamatsu" [ Failed to load module "C:\Users\ah659\Desktop\OpenSPIM-20130131\OpenSPIM.app\mm\Win32\mmgr_dal_Hamamatsu.dll" [ The module, or a module it depends upon, could not be found (Windows error: The specified module could not be found.) ] ]
2014-06-30T18:51:44.549099 tid3868 [IFO,App] HamamatsuHam
2014-06-30T18:51:44.550099 tid3868 [IFO,App] Error: Unable to load HamamatsuHam library: Failed to load device adapter "HamamatsuHam" [ Failed to load module "C:\Users\ah659\Desktop\OpenSPIM-20130131\OpenSPIM.app\mm\Win32\mmgr_dal_HamamatsuHam.dll" [ The module, or a module it depends upon, could not be found (Windows error: The specified module could not be found.) ] ]
2014-06-30T18:51:44.550099 tid3868 [IFO,App] PicardStage
2014-06-30T18:51:44.553100 tid3868 [IFO,App] Picard Twister, Twister
2014-06-30T18:51:44.553100 tid3868 [IFO,App] Picard Z Stage, Z stage
2014-06-30T18:51:44.553100 tid3868 [IFO,App] Picard XY Stage, XY stage
2014-06-30T18:51:44.553100 tid3868 [IFO,App] PVCAM
2014-06-30T18:51:44.554100 tid3868 [IFO,App] Camera-1, Universal PVCAM interface - camera slot 1
2014-06-30T18:51:44.554100 tid3868 [IFO,App] Camera-2, Universal PVCAM interface - camera slot 2
2014-06-30T18:51:44.554100 tid3868 [IFO,App] Camera-3, Universal PVCAM interface - camera slot 3
2014-06-30T18:51:44.554100 tid3868 [IFO,App] Camera-4, Universal PVCAM interface - camera slot 4
2014-06-30T18:51:44.554100 tid3868 [IFO,App] QCam
2014-06-30T18:51:44.559100 tid3868 [IFO,App] QCamera, QImaging universal camera adapter
2014-06-30T18:51:44.559100 tid3868 [IFO,App] SerialManager
2014-06-30T18:51:44.561101 tid3868 [IFO,App] COM3, Serial communication port
2014-06-30T18:51:44.561101 tid3868 [IFO,App] ThorlabsSC10
2014-06-30T18:51:44.561101 tid3868 [IFO,App] SC10, ThorLabs SC10 shutter controller
2014-06-30T18:51:44.561101 tid3868 [IFO,App] TIScam
2014-06-30T18:51:44.566101 tid3868 [IFO,App] TIS_DCAM, The Imaging Source
2014-06-30T18:51:44.566101 tid3868 [IFO,App] CoherentCube
2014-06-30T18:51:44.566101 tid3868 [IFO,App] CoherentCube, CoherentCube Laser
2014-06-30T18:51:44.566101 tid3868 [IFO,App] DemoCamera
2014-06-30T18:51:44.566101 tid3868 [IFO,App] DCam, Demo camera
2014-06-30T18:51:44.566101 tid3868 [IFO,App] DWheel, Demo filter wheel
2014-06-30T18:51:44.566101 tid3868 [IFO,App] DStateDevice, Demo State Device
2014-06-30T18:51:44.566101 tid3868 [IFO,App] DObjective, Demo objective turret
2014-06-30T18:51:44.566101 tid3868 [IFO,App] DStage, Demo stage
2014-06-30T18:51:44.566101 tid3868 [IFO,App] DXYStage, Demo XY stage
2014-06-30T18:51:44.566101 tid3868 [IFO,App] DLightPath, Demo light path
2014-06-30T18:51:44.566101 tid3868 [IFO,App] DAutoFocus, Demo auto focus
2014-06-30T18:51:44.566101 tid3868 [IFO,App] DShutter, Demo shutter
2014-06-30T18:51:44.566101 tid3868 [IFO,App] D-DA, Demo DA
2014-06-30T18:51:44.566101 tid3868 [IFO,App] DOptovar, Demo Optovar
2014-06-30T18:51:44.566101 tid3868 [IFO,App] TransposeProcessor, TransposeProcessor
2014-06-30T18:51:44.566101 tid3868 [IFO,App] ImageFlipX, ImageFlipX
2014-06-30T18:51:44.566101 tid3868 [IFO,App] ImageFlipY, ImageFlipY
2014-06-30T18:51:44.566101 tid3868 [IFO,App] MedianFilter, MedianFilter
2014-06-30T18:51:44.566101 tid3868 [IFO,App] DHub, DHub
2014-06-30T18:51:44.566101 tid3868 [IFO,App] Hamamatsu
2014-06-30T18:51:44.567101 tid3868 [IFO,App] Error: Unable to load Hamamatsu library: Failed to load device adapter "Hamamatsu" [ Failed to load module "C:\Users\ah659\Desktop\OpenSPIM-20130131\OpenSPIM.app\mm\Win32\mmgr_dal_Hamamatsu.dll" [ The module, or a module it depends upon, could not be found (Windows error: The specified module could not be found.) ] ]
2014-06-30T18:51:44.568101 tid3868 [IFO,App] HamamatsuHam
2014-06-30T18:51:44.568101 tid3868 [IFO,App] Error: Unable to load HamamatsuHam library: Failed to load device adapter "HamamatsuHam" [ Failed to load module "C:\Users\ah659\Desktop\OpenSPIM-20130131\OpenSPIM.app\mm\Win32\mmgr_dal_HamamatsuHam.dll" [ The module, or a module it depends upon, could not be found (Windows error: The specified module could not be found.) ] ]
2014-06-30T18:51:44.568101 tid3868 [IFO,App] PicardStage
2014-06-30T18:51:44.569101 tid3868 [IFO,App] Picard Twister, Twister
2014-06-30T18:51:44.569101 tid3868 [IFO,App] Picard Z Stage, Z stage
2014-06-30T18:51:44.569101 tid3868 [IFO,App] Picard XY Stage, XY stage
2014-06-30T18:51:44.569101 tid3868 [IFO,App] PVCAM
2014-06-30T18:51:44.569101 tid3868 [IFO,App] Camera-1, Universal PVCAM interface - camera slot 1
2014-06-30T18:51:44.569101 tid3868 [IFO,App] Camera-2, Universal PVCAM interface - camera slot 2
2014-06-30T18:51:44.569101 tid3868 [IFO,App] Camera-3, Universal PVCAM interface - camera slot 3
2014-06-30T18:51:44.569101 tid3868 [IFO,App] Camera-4, Universal PVCAM interface - camera slot 4
2014-06-30T18:51:44.569101 tid3868 [IFO,App] QCam
2014-06-30T18:51:44.569101 tid3868 [IFO,App] QCamera, QImaging universal camera adapter
2014-06-30T18:51:44.569101 tid3868 [IFO,App] SerialManager
2014-06-30T18:51:44.569101 tid3868 [IFO,App] COM3, Serial communication port
2014-06-30T18:51:44.569101 tid3868 [IFO,App] ThorlabsSC10
2014-06-30T18:51:44.569101 tid3868 [IFO,App] SC10, ThorLabs SC10 shutter controller
2014-06-30T18:51:44.569101 tid3868 [IFO,App] TIScam
2014-06-30T18:51:44.569101 tid3868 [IFO,App] TIS_DCAM, The Imaging Source
2014-06-30T18:51:47.381383 tid3868 [IFO,Core] Did load device COM3 from SerialManager; label = COM3
2014-06-30T18:51:47.381383 tid3868 [ERR,Core] Error occurred in device MMCore::loadDevice: The specified label "COM3" is already in use
2014-06-30T18:51:47.382383 tid3868 [IFO,App]
[ ] java.lang.Exception: The specified label "COM3" is already in use in Thread[AWT-EventQueue-0,6,main]
[ ] at mmcorej.MMCoreJJNI.CMMCore_loadDevice(Native Method)
[ ] at mmcorej.CMMCore.loadDevice(CMMCore.java:229)
[ ] at org.micromanager.conf2.MicroscopeModel.loadModel(MicroscopeModel.java:1459)
[ ] at org.micromanager.conf2.DevicesPage.enterPage(DevicesPage.java:497)
[ ] at org.micromanager.conf2.ConfiguratorDlg2.setPage(ConfiguratorDlg2.java:234)
[ ] at org.micromanager.conf2.ConfiguratorDlg2.access$300(ConfiguratorDlg2.java:76)
[ ] at org.micromanager.conf2.ConfiguratorDlg2$2.actionPerformed(ConfiguratorDlg2.java:152)
[ ] at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:1995)
[ ] at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2318)
[ ] at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:387)
[ ] at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:242)
[ ] at javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:236)
[ ] at java.awt.Component.processMouseEvent(Component.java:6289)
[ ] at javax.swing.JComponent.processMouseEvent(JComponent.java:3267)
[ ] at java.awt.Component.processEvent(Component.java:6054)
[ ] at java.awt.Container.processEvent(Container.java:2041)
[ ] at java.awt.Component.dispatchEventImpl(Component.java:4652)
[ ] at java.awt.Container.dispatchEventImpl(Container.java:2099)
[ ] at java.awt.Component.dispatchEvent(Component.java:4482)
[ ] at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4577)
[ ] at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4238)
[ ] at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4168)
[ ] at java.awt.Container.dispatchEventImpl(Container.java:2085)
[ ] at java.awt.Window.dispatchEventImpl(Window.java:2478)
[ ] at java.awt.Component.dispatchEvent(Component.java:4482)
[ ] at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:644)
[ ] at java.awt.EventQueue.access$000(EventQueue.java:85)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:603)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:601)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:617)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:615)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.awt.EventQueue.dispatchEvent(EventQueue.java:614)
[ ] at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269)
[ ] at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184)
[ ] at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:178)
[ ] at java.awt.Dialog$1.run(Dialog.java:1046)
[ ] at java.awt.Dialog$3.run(Dialog.java:1098)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.awt.Dialog.show(Dialog.java:1096)
[ ] at java.awt.Component.show(Component.java:1585)
[ ] at java.awt.Component.setVisible(Component.java:1537)
[ ] at java.awt.Window.setVisible(Window.java:842)
[ ] at java.awt.Dialog.setVisible(Dialog.java:986)
[ ] at org.micromanager.MMStudioMainFrame.runHardwareWizard(MMStudioMainFrame.java:3292)
[ ] at org.micromanager.MMStudioMainFrame.access$5400(MMStudioMainFrame.java:157)
[ ] at org.micromanager.MMStudioMainFrame$40.run(MMStudioMainFrame.java:1423)
[ ] at org.micromanager.utils.GUIUtils$3.actionPerformed(GUIUtils.java:303)
[ ] at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:1995)
[ ] at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2318)
[ ] at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:387)
[ ] at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:242)
[ ] at javax.swing.AbstractButton.doClick(AbstractButton.java:357)
[ ] at javax.swing.plaf.basic.BasicMenuItemUI.doClick(BasicMenuItemUI.java:809)
[ ] at javax.swing.plaf.basic.BasicMenuItemUI$Handler.mouseReleased(BasicMenuItemUI.java:850)
[ ] at java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:272)
[ ] at java.awt.Component.processMouseEvent(Component.java:6289)
[ ] at javax.swing.JComponent.processMouseEvent(JComponent.java:3267)
[ ] at java.awt.Component.processEvent(Component.java:6054)
[ ] at java.awt.Container.processEvent(Container.java:2041)
[ ] at java.awt.Component.dispatchEventImpl(Component.java:4652)
[ ] at java.awt.Container.dispatchEventImpl(Container.java:2099)
[ ] at java.awt.Component.dispatchEvent(Component.java:4482)
[ ] at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4577)
[ ] at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4238)
[ ] at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4168)
[ ] at java.awt.Container.dispatchEventImpl(Container.java:2085)
[ ] at java.awt.Window.dispatchEventImpl(Window.java:2478)
[ ] at java.awt.Component.dispatchEvent(Component.java:4482)
[ ] at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:644)
[ ] at java.awt.EventQueue.access$000(EventQueue.java:85)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:603)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:601)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:617)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:615)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.awt.EventQueue.dispatchEvent(EventQueue.java:614)
[ ] at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269)
[ ] at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184)
[ ] at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161)
[ ] at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
2014-06-30T18:51:48.518496 tid3868 [IFO,Core] Did unload all devices
2014-06-30T18:51:53.252970 tid3868 [IFO,Core] Did load device Camera-1 from PVCAM; label = Camera-1
2014-06-30T18:51:54.574102 tid3868 [IFO,Core] Will initialize device Camera-1
2014-06-30T18:51:54.576102 tid3868 [IFO,dev:Camera-1] PVCAM VERSION: 3.0.3. Number of cameras detected: 2
2014-06-30T18:51:54.613106 tid3868 [IFO,dev:Camera-1] Building Speed Table
2014-06-30T18:51:54.730117 tid3868 [IFO,dev:Camera-1] Initializing Static Camera Properties
2014-06-30T18:51:54.741118 tid3868 [IFO,dev:Camera-1] Initializing Dynamic Camera Properties
2014-06-30T18:51:54.783123 tid3868 [IFO,dev:Camera-1] This Camera does not have EM Gain
2014-06-30T18:51:54.783123 tid3868 [IFO,dev:Camera-1] Frame Transfer mode not available
2014-06-30T18:51:54.831127 tid3868 [IFO,dev:Camera-1] Using PVCAM callbacks for frame acquisition
2014-06-30T18:51:54.831127 tid3868 [IFO,Core] Did initialize device Camera-1
2014-06-30T18:51:59.342579 tid3868 [IFO,Core] Did load device SC10 from ThorlabsSC10; label = SC10
2014-06-30T18:52:01.206765 tid3868 [IFO,Core] Did load device COM3 from SerialManager; label = COM3
2014-06-30T18:52:03.720016 tid3868 [IFO,Core] Did load device COM3 from SerialManager; label = COM3
2014-06-30T18:52:03.720016 tid3868 [IFO,Core] Will initialize device COM3
2014-06-30T18:52:03.741018 tid3868 [IFO,Core] Did initialize device COM3
2014-06-30T18:52:04.741118 tid3868 [IFO,Core] Will initialize device SC10
2014-06-30T18:52:04.793124 tid3868 [IFO,dev:SC10] THORLABS SC10 VERSION 1.07
2014-06-30T18:52:04.809125 tid3868 [IFO,Core] Did initialize device SC10
2014-06-30T18:52:10.391683 tid3868 [IFO,Core] Did load device Picard Twister from PicardStage; label = Picard Twister
2014-06-30T18:52:10.391683 tid3868 [IFO,dev:Picard Twister] Pinging motors...
2014-06-30T18:52:11.773822 tid3868 [IFO,dev:Picard Twister] Found 3 motors and 1 twisters.
2014-06-30T18:52:11.786823 tid3868 [IFO,App] COM3, property AnswerTimeout=500.0000
2014-06-30T18:52:11.786823 tid3868 [IFO,App] COM3, property BaudRate=9600
2014-06-30T18:52:11.786823 tid3868 [IFO,App] COM3, property DelayBetweenCharsMs=0.0000
2014-06-30T18:52:11.786823 tid3868 [IFO,App] COM3, property Handshaking=Off
2014-06-30T18:52:11.786823 tid3868 [IFO,App] COM3, property Parity=None
2014-06-30T18:52:11.786823 tid3868 [IFO,App] COM3, property StopBits=1
2014-06-30T18:52:11.786823 tid3868 [IFO,App] COM3, property Verbose=1
2014-06-30T18:52:11.786823 tid3868 [IFO,App] COM3, property AnswerTimeout=500.0000
2014-06-30T18:52:11.786823 tid3868 [IFO,App] COM3, property BaudRate=9600
2014-06-30T18:52:11.786823 tid3868 [IFO,App] COM3, property DelayBetweenCharsMs=0.0000
2014-06-30T18:52:11.786823 tid3868 [IFO,App] COM3, property Handshaking=Off
2014-06-30T18:52:11.786823 tid3868 [IFO,App] COM3, property Parity=None
2014-06-30T18:52:11.786823 tid3868 [IFO,App] COM3, property StopBits=1
2014-06-30T18:52:11.786823 tid3868 [IFO,App] COM3, property Verbose=1
2014-06-30T18:52:12.966941 tid3868 [IFO,Core] Will initialize device Picard Twister
2014-06-30T18:52:12.998944 tid3868 [IFO,Core] Did initialize device Picard Twister
2014-06-30T18:52:14.833127 tid3868 [IFO,Core] Did load device Picard Z Stage from PicardStage; label = Picard Z Stage
2014-06-30T18:52:14.883132 tid3868 [IFO,App] COM3, property AnswerTimeout=500.0000
2014-06-30T18:52:14.883132 tid3868 [IFO,App] COM3, property BaudRate=9600
2014-06-30T18:52:14.883132 tid3868 [IFO,App] COM3, property DelayBetweenCharsMs=0.0000
2014-06-30T18:52:14.883132 tid3868 [IFO,App] COM3, property Handshaking=Off
2014-06-30T18:52:14.883132 tid3868 [IFO,App] COM3, property Parity=None
2014-06-30T18:52:14.883132 tid3868 [IFO,App] COM3, property StopBits=1
2014-06-30T18:52:14.883132 tid3868 [IFO,App] COM3, property Verbose=1
2014-06-30T18:52:14.883132 tid3868 [IFO,App] COM3, property AnswerTimeout=500.0000
2014-06-30T18:52:14.883132 tid3868 [IFO,App] COM3, property BaudRate=9600
2014-06-30T18:52:14.883132 tid3868 [IFO,App] COM3, property DelayBetweenCharsMs=0.0000
2014-06-30T18:52:14.883132 tid3868 [IFO,App] COM3, property Handshaking=Off
2014-06-30T18:52:14.883132 tid3868 [IFO,App] COM3, property Parity=None
2014-06-30T18:52:14.883132 tid3868 [IFO,App] COM3, property StopBits=1
2014-06-30T18:52:14.883132 tid3868 [IFO,App] COM3, property Verbose=1
2014-06-30T18:52:16.255270 tid3868 [IFO,Core] Will initialize device Picard Z Stage
2014-06-30T18:52:16.286273 tid3868 [IFO,Core] Did initialize device Picard Z Stage
2014-06-30T18:52:18.088453 tid3868 [IFO,Core] Did load device Picard XY Stage from PicardStage; label = Picard XY Stage
2014-06-30T18:52:18.198464 tid3868 [IFO,App] COM3, property AnswerTimeout=500.0000
2014-06-30T18:52:18.198464 tid3868 [IFO,App] COM3, property BaudRate=9600
2014-06-30T18:52:18.198464 tid3868 [IFO,App] COM3, property DelayBetweenCharsMs=0.0000
2014-06-30T18:52:18.198464 tid3868 [IFO,App] COM3, property Handshaking=Off
2014-06-30T18:52:18.198464 tid3868 [IFO,App] COM3, property Parity=None
2014-06-30T18:52:18.198464 tid3868 [IFO,App] COM3, property StopBits=1
2014-06-30T18:52:18.198464 tid3868 [IFO,App] COM3, property Verbose=1
2014-06-30T18:52:18.198464 tid3868 [IFO,App] COM3, property AnswerTimeout=500.0000
2014-06-30T18:52:18.198464 tid3868 [IFO,App] COM3, property BaudRate=9600
2014-06-30T18:52:18.198464 tid3868 [IFO,App] COM3, property DelayBetweenCharsMs=0.0000
2014-06-30T18:52:18.198464 tid3868 [IFO,App] COM3, property Handshaking=Off
2014-06-30T18:52:18.198464 tid3868 [IFO,App] COM3, property Parity=None
2014-06-30T18:52:18.198464 tid3868 [IFO,App] COM3, property StopBits=1
2014-06-30T18:52:18.198464 tid3868 [IFO,App] COM3, property Verbose=1
2014-06-30T18:52:19.306575 tid3868 [IFO,Core] Will initialize device Picard XY Stage
2014-06-30T18:52:19.338578 tid3868 [IFO,Core] Did initialize device Picard XY Stage
2014-06-30T18:52:30.291673 tid3868 [IFO,Core] Did unload all devices
2014-06-30T18:52:32.533897 tid3868 [IFO,Core] Did unload all devices
2014-06-30T18:52:32.588903 tid3868 [IFO,Core] Did load device COM3 from SerialManager; label = COM3
2014-06-30T18:52:32.588903 tid3868 [ERR,Core] Error occurred in device MMCore::loadDevice: The specified label "COM3" is already in use
2014-06-30T18:52:32.588903 tid3868 [IFO,Core] Did load device Camera-1 from PVCAM; label = Camera-1
2014-06-30T18:52:32.588903 tid3868 [IFO,Core] Did load device SC10 from ThorlabsSC10; label = SC10
2014-06-30T18:52:32.588903 tid3868 [IFO,Core] Did load device Picard Twister from PicardStage; label = Picard Twister
2014-06-30T18:52:32.588903 tid3868 [IFO,Core] Did load device Picard Z Stage from PicardStage; label = Picard Z Stage
2014-06-30T18:52:32.589903 tid3868 [IFO,Core] Did load device Picard XY Stage from PicardStage; label = Picard XY Stage
2014-06-30T18:52:32.683912 tid3868 [IFO,Core] Will initialize 6 devices
2014-06-30T18:52:32.683912 tid3868 [IFO,Core] Will initialize device COM3
2014-06-30T18:52:32.694913 tid3868 [IFO,Core] Did initialize device COM3
2014-06-30T18:52:32.694913 tid3868 [IFO,Core] Will initialize device Camera-1
2014-06-30T18:52:32.696914 tid3868 [IFO,dev:Camera-1] PVCAM VERSION: 3.0.3. Number of cameras detected: 2
2014-06-30T18:52:32.725917 tid3868 [IFO,dev:Camera-1] Building Speed Table
2014-06-30T18:52:32.841928 tid3868 [IFO,dev:Camera-1] Initializing Static Camera Properties
2014-06-30T18:52:32.853929 tid3868 [IFO,dev:Camera-1] Initializing Dynamic Camera Properties
2014-06-30T18:52:32.894933 tid3868 [IFO,dev:Camera-1] This Camera does not have EM Gain
2014-06-30T18:52:32.894933 tid3868 [IFO,dev:Camera-1] Frame Transfer mode not available
2014-06-30T18:52:32.942938 tid3868 [IFO,dev:Camera-1] Using PVCAM callbacks for frame acquisition
2014-06-30T18:52:32.942938 tid3868 [IFO,Core] Did initialize device Camera-1
2014-06-30T18:52:32.942938 tid3868 [IFO,Core] Default camera set to Camera-1
2014-06-30T18:52:32.942938 tid3868 [IFO,Core] Will initialize device SC10
2014-06-30T18:52:32.995944 tid3868 [IFO,dev:SC10] THORLABS SC10 VERSION 1.07
2014-06-30T18:52:33.012945 tid3868 [IFO,Core] Did initialize device SC10
2014-06-30T18:52:33.012945 tid3868 [IFO,Core] Default shutter set to SC10
2014-06-30T18:52:33.012945 tid3868 [IFO,Core] Will initialize device Picard Twister
2014-06-30T18:52:33.030947 tid3868 [IFO,Core] Did initialize device Picard Twister
2014-06-30T18:52:33.030947 tid3868 [IFO,Core] Will initialize device Picard Z Stage
2014-06-30T18:52:33.054949 tid3868 [IFO,Core] Did initialize device Picard Z Stage
2014-06-30T18:52:33.054949 tid3868 [IFO,Core] Will initialize device Picard XY Stage
2014-06-30T18:52:33.066951 tid3868 [IFO,Core] Did initialize device Picard XY Stage
2014-06-30T18:52:33.066951 tid3868 [IFO,Core] Default xy stage set to Picard XY Stage
2014-06-30T18:52:33.066951 tid3868 [IFO,Core] Finished initializing 6 devices
2014-06-30T18:52:33.067951 tid3868 [IFO,Core] Default camera set to Camera-1
2014-06-30T18:52:33.067951 tid3868 [IFO,Core] Default stage set to Picard Z Stage
2014-06-30T18:52:33.071951 tid3868 [IFO,App]
[ ] java.lang.Exception: Line 8: Device,COM3,SerialManager,COM3
[ ] The specified label "COM3" is already in use
[ ]
[ ] in Thread[AWT-EventQueue-0,6,main]
[ ] at mmcorej.MMCoreJJNI.CMMCore_loadSystemConfiguration(Native Method)
[ ] at mmcorej.CMMCore.loadSystemConfiguration(CMMCore.java:313)
[ ] at org.micromanager.MMStudioMainFrame.loadSystemConfiguration(MMStudioMainFrame.java:3151)
[ ] at org.micromanager.MMStudioMainFrame.runHardwareWizard(MMStudioMainFrame.java:3299)
[ ] at org.micromanager.MMStudioMainFrame.access$5400(MMStudioMainFrame.java:157)
[ ] at org.micromanager.MMStudioMainFrame$40.run(MMStudioMainFrame.java:1423)
[ ] at org.micromanager.utils.GUIUtils$3.actionPerformed(GUIUtils.java:303)
[ ] at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:1995)
[ ] at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2318)
[ ] at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:387)
[ ] at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:242)
[ ] at javax.swing.AbstractButton.doClick(AbstractButton.java:357)
[ ] at javax.swing.plaf.basic.BasicMenuItemUI.doClick(BasicMenuItemUI.java:809)
[ ] at javax.swing.plaf.basic.BasicMenuItemUI$Handler.mouseReleased(BasicMenuItemUI.java:850)
[ ] at java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:272)
[ ] at java.awt.Component.processMouseEvent(Component.java:6289)
[ ] at javax.swing.JComponent.processMouseEvent(JComponent.java:3267)
[ ] at java.awt.Component.processEvent(Component.java:6054)
[ ] at java.awt.Container.processEvent(Container.java:2041)
[ ] at java.awt.Component.dispatchEventImpl(Component.java:4652)
[ ] at java.awt.Container.dispatchEventImpl(Container.java:2099)
[ ] at java.awt.Component.dispatchEvent(Component.java:4482)
[ ] at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4577)
[ ] at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4238)
[ ] at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4168)
[ ] at java.awt.Container.dispatchEventImpl(Container.java:2085)
[ ] at java.awt.Window.dispatchEventImpl(Window.java:2478)
[ ] at java.awt.Component.dispatchEvent(Component.java:4482)
[ ] at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:644)
[ ] at java.awt.EventQueue.access$000(EventQueue.java:85)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:603)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:601)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:617)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:615)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.awt.EventQueue.dispatchEvent(EventQueue.java:614)
[ ] at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269)
[ ] at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184)
[ ] at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161)
[ ] at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
2014-06-30T18:52:34.817126 tid3868 [IFO,dev:SC10] 0
2014-06-30T18:52:34.821126 tid3868 [IFO,Core] Did update system state cache
2014-06-30T18:52:39.048549 tid3868 [IFO,dev:SC10] 0
2014-06-30T18:52:39.083552 tid3868 [IFO,dev:Camera-1] Started sequence on Camera-1, at 457469559 83552, with 2147483647 and 0 ms
2014-06-30T18:52:39.665610 tid3868 [IFO,App]
[ ] java.lang.NullPointerException in Thread[AWT-EventQueue-0,6,main]
[ ] at org.micromanager.MMStudioMainFrame.updateCenterAndDragListener(MMStudioMainFrame.java:2240)
[ ] at org.micromanager.MMStudioMainFrame.checkSimpleAcquisition(MMStudioMainFrame.java:793)
[ ] at org.micromanager.MMStudioMainFrame.checkSimpleAcquisition(MMStudioMainFrame.java:812)
[ ] at org.micromanager.acquisition.LiveModeTimer.begin(LiveModeTimer.java:181)
[ ] at org.micromanager.MMStudioMainFrame.enableLiveMode(MMStudioMainFrame.java:3881)
[ ] at org.micromanager.MMStudioMainFrame$10.run(MMStudioMainFrame.java:1018)
[ ] at org.micromanager.utils.GUIUtils$4.actionPerformed(GUIUtils.java:404)
[ ] at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:1995)
[ ] at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2318)
[ ] at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:387)
[ ] at javax.swing.JToggleButton$ToggleButtonModel.setPressed(JToggleButton.java:291)
[ ] at javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:236)
[ ] at java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:272)
[ ] at java.awt.Component.processMouseEvent(Component.java:6289)
[ ] at javax.swing.JComponent.processMouseEvent(JComponent.java:3267)
[ ] at java.awt.Component.processEvent(Component.java:6054)
[ ] at java.awt.Container.processEvent(Container.java:2041)
[ ] at java.awt.Component.dispatchEventImpl(Component.java:4652)
[ ] at java.awt.Container.dispatchEventImpl(Container.java:2099)
[ ] at java.awt.Component.dispatchEvent(Component.java:4482)
[ ] at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4577)
[ ] at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4238)
[ ] at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4168)
[ ] at java.awt.Container.dispatchEventImpl(Container.java:2085)
[ ] at java.awt.Window.dispatchEventImpl(Window.java:2478)
[ ] at java.awt.Component.dispatchEvent(Component.java:4482)
[ ] at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:644)
[ ] at java.awt.EventQueue.access$000(EventQueue.java:85)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:603)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:601)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:617)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:615)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.awt.EventQueue.dispatchEvent(EventQueue.java:614)
[ ] at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269)
[ ] at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184)
[ ] at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161)
[ ] at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
2014-06-30T18:52:43.003944 tid1784 [IFO,App] Stop called in LivemodeTimer, true
2014-06-30T18:52:43.043948 tid1784 [IFO,dev:SC10] 1
2014-06-30T18:52:45.438188 tid3868 [IFO,App] Plugin command: Acquire SPIM image
2014-06-30T18:52:45.452189 tid3868 [IFO,Core] Will initialize 6 devices
2014-06-30T18:52:45.452189 tid3868 [IFO,Core] Will initialize device COM3
2014-06-30T18:52:45.452189 tid3868 [IFO,Core] Did initialize device COM3
2014-06-30T18:52:45.452189 tid3868 [IFO,Core] Will initialize device Camera-1
2014-06-30T18:52:45.452189 tid3868 [IFO,dev:Camera-1] PVCAM VERSION: 3.0.3. Number of cameras detected: 2
2014-06-30T18:52:45.452189 tid3868 [IFO,dev:Camera-1] PVCAM API error: "C0_CAM_NAME_NOT_FOUND This is not a valid name for opening the camera", code: 14
[ ] In file: PVCAMUniversal.cpp, line: 325, pl_cam_open
2014-06-30T18:52:45.452189 tid3868 [ERR,Core] Error occurred in device Camera-1: Error in device Camera-1: C0_CAM_NAME_NOT_FOUND This is not a valid name for opening the camera.
2014-06-30T18:52:45.452189 tid3868 [ERR,Core] Error occurred in device setPixelSizeConfig: Device error encountered.
2014-06-30T18:52:45.453189 tid3868 [IFO,App] Couldn't define uncalibrated pixel size:
2014-06-30T18:52:45.453189 tid3868 [IFO,App] java.lang.Exception: Error in device Camera-1: C0_CAM_NAME_NOT_FOUND This is not a valid name for opening the camera.
[ ] at mmcorej.MMCoreJJNI.CMMCore_setPixelSizeConfig(Native Method)
[ ] at mmcorej.CMMCore.setPixelSizeConfig(CMMCore.java:777)
[ ] at spim.SPIMAcquisition.ensurePixelResolution(SPIMAcquisition.java:263)
[ ] at spim.SPIMAcquisition.show(SPIMAcquisition.java:220)
[ ] at org.micromanager.MMStudioMainFrame.displayPlugin(MMStudioMainFrame.java:2755)
[ ] at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:157)
[ ] at org.micromanager.MMStudioMainFrame$49.run(MMStudioMainFrame.java:2720)
[ ] at org.micromanager.utils.GUIUtils$3.actionPerformed(GUIUtils.java:303)
[ ] at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:1995)
[ ] at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2318)
[ ] at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:387)
[ ] at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:242)
[ ] at javax.swing.AbstractButton.doClick(AbstractButton.java:357)
[ ] at javax.swing.plaf.basic.BasicMenuItemUI.doClick(BasicMenuItemUI.java:809)
[ ] at javax.swing.plaf.basic.BasicMenuItemUI$Handler.mouseReleased(BasicMenuItemUI.java:850)
[ ] at java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:272)
[ ] at java.awt.Component.processMouseEvent(Component.java:6289)
[ ] at javax.swing.JComponent.processMouseEvent(JComponent.java:3267)
[ ] at java.awt.Component.processEvent(Component.java:6054)
[ ] at java.awt.Container.processEvent(Container.java:2041)
[ ] at java.awt.Component.dispatchEventImpl(Component.java:4652)
[ ] at java.awt.Container.dispatchEventImpl(Container.java:2099)
[ ] at java.awt.Component.dispatchEvent(Component.java:4482)
[ ] at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4577)
[ ] at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4238)
[ ] at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4168)
[ ] at java.awt.Container.dispatchEventImpl(Container.java:2085)
[ ] at java.awt.Window.dispatchEventImpl(Window.java:2478)
[ ] at java.awt.Component.dispatchEvent(Component.java:4482)
[ ] at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:644)
[ ] at java.awt.EventQueue.access$000(EventQueue.java:85)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:603)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:601)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:617)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:615)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.awt.EventQueue.dispatchEvent(EventQueue.java:614)
[ ] at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269)
[ ] at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184)
[ ] at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161)
[ ] at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
2014-06-30T18:52:45.523196 tid3868 [IFO,App] Uncaught exception in AWT/Swing event dispatch thread:
2014-06-30T18:52:45.523196 tid3868 [IFO,App] java.lang.IllegalArgumentException: invalid range properties
2014-06-30T18:52:45.523196 tid3868 [IFO,App] at javax.swing.DefaultBoundedRangeModel.<init>(DefaultBoundedRangeModel.java:85)
2014-06-30T18:52:45.523196 tid3868 [IFO,App] at javax.swing.JSlider.<init>(JSlider.java:259)
2014-06-30T18:52:45.523196 tid3868 [IFO,App] at javax.swing.JSlider.<init>(JSlider.java:226)
2014-06-30T18:52:45.523196 tid3868 [IFO,App] at spim.SteppedSlider.<init>(SteppedSlider.java:63)
2014-06-30T18:52:45.523196 tid3868 [IFO,App] at spim.SPIMAcquisition$19.<init>(SPIMAcquisition.java:1042)
2014-06-30T18:52:45.523196 tid3868 [IFO,App] at spim.SPIMAcquisition.makeStageSlider(SPIMAcquisition.java:1042)
2014-06-30T18:52:45.523196 tid3868 [IFO,App] at spim.SPIMAcquisition.initUI(SPIMAcquisition.java:367)
2014-06-30T18:52:45.523196 tid3868 [IFO,App] at spim.SPIMAcquisition.show(SPIMAcquisition.java:221)
2014-06-30T18:52:45.523196 tid3868 [IFO,App] at org.micromanager.MMStudioMainFrame.displayPlugin(MMStudioMainFrame.java:2755)
2014-06-30T18:52:45.523196 tid3868 [IFO,App] at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:157)
2014-06-30T18:52:45.523196 tid3868 [IFO,App] at org.micromanager.MMStudioMainFrame$49.run(MMStudioMainFrame.java:2720)
2014-06-30T18:52:45.523196 tid3868 [IFO,App] at org.micromanager.utils.GUIUtils$3.actionPerformed(GUIUtils.java:303)
2014-06-30T18:52:45.523196 tid3868 [IFO,App] at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:1995)
2014-06-30T18:52:45.523196 tid3868 [IFO,App] at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2318)
2014-06-30T18:52:45.523196 tid3868 [IFO,App] at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:387)
2014-06-30T18:52:45.523196 tid3868 [IFO,App] at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:242)
2014-06-30T18:52:45.523196 tid3868 [IFO,App] at javax.swing.AbstractButton.doClick(AbstractButton.java:357)
2014-06-30T18:52:45.523196 tid3868 [IFO,App] at javax.swing.plaf.basic.BasicMenuItemUI.doClick(BasicMenuItemUI.java:809)
2014-06-30T18:52:45.523196 tid3868 [IFO,App] at javax.swing.plaf.basic.BasicMenuItemUI$Handler.mouseReleased(BasicMenuItemUI.java:850)
2014-06-30T18:52:45.523196 tid3868 [IFO,App] at java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:272)
2014-06-30T18:52:45.523196 tid3868 [IFO,App] at java.awt.Component.processMouseEvent(Component.java:6289)
2014-06-30T18:52:45.523196 tid3868 [IFO,App] at javax.swing.JComponent.processMouseEvent(JComponent.java:3267)
2014-06-30T18:52:45.523196 tid3868 [IFO,App] at java.awt.Component.processEvent(Component.java:6054)
2014-06-30T18:52:45.523196 tid3868 [IFO,App] at java.awt.Container.processEvent(Container.java:2041)
2014-06-30T18:52:45.523196 tid3868 [IFO,App] at java.awt.Component.dispatchEventImpl(Component.java:4652)
2014-06-30T18:52:45.523196 tid3868 [IFO,App] at java.awt.Container.dispatchEventImpl(Container.java:2099)
2014-06-30T18:52:45.523196 tid3868 [IFO,App] at java.awt.Component.dispatchEvent(Component.java:4482)
2014-06-30T18:52:45.523196 tid3868 [IFO,App] at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4577)
2014-06-30T18:52:45.523196 tid3868 [IFO,App] at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4238)
2014-06-30T18:52:45.523196 tid3868 [IFO,App] at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4168)
2014-06-30T18:52:45.523196 tid3868 [IFO,App] at java.awt.Container.dispatchEventImpl(Container.java:2085)
2014-06-30T18:52:45.523196 tid3868 [IFO,App] at java.awt.Window.dispatchEventImpl(Window.java:2478)
2014-06-30T18:52:45.523196 tid3868 [IFO,App] at java.awt.Component.dispatchEvent(Component.java:4482)
2014-06-30T18:52:45.523196 tid3868 [IFO,App] at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:644)
2014-06-30T18:52:45.523196 tid3868 [IFO,App] at java.awt.EventQueue.access$000(EventQueue.java:85)
2014-06-30T18:52:45.523196 tid3868 [IFO,App] at java.awt.EventQueue$1.run(EventQueue.java:603)
2014-06-30T18:52:45.523196 tid3868 [IFO,App] at java.awt.EventQueue$1.run(EventQueue.java:601)
2014-06-30T18:52:45.523196 tid3868 [IFO,App] at java.security.AccessController.doPrivileged(Native Method)
2014-06-30T18:52:45.523196 tid3868 [IFO,App] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
2014-06-30T18:52:45.523196 tid3868 [IFO,App] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
2014-06-30T18:52:45.523196 tid3868 [IFO,App] at java.awt.EventQueue$2.run(EventQueue.java:617)
2014-06-30T18:52:45.523196 tid3868 [IFO,App] at java.awt.EventQueue$2.run(EventQueue.java:615)
2014-06-30T18:52:45.523196 tid3868 [IFO,App] at java.security.AccessController.doPrivileged(Native Method)
2014-06-30T18:52:45.523196 tid3868 [IFO,App] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
2014-06-30T18:52:45.523196 tid3868 [IFO,App] at java.awt.EventQueue.dispatchEvent(EventQueue.java:614)
2014-06-30T18:52:45.523196 tid3868 [IFO,App] at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269)
2014-06-30T18:52:45.523196 tid3868 [IFO,App] at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184)
2014-06-30T18:52:45.523196 tid3868 [IFO,App] at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174)
2014-06-30T18:52:45.523196 tid3868 [IFO,App] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169)
2014-06-30T18:52:45.523196 tid3868 [IFO,App] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161)
2014-06-30T18:52:45.523196 tid3868 [IFO,App] at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
2014-06-30T18:52:47.679412 tid3868 [IFO,App] Plugin command: Acquire SPIM image
2014-06-30T18:52:47.679412 tid3868 [IFO,App] Uncaught exception in AWT/Swing event dispatch thread:
2014-06-30T18:52:47.679412 tid3868 [IFO,App] java.lang.NullPointerException
2014-06-30T18:52:47.679412 tid3868 [IFO,App] at spim.SPIMAcquisition.updateUI(SPIMAcquisition.java:1175)
2014-06-30T18:52:47.679412 tid3868 [IFO,App] at spim.SPIMAcquisition.configurationChanged(SPIMAcquisition.java:307)
2014-06-30T18:52:47.679412 tid3868 [IFO,App] at spim.SPIMAcquisition.show(SPIMAcquisition.java:222)
2014-06-30T18:52:47.679412 tid3868 [IFO,App] at org.micromanager.MMStudioMainFrame.displayPlugin(MMStudioMainFrame.java:2755)
2014-06-30T18:52:47.679412 tid3868 [IFO,App] at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:157)
2014-06-30T18:52:47.679412 tid3868 [IFO,App] at org.micromanager.MMStudioMainFrame$49.run(MMStudioMainFrame.java:2720)
2014-06-30T18:52:47.679412 tid3868 [IFO,App] at org.micromanager.utils.GUIUtils$3.actionPerformed(GUIUtils.java:303)
2014-06-30T18:52:47.679412 tid3868 [IFO,App] at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:1995)
2014-06-30T18:52:47.679412 tid3868 [IFO,App] at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2318)
2014-06-30T18:52:47.679412 tid3868 [IFO,App] at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:387)
2014-06-30T18:52:47.679412 tid3868 [IFO,App] at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:242)
2014-06-30T18:52:47.679412 tid3868 [IFO,App] at javax.swing.AbstractButton.doClick(AbstractButton.java:357)
2014-06-30T18:52:47.679412 tid3868 [IFO,App] at javax.swing.plaf.basic.BasicMenuItemUI.doClick(BasicMenuItemUI.java:809)
2014-06-30T18:52:47.679412 tid3868 [IFO,App] at javax.swing.plaf.basic.BasicMenuItemUI$Handler.mouseReleased(BasicMenuItemUI.java:850)
2014-06-30T18:52:47.679412 tid3868 [IFO,App] at java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:272)
2014-06-30T18:52:47.679412 tid3868 [IFO,App] at java.awt.Component.processMouseEvent(Component.java:6289)
2014-06-30T18:52:47.679412 tid3868 [IFO,App] at javax.swing.JComponent.processMouseEvent(JComponent.java:3267)
2014-06-30T18:52:47.679412 tid3868 [IFO,App] at java.awt.Component.processEvent(Component.java:6054)
2014-06-30T18:52:47.679412 tid3868 [IFO,App] at java.awt.Container.processEvent(Container.java:2041)
2014-06-30T18:52:47.679412 tid3868 [IFO,App] at java.awt.Component.dispatchEventImpl(Component.java:4652)
2014-06-30T18:52:47.679412 tid3868 [IFO,App] at java.awt.Container.dispatchEventImpl(Container.java:2099)
2014-06-30T18:52:47.679412 tid3868 [IFO,App] at java.awt.Component.dispatchEvent(Component.java:4482)
2014-06-30T18:52:47.679412 tid3868 [IFO,App] at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4577)
2014-06-30T18:52:47.679412 tid3868 [IFO,App] at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4238)
2014-06-30T18:52:47.679412 tid3868 [IFO,App] at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4168)
2014-06-30T18:52:47.679412 tid3868 [IFO,App] at java.awt.Container.dispatchEventImpl(Container.java:2085)
2014-06-30T18:52:47.679412 tid3868 [IFO,App] at java.awt.Window.dispatchEventImpl(Window.java:2478)
2014-06-30T18:52:47.679412 tid3868 [IFO,App] at java.awt.Component.dispatchEvent(Component.java:4482)
2014-06-30T18:52:47.679412 tid3868 [IFO,App] at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:644)
2014-06-30T18:52:47.679412 tid3868 [IFO,App] at java.awt.EventQueue.access$000(EventQueue.java:85)
2014-06-30T18:52:47.679412 tid3868 [IFO,App] at java.awt.EventQueue$1.run(EventQueue.java:603)
2014-06-30T18:52:47.679412 tid3868 [IFO,App] at java.awt.EventQueue$1.run(EventQueue.java:601)
2014-06-30T18:52:47.679412 tid3868 [IFO,App] at java.security.AccessController.doPrivileged(Native Method)
2014-06-30T18:52:47.679412 tid3868 [IFO,App] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
2014-06-30T18:52:47.679412 tid3868 [IFO,App] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
2014-06-30T18:52:47.680412 tid3868 [IFO,App] at java.awt.EventQueue$2.run(EventQueue.java:617)
2014-06-30T18:52:47.680412 tid3868 [IFO,App] at java.awt.EventQueue$2.run(EventQueue.java:615)
2014-06-30T18:52:47.680412 tid3868 [IFO,App] at java.security.AccessController.doPrivileged(Native Method)
2014-06-30T18:52:47.680412 tid3868 [IFO,App] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
2014-06-30T18:52:47.680412 tid3868 [IFO,App] at java.awt.EventQueue.dispatchEvent(EventQueue.java:614)
2014-06-30T18:52:47.680412 tid3868 [IFO,App] at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269)
2014-06-30T18:52:47.680412 tid3868 [IFO,App] at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184)
2014-06-30T18:52:47.680412 tid3868 [IFO,App] at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174)
2014-06-30T18:52:47.680412 tid3868 [IFO,App] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169)
2014-06-30T18:52:47.680412 tid3868 [IFO,App] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161)
2014-06-30T18:52:47.680412 tid3868 [IFO,App] at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
2014-06-30T18:53:00.489693 tid3868 [IFO,App] Stop called in LivemodeTimer, true
2014-06-30T18:53:00.649709 tid3868 [IFO,App] Uncaught exception in AWT/Swing event dispatch thread:
2014-06-30T18:53:00.649709 tid3868 [IFO,App] java.lang.NullPointerException
2014-06-30T18:53:00.649709 tid3868 [IFO,App] at spim.SPIMAcquisition.dispose(SPIMAcquisition.java:192)
2014-06-30T18:53:00.649709 tid3868 [IFO,App] at org.micromanager.PluginLoader.disposePlugins(PluginLoader.java:351)
2014-06-30T18:53:00.649709 tid3868 [IFO,App] at org.micromanager.MMStudioMainFrame.cleanupOnClose(MMStudioMainFrame.java:2941)
2014-06-30T18:53:00.649709 tid3868 [IFO,App] at org.micromanager.MMStudioMainFrame.closeSequence(MMStudioMainFrame.java:3027)
2014-06-30T18:53:00.649709 tid3868 [IFO,App] at org.micromanager.MMStudioMainFrame$1.windowClosing(MMStudioMainFrame.java:457)
2014-06-30T18:53:00.649709 tid3868 [IFO,App] at java.awt.AWTEventMulticaster.windowClosing(AWTEventMulticaster.java:332)
2014-06-30T18:53:00.649709 tid3868 [IFO,App] at java.awt.Window.processWindowEvent(Window.java:1865)
2014-06-30T18:53:00.649709 tid3868 [IFO,App] at javax.swing.JFrame.processWindowEvent(JFrame.java:274)
2014-06-30T18:53:00.649709 tid3868 [IFO,App] at java.awt.Window.processEvent(Window.java:1823)
2014-06-30T18:53:00.649709 tid3868 [IFO,App] at java.awt.Component.dispatchEventImpl(Component.java:4652)
2014-06-30T18:53:00.649709 tid3868 [IFO,App] at java.awt.Container.dispatchEventImpl(Container.java:2099)
2014-06-30T18:53:00.649709 tid3868 [IFO,App] at java.awt.Window.dispatchEventImpl(Window.java:2478)
2014-06-30T18:53:00.649709 tid3868 [IFO,App] at java.awt.Component.dispatchEvent(Component.java:4482)
2014-06-30T18:53:00.649709 tid3868 [IFO,App] at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:644)
2014-06-30T18:53:00.649709 tid3868 [IFO,App] at java.awt.EventQueue.access$000(EventQueue.java:85)
2014-06-30T18:53:00.649709 tid3868 [IFO,App] at java.awt.EventQueue$1.run(EventQueue.java:603)
2014-06-30T18:53:00.649709 tid3868 [IFO,App] at java.awt.EventQueue$1.run(EventQueue.java:601)
2014-06-30T18:53:00.649709 tid3868 [IFO,App] at java.security.AccessController.doPrivileged(Native Method)
2014-06-30T18:53:00.649709 tid3868 [IFO,App] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
2014-06-30T18:53:00.649709 tid3868 [IFO,App] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
2014-06-30T18:53:00.649709 tid3868 [IFO,App] at java.awt.EventQueue$2.run(EventQueue.java:617)
2014-06-30T18:53:00.649709 tid3868 [IFO,App] at java.awt.EventQueue$2.run(EventQueue.java:615)
2014-06-30T18:53:00.649709 tid3868 [IFO,App] at java.security.AccessController.doPrivileged(Native Method)
2014-06-30T18:53:00.649709 tid3868 [IFO,App] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
2014-06-30T18:53:00.649709 tid3868 [IFO,App] at java.awt.EventQueue.dispatchEvent(EventQueue.java:614)
2014-06-30T18:53:00.649709 tid3868 [IFO,App] at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269)
2014-06-30T18:53:00.649709 tid3868 [IFO,App] at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184)
2014-06-30T18:53:00.649709 tid3868 [IFO,App] at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174)
2014-06-30T18:53:00.649709 tid3868 [IFO,App] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169)
2014-06-30T18:53:00.649709 tid3868 [IFO,App] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161)
2014-06-30T18:53:00.649709 tid3868 [IFO,App] at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
2014-06-30T18:53:01.705814 tid3868 [IFO,App] Stop called in LivemodeTimer, true
2014-06-30T18:53:01.705814 tid3868 [IFO,dev:Camera-1] PVCAM API error: "C2_PVCAM_NOT_INITED The PVCAM library was never initialized", code: 21
[ ] In file: PVCAMUniversal.cpp, line: 654, pl_cam_close
2014-06-30T18:53:01.908835 tid3868 [IFO,Core] Did unload all devices
2014-06-30T18:53:01.908835 tid3868 [IFO,Core] System reset
2014-06-30T18:53:01.910835 tid3868 [IFO,Core] Core session ended
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