[OpenSPIM] OpenSPIM Digest, Vol 14, Issue 20
Aurelia Honerkamp-Smith
aureliaomega at gmail.com
Tue Jul 1 09:16:38 CDT 2014
Hi again,
Thanks! I've replaced rsyntaxtextarea.jar. I can now configure all 3
components, although I still get the COM3 error messages. The shutter and
camera then seem to function, but I can't start the SPIM plugin to see if
the stage is working. I don't get an error message that says my setup is
invalid, the plugin just fails to start. I attach the configuration file
that I have just made, and a corelog showing an attempt to start the
plugin. My system info is:
--------------- S Y S T E M ---------------
OS: Windows 7 Build 7601 Service Pack 1
CPU:total 12 (6 cores per cpu, 2 threads per core) family 6 model 45
stepping 7, cmov, cx8, fxsr, mmx, sse, sse2, sse3, ssse3, sse4.1, sse4.2,
popcnt, ht
Memory: 4k page, physical 66506940k(61696496k free), swap
133012024k(127977948k free)
vm_info: Java HotSpot(TM) Client VM (19.1-b02) for windows-x86 JRE
(1.6.0_24-b07), built on Feb 2 2011 17:44:41 by "java_re" with MS VC++ 7.1
(VS2003)
Is that the system information you need?
On Mon, Jun 30, 2014 at 7:37 PM, Luke Stuyvenberg <stuyvenberg at wisc.edu>
wrote:
> Hi,
>
> One further thought -- the Java error at the top of the log file comes
> from a conflict in rsyntaxtextarea.jar (some e-mails on the MM mailing list
> discuss this issue, and we're working on porting Fiji/IJ2 to a newer
> version of the jar) -- I expected that having these in conflict would only
> disable the Micro-Manager script editor, but some testing suggests it might
> be more disruptive than that. Another fix you can try without waiting on
> me: From vanilla MM, copy: "plugins/Micro-Manager/rsyntaxtextarea.jar" ->
> (in OpenSPIM.app) "jars/rsyntaxtextarea.jar"; then, move, rename, or delete
> "jars/rsyntaxtextarea-2.0.4.1.jar".
>
>
> Thanks again,
> Luke
>
> On 06/30/14, Luke Stuyvenberg wrote:
> > Hi Aurelia,
> >
> > Could you attach your configuration file, and report your system specs
> (OS version/architecture) as well? The core log certainly seems to suggest
> it is attempting to load COM3 multiple times (it also seems to reset the
> serial port properties with each stage loaded from PicardStage), but short
> of that, I'm still not entirely certain what's going on. If the 24 June
> device adapters weren't correct, they probably wouldn't load at all, so
> presumably you've already copied all the right DLLs. (SerialManager and
> ThorlabsSC10 are self-contained, so just those files should be enough to
> run those devices; PVCAM has an external DLL, but your core log suggests
> the camera initializes without a problem.)
> >
> >
> > Thanks,
> > Luke
> >
> > On 06/30/14, Aurelia Honerkamp-Smith wrote:
> > > Sorry, I meant to also say that I can't load individual
> components, I get the same error messages about COM3. The only
> configuration I can actually complete is the shutter on its own, but it
> doesn't function.
> > >
> > >
> > >
> > >
> > > On Mon, Jun 30, 2014 at 6:55 PM, Aurelia Honerkamp-Smith <
> aureliaomega at gmail.com(javascript:main.compose()> wrote:
> > >
> > > > Hi!,
> > > >
> > > > With the SerialManager dll from June 24, I get the same error
> messages but entire system doesn't crash, it seems to be an
> improvement! New core log is attached again.
> > > >
> > > > Thanks again!
> > > > Aurelia
> > > >
> > > >
> > > >
> > > >
> > > > On Mon, Jun 30, 2014 at 6:01 PM, Luke Stuyvenberg <
> stuyvenberg at wisc.edu(javascript:main.compose()> wrote:
> > > >
> > > > > Hi Aurelia,
> > > > >
> > > > > On 06/30/14, Aurelia Honerkamp-Smith wrote:
> > > > > > Thank you! I am still having a problem, probably because I'm
> using a nonstandard setup. There seems to be a conflict in loading my
> camera (a PVCam one) and the shutter I use to block the laser (Thorlabs
> SC10); when I try to configure, I get a message "the specified label COM3
> is already in use" before anything has been configured, and then several
> times after I load both, one that says "Line8: device, COM3, serialmanager,
> COM3." The shutter should be on COM3 but not the camera, and I don't
> run into this conflict when I load both shutter and camera in the vanilla
> MM from 24 June. I attach a core log showing an attempt to load shutter and
> camera.
> > > > >
> > > > >
> > > > >
> > > > > Do the devices work individually in OpenSPIM? i.e. if only one is
> loaded, do you ever get that message? It sounds like a problem with the
> SerialManager, a device adapter which I hadn't updated -- you might try
> pulling mmgr_dal_SerialManager.dll from the 24 June nightly build. I'll
> also be looking into this.
> > > > >
> > > > >
> > > > > On 06/30/14, Aurelia Honerkamp-Smith wrote:
> > > > > > The Picard stage now appears in the list of available hardware,
> but when I try to load all three the computer bluescreens.
> > > > >
> > > > >
> > > > >
> > > > > Load all three devices (camera, shutter, stage), or load all three
> stages? Does it bluescreen reliably? (I've not seen/heard of this
> happening before...)
> > > > >
> > > > >
> > > > > I'll let you know what I work out. Thanks again!
> > > > > Luke
> > > > >
> > > > >
> > > > > On 06/30/14, Aurelia Honerkamp-Smith wrote:
> > > > > > Hi Luke,
> > > > > >
> > > > > >
> > > > >
> > > > > > Thank you! I am still having a problem, probably because I'm
> using a nonstandard setup. There seems to be a conflict in loading my
> camera (a PVCam one) and the shutter I use to block the laser (Thorlabs
> SC10); when I try to configure, I get a message "the specified label COM3
> is already in use" before anything has been configured, and then several
> times after I load both, one that says "Line8: device, COM3, serialmanager,
> COM3." The shutter should be on COM3 but not the camera, and I don't
> run into this conflict when I load both shutter and camera in the vanilla
> MM from 24 June. I attach a core log showing an attempt to load shutter and
> camera. The Picard stage now appears in the list of available hardware, but
> when I try to load all three the computer bluescreens.
> > > > > >
> > > > > >
> > > > > > Thanks again,
> > > > > > Aurelia
> > > > > >
> > > > > >
> > > > > >
> > > > > > On Mon, Jun 30, 2014 at 3:03 PM, Luke Stuyvenberg <
> openspim at openspim.org(javascript:main.compose() <stuyvenberg at wisc.edu(javascript:main.compose()')"
> target="1">stuyvenberg at wisc.edu(javascript:main.compose()> wrote:
> > > > > >
> > > > > > > Hi Aurelia,
> > > > > > >
> > > > >
> > > > > > > Sorry about that; it seems a lot more had changed than I had
> expected. I've updated the update site again, with a number of changes
> (new MMCore, new versions of the device adapters). It tested okay on my
> virtual machine, but if there's still a problem, please let me know. If
> you run into other device adapter problems (i.e. not with PicardStage), try
> getting updated device adapter versions from the nightly build as of 24
> June or so.
> > > > > > >
> > > > > > >
> > > > > > > Thanks!
> > > > > > > Luke
> > > > > > >
> > > > > > > On 06/29/14, Aurelia Honerkamp-Smith wrote:
> > > > > > > > Hello,
> > > > > > > >
> > > > > > > > I am afraid that after updating to the newest PicardStage
> dll, my previous configuration is unable to load the stage. I get an error
> message:
> > > > > > > >
> > > > > > > > Line 8: Device,Picard Twister,PicardStage,Picard Twister
> > > > > > > > Failed to load device adapter "PicardStage" from
> "C:\Users\ah659\Desktop\OPENSP~1\OpenSPIM.app\mm\win32\mmgr_dal_PicardStage.dll"
> > > > > > > >
> > > > > > > > Line 9: Device,Picard Z Stage,PicardStage,Picard Z Stage
> > > > > > > > Failed to load device adapter "PicardStage" from
> "C:\Users\ah659\Desktop\OPENSP~1\OpenSPIM.app\mm\win32\mmgr_dal_PicardStage.dll"
> > > > > > > >
> > > > > > > > Line 10: Device,Picard XY Stage,PicardStage,Picard XY Stage
> > > > > > > > Failed to load device adapter "PicardStage" from
> "C:\Users\ah659\Desktop\OPENSP~1\OpenSPIM.app\mm\win32\mmgr_dal_PicardStage.dll"
> > > > > > > >
> > > > > > > > Line 22: Property,Picard Twister,Serial Number,60
> > > > > > > > No device with label "Picard Twister"
> > > > > > > >
> > > > > > > > Line 23: Property,Picard Z Stage,Serial Number,181
> > > > > > > > No device with label "Picard Z Stage"
> > > > > > > >
> > > > > > > > Line 24: Property,Picard XY Stage,Serial Number (X),182
> > > > > > > > No device with label "Picard XY Stage"
> > > > > > > >
> > > > > > > > Line 25: Property,Picard XY Stage,Serial Number (Y),180
> > > > > > > > No device with label "Picard XY Stage"
> > > > > > > >
> > > > > > > > Line 26: Property,Picard XY Stage,X-Max,8000
> > > > > > > > No device with label "Picard XY Stage"
> > > > > > > >
> > > > > > > > Line 27: Property,Picard XY Stage,X-Min,1
> > > > > > > > No device with label "Picard XY Stage"
> > > > > > > >
> > > > > > > > Line 28: Property,Picard XY Stage,Y-Max,8000
> > > > > > > > No device with label "Picard XY Stage"
> > > > > > > >
> > > > > > > > Line 29: Property,Picard XY Stage,Y-Min,1
> > > > > > > > No device with label "Picard XY Stage"
> > > > > > > >
> > > > > > > > Line 44: Property,Core,Focus,Picard Z Stage
> > > > > > > > Cannot set Core property Focus to invalid value "Picard Z
> Stage"
> > > > > > > >
> > > > > > > >
> > > > > > >
> > > > > > >
> > > > > > > > I can still load the camera and my shutter. The Picard Stage
> now appears unavailable in the hardware configuration wizard. I am also
> using 32-bit Fiji on a 64-bit machine, but haven't had trouble loading
> the stage before (it appeared to work normally, with the exception of the
> occasional communication delay that I mentioned earlier). I attach a core
> log.
> > > > > > > >
> > > > > > > >
> > > > > > > >
> > > > > > > >
> > > > > > > >
> > > > >
> > > > >
> > > > > > > > On Sat, Jun 28, 2014 at 6:00 PM, <
> http://openspim.org/mailman/listinfo/openspim(java_script:main.compose('new(java_script:main.compose('new(http://openspim.org/mailman/listinfo/openspim(java_script:main.compose('new(java_script:main.compose('new)',
> 't=openspim at openspim.org(javascript:main.compose()> <
> openspim-request at openspim.org(javascript:main.compose() <
> openspim-request at openspim.org(javascript:main.compose()>')"
> target="1">openspim-request at openspim.org(javascript:main.compose() <
> openspim-request at openspim.org(javascript:main.compose()>> wrote:
> > > > > > > >
> > > > > > > > > Send OpenSPIM mailing list submissions to
> > > > > > >
> > > > > > > > > > >
> > > > >
> > > > > > > > > To subscribe or unsubscribe via the World Wide Web, visit
> > > > > > >
> > > > > > > > > <a href=)
> > > > > > > > > or, via email, send a message with subject or body
> 'help' to
> > > > >
> > > > > > > > > openspim-request at openspim.org(javascript:main.compose() <
> openspim-request at openspim.org(javascript:main.compose()> <
> openspim-request at openspim.org(javascript:main.compose() <
> openspim-request at openspim.org(javascript:main.compose()>>
> > > > > > > > >
> > > > > > > > > You can reach the person managing the list at
> > > > > > >
> > > > >
> > > > > > > > > openspim-owner at openspim.org(javascript:main.compose() <
> openspim-owner at openspim.org(javascript:main.compose()> <
> openspim-owner at openspim.org(javascript:main.compose() <
> openspim-owner at openspim.org(javascript:main.compose()>>
> > > > > > > > >
> > > > > > > > > When replying, please edit your Subject line so it is more
> specific
> > > > > > > > > than "Re: Contents of OpenSPIM digest..."
> > > > > > > > >
> > > > > > > > >
> > > > > > >
> > > > > > > > > Today's Topics:
> > > > > > > > >
> > > > > > > > > 1. Re: Problems with OpenSPIM system (Ke Li)
> > > > > > > > >
> > > > > > > > >
> > > > > > > > >
> ----------------------------------------------------------------------
> > > > > > > > >
> > > > > > > > > Message: 1
> > > > > > > > > Date: Fri, 27 Jun 2014 22:35:42 -0400
> > > > > > >
> > > > >
> > > > > > > > > From: Ke Li <tianlankeke at gmail.com(javascript:main.compose()
> <tianlankeke at gmail.com(javascript:main.compose()> <tianlankeke at gmail.com(javascript:main.compose()
> <tianlankeke at gmail.com(javascript:main.compose()>>>
> > > > > > > > > To: Kieran Short <kieran.short at gmail.com(javascript:main.compose()
> <kieran.short at gmail.com(javascript:main.compose()> <kieran.short at gmail.com(javascript:main.compose()
> <kieran.short at gmail.com(javascript:main.compose()>>>
> > > > > > > > > Cc: openspim at openspim.org(javascript:main.compose() <
> openspim at openspim.org(javascript:main.compose()> <openspim at openspim.org(javascript:main.compose()
> <openspim at openspim.org(javascript:main.compose()>>
> > > > > > > > > Subject: Re: [OpenSPIM] Problems with OpenSPIM system
> > > > > > > > > Message-ID:
> > > > > > >
> > > > >
> > > > > > > > > <
> CANQL1FuGbrN-Sm4v+W4utYF1hQTVW_C__xYaguRgf3dEJ3wGKA at mail.gmail.com(javascript:main.compose()
> <CANQL1FuGbrN-Sm4v+W4utYF1hQTVW_C__xYaguRgf3dEJ3wGKA at mail.gmail.com(javascript:main.compose()>
> <CANQL1FuGbrN-Sm4v+W4utYF1hQTVW_C__xYaguRgf3dEJ3wGKA at mail.gmail.com(javascript:main.compose()
> <CANQL1FuGbrN-Sm4v+W4utYF1hQTVW_C__xYaguRgf3dEJ3wGKA at mail.gmail.com
> (javascript:main.compose()>>>
> > > > > > > > > Content-Type: text/plain; charset="utf-8"
> > > > > > > > >
> > > > > > > > > Hi Kieran,
> > > > > > > > >
> > > > > > > > > Thanks for your detailed info. The 4D stage can be
> controlled normally by
> > > > > > >
> > > > > > > > > the software from Picard in my system. While I just
> can't add the Z stage
> > > > > > > > > when I try to create the hardware configuration wizard by
> micro-manager. So
> > > > > > > > > there is no place I can put the serial number of the Z
> stage in. (I can add
> > > > > > > > > XY stage and the twister normally and change -1 into the
> correct serial
> > > > > > > > > number of the XY stage).
> > > > > > > > >
> > > > > > > > > I can also reproduce the problem exactly as what Mark did
> and encountered
> > > > > > > > > (From Mark: I can reproduce the problem: with no Picard
> hardware connected
> > > > > > > > > to the computer, no configuration dialog for the
> pre-initialization
> > > > > > > > > settings (including the serial number) is displayed in the
> hardware
> > > > > > > > > configuration
> > > > > > > > > wizard. This is the case for the Twister and Z stage, but
> not the XY stage
> > > > > > > > > (at least on my computer).)
> > > > > > > > >
> > > > > > > > > Thanks,
> > > > > > > > > Ke
> > > > > > > > >
> > > > > > > > > Ke Li
> > > > > > > > > Research Assistant
> > > > > > > > > Biomedical Engineering
> > > > > > > > > Johns Hopkins University
> > > > > > >
> > > > >
> > > > > > > > > Phone: 410-934-9802(tel:410-934-9802)(tel:410-934-9802
> (tel:410-934-9802))(tel:410-934-9802(tel:410-934-9802)(tel:410-934-9802
> (tel:410-934-9802)))
> > > > > > > > > Email: kli26 at jhu.edu(javascript:main.compose() <
> kli26 at jhu.edu(javascript:main.compose()> <kli26 at jhu.edu(javascript:main.compose()
> <kli26 at jhu.edu(javascript:main.compose()>>
> > > > > > > > >
> > > > > > > > >
> > > > > > > > > On Fri, Jun 27, 2014 at 6:49 PM, Kieran Short <
> kieran.short at gmail.com(javascript:main.compose() <kieran.short at gmail.com(javascript:main.compose()>
> <kieran.short at gmail.com(javascript:main.compose() <kieran.short at gmail.com
> (javascript:main.compose()>>>
> > > > > > > > > wrote:
> > > > > > > > >
> > > > > > > > > > Hi Ke,
> > > > > > > > > >
> > > > > > > > > > You still can add the seral number to the Z in the Picard
> > > > > > > > > > application/program. This is totally independent of
> micromanager.
> > > > > > > > > >
> > > > > > > > > > The other thing is, the 4D stage axes are labeled with
> stickers which have
> > > > > > > > > > 2 bits of info . 1st is stage name and the other is the
> serial number. The
> > > > > > >
> > > > > > > > > > stage name doesn't necessarily represent what you
> think it does. Our "Z"
> > > > > > > > > > actually translates the stage toward and away from the
> detection objective!
> > > > > > >
> > > > > > > > > > That doesn't really matter though, I see Z as just a
> name that doesn't
> > > > > > > > > > truly reflect its function. It still works fine.
> > > > > > > > > >
> > > > > > > > > > Once you enter in the correct serial number in the
> Picard application the
> > > > > > > > > > indicators for the stage communication in the software
> should turn from red
> > > > > > > > > > to green.
> > > > > > > > > >
> > > > > > > > > > The picard software is*very* strict about this serial
> number setting. I
> > > > > > > > > > could use just about any numbers and micromanager worked
> -- but this really
> > > > > > > > > > wont.
> > > > > > > > > > My feeling is that if you at least have picards app
> working you will know
> > > > > > > > > > if its a "driver" problem or not.
> > > > > > > > > >
> > > > > > >
> > > > > > > > > > It'll make Luke's job a lot easier if this is
> done. Have you already done
> > > > > > > > > > this and is there communication between the 4d stage and
> its own software
> > > > > > > > > > once you have entered tge correct serial numbers?
> > > > > > > > > >
> > > > > > > > > > Cheers Kieran
> > > > > > >
> > > > >
> > > > > > > > > > On 28/06/2014 8:17 AM, "Ke Li" <tianlankeke at gmail.com(javascript:main.compose()
> <tianlankeke at gmail.com(javascript:main.compose()> <tianlankeke at gmail.com(javascript:main.compose()
> <tianlankeke at gmail.com(javascript:main.compose()>>> wrote:
> > > > > > > > > >
> > > > > > > > > >> Hi Luke,
> > > > > > > > > >>
> > > > > > > > > >> Thanks so much. Could you please send the link of the
> changed version to
> > > > > > > > > >> me? And since my system is 64-bit, how can I solve the
> Z stage problem (no
> > > > > > >
> > > > > > > > > >> field to change the serial number since I can't add
> the Z stage first)?
> > > > > > > > > >>
> > > > > > > > > >> Thanks,
> > > > > > > > > >> Ke
> > > > > > > > > >>
> > > > > > > > > >> Ke Li
> > > > > > > > > >> Research Assistant
> > > > > > > > > >> Biomedical Engineering
> > > > > > > > > >> Johns Hopkins University
> > > > > > >
> > > > >
> > > > > > > > > >> Phone: 410-934-9802(tel:410-934-9802)(tel:410-934-9802
> (tel:410-934-9802
> ))(tel:410-934-9802(tel:410-934-9802)(tel:410-934-9802(tel:410-934-9802)))
> > > > > > > > > >> Email: kli26 at jhu.edu(javascript:main.compose() <
> kli26 at jhu.edu(javascript:main.compose()> <kli26 at jhu.edu(javascript:main.compose()
> <kli26 at jhu.edu(javascript:main.compose()>>
> > > > > > > > > >>
> > > > > > > > > >>
> > > > > > > > > >> On Fri, Jun 27, 2014 at 2:55 PM, Luke Stuyvenberg <
> stuyvenberg at wisc.edu(javascript:main.compose() <stuyvenberg at wisc.edu(javascript:main.compose()>
> <stuyvenberg at wisc.edu(javascript:main.compose() <stuyvenberg at wisc.edu
> (javascript:main.compose()>>>
> > > > > > > > > >> wrote:
> > > > > > > > > >>
> > > > > > > > > >>> Hi everyone,
> > > > > > > > > >>>
> > > > > > > > > >>> On 06/27/14, Luke Stuyvenberg wrote:
> > > > > > >
> > > > > > > > > >>> > I'll report back after fixing/testing and
> committing/uploading the
> > > > > > > > > >>> device adapter.
> > > > > > > > > >>>
> > > > > > > > > >>>
> > > > > > > > > >>> And so here I am. I've committed the changes to
> SVN and uploaded the
> > > > > > > > > >>> 32-bit version of the DLL to the OpenSPIM update site.
> > > > > > > > > >>>
> > > > > > > > > >>>
> > > > > > > > > >>> Mark -- Following your suggestion, those lines were
> removed -- in
> > > > > > >
> > > > > > > > > >>> hindsight, it's not really the correct behavior,
> and the possible issue
> > > > > > > > > >>> with obtaining an invalid serial number shouldn't
> be common at all. Thanks!
> > > > > > > > > >>>
> > > > > > > > > >>>
> > > > > > > > > >>> Kieran -- I recently became aware of the homing
> problem; the stage
> > > > > > > > > >>> sometimes resets its internal location (when it loses
> power, perhaps?), so
> > > > > > > > > >>> over time it will be pushed away. The X/Y stage can be
> homed using the MM
> > > > > > > > > >>> Script Panel, running mmc.home("Picard XY Stage") --
> the Z stage has no
> > > > > > > > > >>> appropriate API call, so for the time being, there is
> a property "GoHome"
> > > > > > >
> > > > > > > > > >>> that will home that stage when set to 1. It's a
> workaround until I can
> > > > > > > > > >>> submit a more useful patch to the MM team (though, as
> an API change, that
> > > > > > > > > >>> may take a little while).
> > > > > > > > > >>>
> > > > > > > > > >>>
> > > > > > > > > >>> Ke -- Please let me know if there are any more
> problems; hope this helps!
> > > > > > > > > >>>
> > > > > > > > > >>>
> > > > > > > > > >>> Luke
> > > > > > > > > >>>
> > > > > > > > > >>>
> > > > > > > > > >>> On 06/27/14, Luke Stuyvenberg wrote:
> > > > > > > > > >>> > Hi Ke, Mark, Johannes,
> > > > > > > > > >>> >
> > > > > > > > > >>> >
> > > > > > > > > >>> > On 06/26/14, Mark Tsuchida wrote:
> > > > > > > > > >>> > > Johannes, I also found the cause:
> OnSerialGeneric() is calling the
> > > > > > > > > >>> > > Initialize() function, which fails. This happens
> before the Hardware
> > > > > > > > > >>> > > Wizard calls Initialize (actually, when the wizard
> is trying to get
> > > > > > > > > >>> > > the initial values of the pre-init properties), so
> the wizard has no
> > > > > > > > > >>> > > chance to display the configuration dialog.
> > > > > > > > > >>> > >
> > > > > > > > > >>> > > Simply taking out the calls to Initialize
> (PicardStage.cpp lines
> > > > > > >
> > > > > > > > > >>> > > 243-245, 258) seems to fix this, but I'm not
> sure if that is all that
> > > > > > > > > >>> > > needs to be done (since I don't have a Picard
> stage and cannot figure
> > > > > > > > > >>> > > out what the intent of calling Initialize() at
> this point was).
> > > > > > > > > >>> > > Johannes, can you take a look at this?
> > > > > > > > > >>> >
> > > > > > > > > >>> >
> > > > > > > > > >>> >
> > > > > > > > > >>> > The intent of the Initialize call was to test the
> serial number
> > > > > > >
> > > > > > > > > >>> received from the Pi-detector, but I didn't
> account for the possibility of
> > > > > > > > > >>> CPiDetector returning DEFAULT_SERIAL_UNKNOWN, which it
> does if the
> > > > > > >
> > > > > > > > > >>> requested device hadn't been found. I'm
> preparing a fix for this that I
> > > > > > > > > >>> will submit via SVN as soon as possible.
> > > > > > > > > >>> >
> > > > > > > > > >>> >
> > > > > > > > > >>> > The ultimate issue is this: The Pi-detector only
> tested serial numbers
> > > > > > >
> > > > > > > > > >>> up to 250. I've doubled this for now, but this is
> a stop-gap measure that
> > > > > > > > > >>> causes an ugly pause in the device adding process
> while it probes the
> > > > > > > > > >>> serial numbers; I will need to seek a different
> approach to detecting the
> > > > > > > > > >>> motors.
> > > > > > > > > >>> >
> > > > > > > > > >>> >
> > > > > > >
> > > > > > > > > >>> > I'll report back after fixing/testing and
> committing/uploading the
> > > > > > > > > >>> device adapter.
> > > > > > > > > >>> >
> > > > > > > > > >>> >
> > > > > > > > > >>> > Luke
> > > > > > > > > >>> >
> > > > > > > > > >>> >
> > > > > > > > > >>> > On 06/26/14, Mark Tsuchida wrote:
> > > > > > > > > >>> > > Hi Ke and Johannes,
> > > > > > > > > >>> > >
> > > > > > > > > >>> > > On Thu, Jun 26, 2014 at 11:57 AM, Mark Tsuchida <
> > > > > > >
> > > > >
> > > > >
> > > > > > > > > >>> marktsuchida at gmail.com(javascript:main.compose() <
> marktsuchida at gmail.com(javascript:main.compose()> <marktsuchida at gmail.com(javascript:main.compose()
> <marktsuchida at gmail.com(javascript:main.compose()>>> wrote:
> > > > > > > > > >>> > > > On Wed, Jun 25, 2014 at 10:27:54PM -0400, Ke Li
> wrote:
> > > > > > >
> > > > > > > > > >>> > > >> 1. I still can't add the Z stage when I
> create the hardware
> > > > > > > > > >>> configuration.
> > > > > > > > > >>> > > >> I tried both 64-bit and 32-bit Windows system,
> neither can work.
> > > > > > > > > >>> Since the
> > > > > > >
> > > > > > > > > >>> > > >> problem report doesn't give much info,
> I'm not sure whether there
> > > > > > > > > >>> are other
> > > > > > > > > >>> > > >> ways to solve this problem? And what possible
> reasons can cause
> > > > > > > > > >>> the
> > > > > > > > > >>> > > >> problem?
> > > > > > > > > >>> > > >
> > > > > > > > > >>> > > > Are you sure you have the correct serial number
> for the Z stage (as
> > > > > > > > > >>> > > > Johannes suggested)? In the problem report you
> sent us, it looked
> > > > > > > > > >>> like
> > > > > > > > > >>> > > > you had not set the serial number when adding
> the Z stage in the
> > > > > > > > > >>> > > > Hardware Configuration Wizard. This causes the
> device adapter to
> > > > > > > > > >>> use the
> > > > > > > > > >>> > > > serial number "-1", which always results in an
> error.
> > > > > > > > > >>> > > >
> > > > > > > > > >>> > > > Do you see a field to enter the serial number
> for the Z stage? If
> > > > > > > > > >>> you cannot
> > > > > > > > > >>> > > > get it to work even when entering the correct
> serial number, could
> > > > > > > > > >>> you try
> > > > > > > > > >>> > > > sending another Problem Report?
> > > > > > > > > >>> > >
> > > > > > >
> > > > > > > > > >>> > > Sorry, I hadn't seen your reply to Johannes
> that answered that
> > > > > > > > > >>> question of mine.
> > > > > > > > > >>> > >
> > > > > > > > > >>> > > I can reproduce the problem: with no Picard
> hardware connected to the
> > > > > > > > > >>> > > computer, no configuration dialog for the
> pre-initialization settings
> > > > > > > > > >>> > > (including the serial number) is displayed in the
> hardware
> > > > > > > > > >>> > > configuration wizard. This is the case for the
> Twister and Z stage,
> > > > > > > > > >>> > > but not the XY stage (at least on my computer).
> > > > > > > > > >>> > >
> > > > > > > > > >>> > > Johannes, I also found the cause:
> OnSerialGeneric() is calling the
> > > > > > > > > >>> > > Initialize() function, which fails. This happens
> before the Hardware
> > > > > > > > > >>> > > Wizard calls Initialize (actually, when the wizard
> is trying to get
> > > > > > > > > >>> > > the initial values of the pre-init properties), so
> the wizard has no
> > > > > > > > > >>> > > chance to display the configuration dialog.
> > > > > > > > > >>> > >
> > > > > > > > > >>> > > Simply taking out the calls to Initialize
> (PicardStage.cpp lines
> > > > > > >
> > > > > > > > > >>> > > 243-245, 258) seems to fix this, but I'm not
> sure if that is all that
> > > > > > > > > >>> > > needs to be done (since I don't have a Picard
> stage and cannot figure
> > > > > > > > > >>> > > out what the intent of calling Initialize() at
> this point was).
> > > > > > > > > >>> > > Johannes, can you take a look at this?
> > > > > > > > > >>> > >
> > > > > > > > > >>> > > Best,
> > > > > > > > > >>> > > Mark
> > > > > > > > > >>> > >
> > > > > > > > > >>> > > --
> > > > > > > > > >>> > > Mark Tsuchida
> > > > > > > > > >>> > > Micro-Manager Team (UCSF Vale Lab)
> > > > > > > > > >>> > >
> > > > > > > > > >>> > > _______________________________________________
> > > > > > > > > >>> > > OpenSPIM mailing list
> > > > > > >
> > > > >
> > > > >
> > > > > > > > > >>> > > OpenSPIM at openspim.org(javascript:main.compose() <
> OpenSPIM at openspim.org(javascript:main.compose()> <OpenSPIM at openspim.org(javascript:main.compose()
> <OpenSPIM at openspim.org(javascript:main.compose()>>
> > > > > > > > > >>> > > http://openspim.org/mailman/listinfo/openspim
> > > > > > > > > >>> >
> > > > > > > > > >>> > _______________________________________________
> > > > > > > > > >>> > OpenSPIM mailing list
> > > > > > >
> > > > >
> > > > > > > > > >>> > OpenSPIM at openspim.org(javascript:main.compose() <
> OpenSPIM at openspim.org(javascript:main.compose()> <OpenSPIM at openspim.org(javascript:main.compose()
> <OpenSPIM at openspim.org(javascript:main.compose()>>
> > > > > > > > > >>> > http://openspim.org/mailman/listinfo/openspim
> > > > > > > > > >>>
> > > > > > > > > >>
> > > > > > > > > >>
> > > > > > > > > -------------- next part --------------
> > > > > > > > > An HTML attachment was scrubbed...
> > > > > > > > > URL: <
> http://openspim.org/pipermail/openspim/attachments/20140627/6a368a1d/attachment-0001.html
> >
> > > > > > > > >
> > > > > > > > > ------------------------------
> > > > > > > > >
> > > > > > > > > _______________________________________________
> > > > > > > > > OpenSPIM mailing list
> > > > > > >
> > > > >
> > > > > > > > > OpenSPIM at openspim.org(javascript:main.compose() <
> OpenSPIM at openspim.org(javascript:main.compose()> <OpenSPIM at openspim.org(javascript:main.compose()
> <OpenSPIM at openspim.org(javascript:main.compose()>>
> > > > > > > > > http://openspim.org/mailman/listinfo/openspim
> > > > > > > > >
> > > > > > > > >
> > > > > > > > > End of OpenSPIM Digest, Vol 14, Issue 20
> > > > > > > > > ****************************************
> > > > > > > > >
> > > > > > >
> > > > > > >
> > > > > > >
> > > > >
> > > > >
> > > > >
> > > >
> > > >
> > > >
> > > >
> > > >
> > > >
> >
> > _______________________________________________
> > OpenSPIM mailing list
> > OpenSPIM at openspim.org
> > http://openspim.org/mailman/listinfo/openspim
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://openspim.org/pipermail/openspim/attachments/20140701/b628db61/attachment-0002.html>
-------------- next part --------------
2014-07-01T15:08:45.686234 tid3904 [IFO,LogManager] Enabled primary log file C:\Users\ah659\Desktop\OpenSPIM-20130131\OpenSPIM.app\CoreLogs\CoreLog20140701T150845_pid4864.txt
2014-07-01T15:08:45.686234 tid3904 [IFO,App] User: ah659
2014-07-01T15:08:45.686234 tid3904 [IFO,App] Host: invert
2014-07-01T15:08:45.686234 tid3904 [IFO,App] MM Studio version: 1.4.x dev
2014-07-01T15:08:45.686234 tid3904 [IFO,App] MMCore version 3.0.0
2014-07-01T15:08:45.686234 tid3904 [IFO,App] Device API version 60, Module API version 10
2014-07-01T15:08:45.686234 tid3904 [IFO,App] Operating System: Windows 7 (x86) 6.1
2014-07-01T15:08:45.686234 tid3904 [IFO,App] JVM: Java HotSpot(TM) Client VM, version 1.6.0_24, 32-bit
2014-07-01T15:08:45.808258 tid4724 [IFO,App] Attempting to install plugin spim.SPIMAcquisition
2014-07-01T15:08:45.824262 tid4724 [IFO,App] Attempting to install autofocus plugin Autofocus
2014-07-01T15:08:45.826262 tid4724 [IFO,App] Attempting to install autofocus plugin AutofocusDuo
2014-07-01T15:08:45.826262 tid4724 [IFO,App] Attempting to install autofocus plugin AutofocusTB
2014-07-01T15:08:45.827262 tid4724 [IFO,App] Attempting to install autofocus plugin OughtaFocus
2014-07-01T15:08:48.134724 tid3904 [IFO,Core] All devices unloaded.
2014-07-01T15:08:48.138724 tid3904 [IFO,Core] Device COM3 loaded from SerialManager and labeled as COM3
2014-07-01T15:08:48.138724 tid3904 [IFO,Core] Error occurred. Device MMCore::loadDevice. The specified label "COM3" is already in use
2014-07-01T15:08:48.140725 tid3904 [IFO,Core] Device Camera-1 loaded from PVCAM and labeled as Camera-1
2014-07-01T15:08:48.141725 tid3904 [IFO,Core] Device SC10 loaded from ThorlabsSC10 and labeled as SC10
2014-07-01T15:08:48.144726 tid3904 [IFO,Core] Device Picard Twister loaded from PicardStage and labeled as Picard Twister
2014-07-01T15:08:48.144726 tid3904 [IFO,Core] Device Picard Z Stage loaded from PicardStage and labeled as Picard Z Stage
2014-07-01T15:08:48.144726 tid3904 [IFO,Core] Device Picard XY Stage loaded from PicardStage and labeled as Picard XY Stage
2014-07-01T15:08:48.247746 tid3904 [IFO,Core] Starting initialization sequence for 6 devices...
2014-07-01T15:08:48.255748 tid3904 [IFO,Core] Device COM3 initialized.
2014-07-01T15:08:48.256748 tid3904 [IFO,dev:Camera-1] PVCAM VERSION: 3.0.3. Number of cameras detected: 1
2014-07-01T15:08:48.285754 tid3904 [IFO,dev:Camera-1] Building Speed Table
2014-07-01T15:08:48.404778 tid3904 [IFO,dev:Camera-1] Initializing Static Camera Properties
2014-07-01T15:08:48.416780 tid3904 [IFO,dev:Camera-1] Initializing Dynamic Camera Properties
2014-07-01T15:08:48.456788 tid3904 [IFO,dev:Camera-1] This Camera does not have EM Gain
2014-07-01T15:08:48.456788 tid3904 [IFO,dev:Camera-1] Frame Transfer mode not available
2014-07-01T15:08:48.505798 tid3904 [IFO,dev:Camera-1] Using PVCAM callbacks for frame acquisition
2014-07-01T15:08:48.506798 tid3904 [IFO,Core] Device Camera-1 set as default camera.
2014-07-01T15:08:48.506798 tid3904 [IFO,Core] Device Camera-1 initialized.
2014-07-01T15:08:48.556808 tid3904 [IFO,dev:SC10] THORLABS SC10 VERSION 1.07
2014-07-01T15:08:48.572811 tid3904 [IFO,Core] Device SC10 set as default shutter.
2014-07-01T15:08:48.572811 tid3904 [IFO,Core] Device SC10 initialized.
2014-07-01T15:08:48.594816 tid3904 [IFO,Core] Device Picard Twister initialized.
2014-07-01T15:08:48.618820 tid3904 [IFO,Core] Device Picard Z Stage initialized.
2014-07-01T15:08:48.630823 tid3904 [IFO,Core] Device Picard XY Stage set as default xyStage.
2014-07-01T15:08:48.630823 tid3904 [IFO,Core] Device Picard XY Stage initialized.
2014-07-01T15:08:48.631823 tid3904 [IFO,Core] Camera device set to Camera-1
2014-07-01T15:08:48.631823 tid3904 [IFO,Core] Focus device set to Picard Z Stage
2014-07-01T15:08:48.633823 tid3904 [IFO,App]
[ ] java.lang.Exception: Line 8: Device,COM3,SerialManager,COM3
[ ] The specified label "COM3" is already in use
[ ]
[ ] in Thread[AWT-EventQueue-0,6,main]
[ ] at mmcorej.MMCoreJJNI.CMMCore_loadSystemConfiguration(Native Method)
[ ] at mmcorej.CMMCore.loadSystemConfiguration(CMMCore.java:313)
[ ] at org.micromanager.MMStudioMainFrame.loadSystemConfiguration(MMStudioMainFrame.java:3151)
[ ] at org.micromanager.MMStudioMainFrame.access$2200(MMStudioMainFrame.java:157)
[ ] at org.micromanager.MMStudioMainFrame$1.windowOpened(MMStudioMainFrame.java:560)
[ ] at java.awt.AWTEventMulticaster.windowOpened(AWTEventMulticaster.java:322)
[ ] at java.awt.Window.processWindowEvent(Window.java:1862)
[ ] at javax.swing.JFrame.processWindowEvent(JFrame.java:274)
[ ] at java.awt.Window.processEvent(Window.java:1823)
[ ] at java.awt.Component.dispatchEventImpl(Component.java:4652)
[ ] at java.awt.Container.dispatchEventImpl(Container.java:2099)
[ ] at java.awt.Window.dispatchEventImpl(Window.java:2478)
[ ] at java.awt.Component.dispatchEvent(Component.java:4482)
[ ] at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:644)
[ ] at java.awt.EventQueue.access$000(EventQueue.java:85)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:603)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:601)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:617)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:615)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.awt.EventQueue.dispatchEvent(EventQueue.java:614)
[ ] at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269)
[ ] at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184)
[ ] at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161)
[ ] at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
2014-07-01T15:08:50.744245 tid3904 [IFO,dev:SC10] 0
2014-07-01T15:08:50.748246 tid3904 [IFO,Core] System state cache updated.
2014-07-01T15:08:50.778252 tid3904 [IFO,App] Startup script file (C:\Users\ah659\Desktop\OpenSPIM-20130131\OpenSPIM.app\MMStartup.bsh) not present.
2014-07-01T15:08:53.491795 tid3904 [IFO,dev:SC10] 0
2014-07-01T15:08:53.526802 tid3904 [IFO,dev:Camera-1] Started sequence on Camera-1, at 457542533 526802, with 2147483647 and 0 ms
2014-07-01T15:08:56.192335 tid3904 [IFO,App] Stop called in LivemodeTimer, true
2014-07-01T15:08:56.368370 tid3904 [IFO,dev:SC10] 1
2014-07-01T15:08:58.874871 tid3904 [IFO,dev:SC10] 0
2014-07-01T15:08:59.306958 tid3904 [IFO,dev:SC10] 0
2014-07-01T15:08:59.706037 tid3904 [IFO,dev:SC10] 1
2014-07-01T15:09:00.090114 tid3904 [IFO,dev:SC10] 0
2014-07-01T15:09:00.473191 tid3904 [IFO,dev:SC10] 1
2014-07-01T15:09:01.590414 tid3904 [IFO,dev:SC10] 0
2014-07-01T15:09:02.979692 tid3904 [IFO,dev:SC10] 0
2014-07-01T15:09:03.010698 tid3904 [IFO,dev:Camera-1] Started sequence on Camera-1, at 457542543 10698, with 2147483647 and 0 ms
2014-07-01T15:09:05.297155 tid3904 [IFO,App] Stop called in LivemodeTimer, true
2014-07-01T15:09:05.330162 tid3904 [IFO,dev:SC10] 1
2014-07-01T15:09:08.290754 tid3904 [IFO,App] Plugin command: Acquire SPIM image
2014-07-01T15:09:08.314759 tid3904 [IFO,Core] Resolution ID Uncalibrated: for device Core defined as Initialize=1
2014-07-01T15:09:08.314759 tid3904 [IFO,Core] Pixel size 1.000000 um set for resolution ID: Uncalibrated
2014-07-01T15:09:08.314759 tid3904 [IFO,Core] Starting initialization sequence for 6 devices...
2014-07-01T15:09:08.314759 tid3904 [IFO,Core] Device COM3 initialized.
2014-07-01T15:09:08.314759 tid3904 [IFO,dev:Camera-1] PVCAM VERSION: 3.0.3. Number of cameras detected: 1
2014-07-01T15:09:08.314759 tid3904 [IFO,dev:Camera-1] PVCAM API error: "C0_CAM_NAME_NOT_FOUND This is not a valid name for opening the camera", code: 14
[ ] In file: PVCAMUniversal.cpp, line: 325, pl_cam_open
2014-07-01T15:09:08.314759 tid3904 [IFO,Core] Error occurred. Device Camera-1. Error in device Camera-1: C0_CAM_NAME_NOT_FOUND This is not a valid name for opening the camera.
2014-07-01T15:09:08.314759 tid3904 [IFO,Core] Error occurred. Device setPixelSizeConfig. Device error encountered.
2014-07-01T15:09:08.314759 tid3904 [IFO,App] Couldn't define uncalibrated pixel size:
2014-07-01T15:09:08.315759 tid3904 [IFO,App] java.lang.Exception: Error in device Camera-1: C0_CAM_NAME_NOT_FOUND This is not a valid name for opening the camera.
[ ] at mmcorej.MMCoreJJNI.CMMCore_setPixelSizeConfig(Native Method)
[ ] at mmcorej.CMMCore.setPixelSizeConfig(CMMCore.java:777)
[ ] at spim.SPIMAcquisition.ensurePixelResolution(SPIMAcquisition.java:263)
[ ] at spim.SPIMAcquisition.show(SPIMAcquisition.java:220)
[ ] at org.micromanager.MMStudioMainFrame.displayPlugin(MMStudioMainFrame.java:2755)
[ ] at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:157)
[ ] at org.micromanager.MMStudioMainFrame$49.run(MMStudioMainFrame.java:2720)
[ ] at org.micromanager.utils.GUIUtils$3.actionPerformed(GUIUtils.java:303)
[ ] at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:1995)
[ ] at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2318)
[ ] at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:387)
[ ] at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:242)
[ ] at javax.swing.AbstractButton.doClick(AbstractButton.java:357)
[ ] at javax.swing.plaf.basic.BasicMenuItemUI.doClick(BasicMenuItemUI.java:809)
[ ] at javax.swing.plaf.basic.BasicMenuItemUI$Handler.mouseReleased(BasicMenuItemUI.java:850)
[ ] at java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:272)
[ ] at java.awt.Component.processMouseEvent(Component.java:6289)
[ ] at javax.swing.JComponent.processMouseEvent(JComponent.java:3267)
[ ] at java.awt.Component.processEvent(Component.java:6054)
[ ] at java.awt.Container.processEvent(Container.java:2041)
[ ] at java.awt.Component.dispatchEventImpl(Component.java:4652)
[ ] at java.awt.Container.dispatchEventImpl(Container.java:2099)
[ ] at java.awt.Component.dispatchEvent(Component.java:4482)
[ ] at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4577)
[ ] at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4238)
[ ] at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4168)
[ ] at java.awt.Container.dispatchEventImpl(Container.java:2085)
[ ] at java.awt.Window.dispatchEventImpl(Window.java:2478)
[ ] at java.awt.Component.dispatchEvent(Component.java:4482)
[ ] at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:644)
[ ] at java.awt.EventQueue.access$000(EventQueue.java:85)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:603)
[ ] at java.awt.EventQueue$1.run(EventQueue.java:601)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:617)
[ ] at java.awt.EventQueue$2.run(EventQueue.java:615)
[ ] at java.security.AccessController.doPrivileged(Native Method)
[ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
[ ] at java.awt.EventQueue.dispatchEvent(EventQueue.java:614)
[ ] at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269)
[ ] at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184)
[ ] at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169)
[ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161)
[ ] at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
2014-07-01T15:09:08.384773 tid3904 [IFO,App] Uncaught exception in AWT/Swing event dispatch thread:
2014-07-01T15:09:08.384773 tid3904 [IFO,App] java.lang.IllegalArgumentException: invalid range properties
2014-07-01T15:09:08.384773 tid3904 [IFO,App] at javax.swing.DefaultBoundedRangeModel.<init>(DefaultBoundedRangeModel.java:85)
2014-07-01T15:09:08.384773 tid3904 [IFO,App] at javax.swing.JSlider.<init>(JSlider.java:259)
2014-07-01T15:09:08.384773 tid3904 [IFO,App] at javax.swing.JSlider.<init>(JSlider.java:226)
2014-07-01T15:09:08.384773 tid3904 [IFO,App] at spim.SteppedSlider.<init>(SteppedSlider.java:63)
2014-07-01T15:09:08.385773 tid3904 [IFO,App] at spim.SPIMAcquisition$19.<init>(SPIMAcquisition.java:1042)
2014-07-01T15:09:08.385773 tid3904 [IFO,App] at spim.SPIMAcquisition.makeStageSlider(SPIMAcquisition.java:1042)
2014-07-01T15:09:08.385773 tid3904 [IFO,App] at spim.SPIMAcquisition.initUI(SPIMAcquisition.java:367)
2014-07-01T15:09:08.385773 tid3904 [IFO,App] at spim.SPIMAcquisition.show(SPIMAcquisition.java:221)
2014-07-01T15:09:08.385773 tid3904 [IFO,App] at org.micromanager.MMStudioMainFrame.displayPlugin(MMStudioMainFrame.java:2755)
2014-07-01T15:09:08.385773 tid3904 [IFO,App] at org.micromanager.MMStudioMainFrame.access$5800(MMStudioMainFrame.java:157)
2014-07-01T15:09:08.385773 tid3904 [IFO,App] at org.micromanager.MMStudioMainFrame$49.run(MMStudioMainFrame.java:2720)
2014-07-01T15:09:08.385773 tid3904 [IFO,App] at org.micromanager.utils.GUIUtils$3.actionPerformed(GUIUtils.java:303)
2014-07-01T15:09:08.385773 tid3904 [IFO,App] at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:1995)
2014-07-01T15:09:08.385773 tid3904 [IFO,App] at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2318)
2014-07-01T15:09:08.385773 tid3904 [IFO,App] at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:387)
2014-07-01T15:09:08.385773 tid3904 [IFO,App] at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:242)
2014-07-01T15:09:08.385773 tid3904 [IFO,App] at javax.swing.AbstractButton.doClick(AbstractButton.java:357)
2014-07-01T15:09:08.385773 tid3904 [IFO,App] at javax.swing.plaf.basic.BasicMenuItemUI.doClick(BasicMenuItemUI.java:809)
2014-07-01T15:09:08.385773 tid3904 [IFO,App] at javax.swing.plaf.basic.BasicMenuItemUI$Handler.mouseReleased(BasicMenuItemUI.java:850)
2014-07-01T15:09:08.385773 tid3904 [IFO,App] at java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:272)
2014-07-01T15:09:08.385773 tid3904 [IFO,App] at java.awt.Component.processMouseEvent(Component.java:6289)
2014-07-01T15:09:08.385773 tid3904 [IFO,App] at javax.swing.JComponent.processMouseEvent(JComponent.java:3267)
2014-07-01T15:09:08.385773 tid3904 [IFO,App] at java.awt.Component.processEvent(Component.java:6054)
2014-07-01T15:09:08.385773 tid3904 [IFO,App] at java.awt.Container.processEvent(Container.java:2041)
2014-07-01T15:09:08.385773 tid3904 [IFO,App] at java.awt.Component.dispatchEventImpl(Component.java:4652)
2014-07-01T15:09:08.385773 tid3904 [IFO,App] at java.awt.Container.dispatchEventImpl(Container.java:2099)
2014-07-01T15:09:08.385773 tid3904 [IFO,App] at java.awt.Component.dispatchEvent(Component.java:4482)
2014-07-01T15:09:08.385773 tid3904 [IFO,App] at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4577)
2014-07-01T15:09:08.385773 tid3904 [IFO,App] at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4238)
2014-07-01T15:09:08.385773 tid3904 [IFO,App] at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4168)
2014-07-01T15:09:08.385773 tid3904 [IFO,App] at java.awt.Container.dispatchEventImpl(Container.java:2085)
2014-07-01T15:09:08.385773 tid3904 [IFO,App] at java.awt.Window.dispatchEventImpl(Window.java:2478)
2014-07-01T15:09:08.385773 tid3904 [IFO,App] at java.awt.Component.dispatchEvent(Component.java:4482)
2014-07-01T15:09:08.385773 tid3904 [IFO,App] at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:644)
2014-07-01T15:09:08.385773 tid3904 [IFO,App] at java.awt.EventQueue.access$000(EventQueue.java:85)
2014-07-01T15:09:08.385773 tid3904 [IFO,App] at java.awt.EventQueue$1.run(EventQueue.java:603)
2014-07-01T15:09:08.385773 tid3904 [IFO,App] at java.awt.EventQueue$1.run(EventQueue.java:601)
2014-07-01T15:09:08.385773 tid3904 [IFO,App] at java.security.AccessController.doPrivileged(Native Method)
2014-07-01T15:09:08.385773 tid3904 [IFO,App] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
2014-07-01T15:09:08.385773 tid3904 [IFO,App] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
2014-07-01T15:09:08.385773 tid3904 [IFO,App] at java.awt.EventQueue$2.run(EventQueue.java:617)
2014-07-01T15:09:08.385773 tid3904 [IFO,App] at java.awt.EventQueue$2.run(EventQueue.java:615)
2014-07-01T15:09:08.385773 tid3904 [IFO,App] at java.security.AccessController.doPrivileged(Native Method)
2014-07-01T15:09:08.385773 tid3904 [IFO,App] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
2014-07-01T15:09:08.385773 tid3904 [IFO,App] at java.awt.EventQueue.dispatchEvent(EventQueue.java:614)
2014-07-01T15:09:08.385773 tid3904 [IFO,App] at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269)
2014-07-01T15:09:08.385773 tid3904 [IFO,App] at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184)
2014-07-01T15:09:08.385773 tid3904 [IFO,App] at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174)
2014-07-01T15:09:08.385773 tid3904 [IFO,App] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169)
2014-07-01T15:09:08.385773 tid3904 [IFO,App] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161)
2014-07-01T15:09:08.385773 tid3904 [IFO,App] at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
-------------- next part --------------
A non-text attachment was scrubbed...
Name: all_hardware3.cfg
Type: application/octet-stream
Size: 1714 bytes
Desc: not available
URL: <http://openspim.org/pipermail/openspim/attachments/20140701/b628db61/attachment-0002.obj>
More information about the OpenSPIM
mailing list