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<div>Hi Stephanie,</div>
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<div>Regarding your first question, you can use ClearVolume (http://imagej.net/ClearVolume). We originally had a version of the OpenSPIM acquisition plugin with ClearVolume directly integrated, but as ClearVolume is a Fiji plugin on its own now, we have to handle this in a different way. We’ll have an updated version of that ready soon(ish).</div>
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<div>Regarding your second question, Christopher Schmied created an updated and automated version of the workflow. The guide is available at http://imagej.net/Automated_workflow_for_parallel_Multiview_Reconstruction, with source code on GitHub: https://github.com/mpicbg-scicomp/snakemake-workflows</div>
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<div>I hope this is helpful for you!</div>
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<div>cheers!</div>
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<div>ulrik</div>
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<div>Ulrik Günther, Dipl.-Phys.<br>PhD Student<br>MOSAIC Group & Tomancak Lab, Center of Systems Biology Dresden</div>
<div>Max Planck Institute of Molecular Cell Biology and Genetics<br>Pfotenhauerstr. 108, D-01307 Dresden, Germany</div>
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