2016-12-20T15:22:33.740162 tid5404 [IFO,LogManager] Enabled primary log file C:\OpenSPIM-20150427\OpenSPIM.app\CoreLogs\CoreLog20161220T152233_pid2024.txt 2016-12-20T15:22:33.740162 tid5404 [IFO,LogManager] Switching primary log level from info to trace 2016-12-20T15:22:33.755762 tid5404 [IFO,LogManager] Switched primary log level from info to trace 2016-12-20T15:22:33.755762 tid5404 [IFO,App] EDTHangLogger: Started monitoring of EDT hangs [ ] [heartbeat timeout = 4500 ms, hang check interval = 1000 ms] 2016-12-20T15:22:33.755762 tid5404 [IFO,App] User: MPawlowska 2016-12-20T15:22:33.755762 tid5404 [IFO,App] Host: PC507-E2AA 2016-12-20T15:22:33.755762 tid5404 [IFO,App] MM Studio version: 1.4.23 20161219 2016-12-20T15:22:33.755762 tid5404 [IFO,App] MMCore version 8.4.0 2016-12-20T15:22:33.755762 tid5404 [IFO,App] Device API version 67, Module API version 10 2016-12-20T15:22:33.755762 tid5404 [IFO,App] Operating System: Windows 7 (amd64) 6.1 2016-12-20T15:22:33.755762 tid5404 [IFO,App] JVM: Java HotSpot(TM) 64-Bit Server VM, version 1.8.0_51, 64-bit 2016-12-20T15:22:33.755762 tid5404 [dbg,Core] Will set circular buffer size to 250 MB 2016-12-20T15:22:33.755762 tid5404 [dbg,Core] Did set circular buffer size to 250 MB 2016-12-20T15:22:33.818162 tid5556 [IFO,App] Added URL to system class loader: file:/C:/OpenSPIM-20150427/OpenSPIM.app/mmplugins/ 2016-12-20T15:22:33.818162 tid5556 [IFO,App] Added URL to system class loader: jar:file:C:\OpenSPIM-20150427\OpenSPIM.app\mmplugins\Big.jar!/ 2016-12-20T15:22:33.818162 tid5556 [IFO,App] Added URL to system class loader: jar:file:C:\OpenSPIM-20150427\OpenSPIM.app\mmplugins\DataBrowser.jar!/ 2016-12-20T15:22:34.161363 tid5556 [IFO,App] Added URL to system class loader: jar:file:C:\OpenSPIM-20150427\OpenSPIM.app\mmplugins\PixelCalibrator.jar!/ 2016-12-20T15:22:34.176963 tid5556 [IFO,App] Added URL to system class loader: jar:file:C:\OpenSPIM-20150427\OpenSPIM.app\mmplugins\Recall.jar!/ 2016-12-20T15:22:34.176963 tid5556 [IFO,App] Added URL to system class loader: jar:file:C:\OpenSPIM-20150427\OpenSPIM.app\mmplugins\SPIMAcquisition-1.0.1-SNAPSHOT.jar!/ 2016-12-20T15:22:34.317363 tid5556 [IFO,App] Installing plugin org.micromanager.browser.Data_Browser... 2016-12-20T15:22:34.317363 tid5556 [IFO,App] Error: Plugin [org.micromanager.browser.Data_Browser] has no menuName field 2016-12-20T15:22:34.317363 tid5556 [IFO,App] org.micromanager.browser.Data_Browser fails to implement static String tooltipDescription. 2016-12-20T15:22:34.317363 tid5556 [IFO,App] Installing plugin org.micromanager.pixelcalibrator.PixelCalibratorPlugin... 2016-12-20T15:22:34.317363 tid5556 [IFO,App] Installing plugin org.micromanager.recall.RecallPlugin... 2016-12-20T15:22:34.317363 tid5556 [IFO,App] Installing plugin spim.SPIMAcquisition... 2016-12-20T15:22:34.317363 tid5556 [IFO,App] Added URL to system class loader: file:/C:/OpenSPIM-20150427/OpenSPIM.app/mmplugins/Acquisition_Tools/ 2016-12-20T15:22:34.317363 tid5556 [IFO,App] Added URL to system class loader: jar:file:C:\OpenSPIM-20150427\OpenSPIM.app\mmplugins\Acquisition_Tools\AcquireMultipleRegions.jar!/ 2016-12-20T15:22:34.332963 tid5556 [IFO,App] Added URL to system class loader: jar:file:C:\OpenSPIM-20150427\OpenSPIM.app\mmplugins\Acquisition_Tools\Gaussian.jar!/ 2016-12-20T15:22:34.504563 tid5556 [IFO,App] Added URL to system class loader: jar:file:C:\OpenSPIM-20150427\OpenSPIM.app\mmplugins\Acquisition_Tools\HCS.jar!/ 2016-12-20T15:22:34.520163 tid5556 [IFO,App] Added URL to system class loader: jar:file:C:\OpenSPIM-20150427\OpenSPIM.app\mmplugins\Acquisition_Tools\IntelligentAcquisition.jar!/ 2016-12-20T15:22:34.551364 tid5556 [IFO,App] Added URL to system class loader: jar:file:C:\OpenSPIM-20150427\OpenSPIM.app\mmplugins\Acquisition_Tools\Magellan.jar!/ 2016-12-20T15:22:34.925764 tid5556 [IFO,App] Added URL to system class loader: jar:file:C:\OpenSPIM-20150427\OpenSPIM.app\mmplugins\Acquisition_Tools\MMTracker.jar!/ 2016-12-20T15:22:34.925764 tid5556 [IFO,App] Added URL to system class loader: jar:file:C:\OpenSPIM-20150427\OpenSPIM.app\mmplugins\Acquisition_Tools\PatternOverlay.jar!/ 2016-12-20T15:22:34.941364 tid5556 [IFO,App] Added URL to system class loader: jar:file:C:\OpenSPIM-20150427\OpenSPIM.app\mmplugins\Acquisition_Tools\SlideExplorer.jar!/ 2016-12-20T15:22:34.972564 tid5556 [IFO,App] Installing plugin org.micromanager.acquiremultipleregions.AcquireMultipleRegions... 2016-12-20T15:22:34.972564 tid5556 [IFO,App] Installing plugin GaussianTrack_... 2016-12-20T15:22:34.972564 tid5556 [IFO,App] Installing plugin org.micromanager.hcs.SiteGenerator... 2016-12-20T15:22:34.972564 tid5556 [IFO,App] Installing plugin org.micromanager.intelligentacquisition.IntelligentAcquisition... 2016-12-20T15:22:34.972564 tid5556 [IFO,App] Installing plugin org.micromanager.plugins.magellan.main.Magellan... 2016-12-20T15:22:34.972564 tid5556 [IFO,App] Installing plugin com.imaging100x.tracker.TrackerControl... 2016-12-20T15:22:34.988164 tid5556 [IFO,App] Installing plugin org.micromanager.patternoverlay.PatternOverlayPlugin... 2016-12-20T15:22:34.988164 tid5556 [IFO,App] Installing plugin org.micromanager.slideexplorer.SlideExplorerPlugin... 2016-12-20T15:22:34.988164 tid5556 [IFO,App] Added URL to system class loader: file:/C:/OpenSPIM-20150427/OpenSPIM.app/mmplugins/Beta/ 2016-12-20T15:22:34.988164 tid5556 [IFO,App] Added URL to system class loader: jar:file:C:\OpenSPIM-20150427\OpenSPIM.app\mmplugins\Beta\CRISPv2.jar!/ 2016-12-20T15:22:35.003764 tid5556 [IFO,App] Added URL to system class loader: jar:file:C:\OpenSPIM-20150427\OpenSPIM.app\mmplugins\Beta\SlideExplorer2.jar!/ 2016-12-20T15:22:36.158166 tid5556 [IFO,App] Installing plugin com.asiimaging.CRISPv2.ASI_CRISP_V2... 2016-12-20T15:22:36.158166 tid5556 [IFO,App] Installing plugin org.micromanager.SlideExplorer2... 2016-12-20T15:22:36.158166 tid5556 [IFO,App] Error: Plugin [org.micromanager.SlideExplorer2] has no menuName field 2016-12-20T15:22:36.158166 tid5556 [IFO,App] org.micromanager.SlideExplorer2 fails to implement static String tooltipDescription. 2016-12-20T15:22:36.158166 tid5556 [IFO,App] Added URL to system class loader: file:/C:/OpenSPIM-20150427/OpenSPIM.app/mmplugins/Developer_Tools/ 2016-12-20T15:22:36.158166 tid5556 [IFO,App] Added URL to system class loader: jar:file:C:\OpenSPIM-20150427\OpenSPIM.app\mmplugins\Developer_Tools\ClojureEditor.jar!/ 2016-12-20T15:22:36.158166 tid5556 [IFO,App] Added URL to system class loader: jar:file:C:\OpenSPIM-20150427\OpenSPIM.app\mmplugins\Developer_Tools\DLLAutoReloader.jar!/ 2016-12-20T15:22:36.251767 tid5556 [IFO,App] Added URL to system class loader: jar:file:C:\OpenSPIM-20150427\OpenSPIM.app\mmplugins\Developer_Tools\SequenceBufferMonitor.jar!/ 2016-12-20T15:22:36.251767 tid5556 [IFO,App] Installing plugin org.micromanager.clojureeditor.ClojureEditorPlugin... 2016-12-20T15:22:36.251767 tid5556 [IFO,App] Installing plugin org.micromanager.DLLAutoReloader... 2016-12-20T15:22:36.251767 tid5556 [IFO,App] Error: Plugin [org.micromanager.DLLAutoReloader] has no menuName field 2016-12-20T15:22:36.251767 tid5556 [IFO,App] org.micromanager.DLLAutoReloader fails to implement static String tooltipDescription. 2016-12-20T15:22:36.251767 tid5556 [IFO,App] Installing plugin org.micromanager.plugins.sequencebuffermonitor.SequenceBufferMonitor... 2016-12-20T15:22:36.251767 tid5556 [IFO,App] Added URL to system class loader: file:/C:/OpenSPIM-20150427/OpenSPIM.app/mmplugins/Device_Control/ 2016-12-20T15:22:36.251767 tid5556 [IFO,App] Added URL to system class loader: jar:file:C:\OpenSPIM-20150427\OpenSPIM.app\mmplugins\Device_Control\ASIdiSPIM.jar!/ 2016-12-20T15:22:36.485767 tid5556 [IFO,App] Added URL to system class loader: jar:file:C:\OpenSPIM-20150427\OpenSPIM.app\mmplugins\Device_Control\AutoLase.jar!/ 2016-12-20T15:22:36.516967 tid5556 [IFO,App] Added URL to system class loader: jar:file:C:\OpenSPIM-20150427\OpenSPIM.app\mmplugins\Device_Control\CRISP.jar!/ 2016-12-20T15:22:36.532567 tid5556 [IFO,App] Added URL to system class loader: jar:file:C:\OpenSPIM-20150427\OpenSPIM.app\mmplugins\Device_Control\MightexPolygon.jar!/ 2016-12-20T15:22:36.594967 tid5556 [IFO,App] Added URL to system class loader: jar:file:C:\OpenSPIM-20150427\OpenSPIM.app\mmplugins\Device_Control\MultiCamera.jar!/ 2016-12-20T15:22:36.610567 tid5556 [IFO,App] Added URL to system class loader: jar:file:C:\OpenSPIM-20150427\OpenSPIM.app\mmplugins\Device_Control\pgFocus.jar!/ 2016-12-20T15:22:36.626167 tid5556 [IFO,App] Added URL to system class loader: jar:file:C:\OpenSPIM-20150427\OpenSPIM.app\mmplugins\Device_Control\Projector.jar!/ 2016-12-20T15:22:36.704167 tid5556 [IFO,App] Added URL to system class loader: jar:file:C:\OpenSPIM-20150427\OpenSPIM.app\mmplugins\Device_Control\StageControl.jar!/ 2016-12-20T15:22:36.735367 tid5556 [IFO,App] Added URL to system class loader: jar:file:C:\OpenSPIM-20150427\OpenSPIM.app\mmplugins\Device_Control\WhiteBalance.jar!/ 2016-12-20T15:22:36.750967 tid5556 [IFO,App] Installing plugin org.micromanager.asidispim.ASIdiSPIM... 2016-12-20T15:22:36.750967 tid5556 [IFO,App] Installing plugin ch.epfl.leb.autolase.AutoLasePlugin... 2016-12-20T15:22:36.750967 tid5556 [IFO,App] Installing plugin org.micromanager.CRISP.CRISP... 2016-12-20T15:22:36.750967 tid5556 [IFO,App] Installing plugin org.micromanager.polygon.PolygonPlugin... 2016-12-20T15:22:36.750967 tid5556 [IFO,App] Installing plugin org.micromanager.multicamera.MultiCamera... 2016-12-20T15:22:36.750967 tid5556 [IFO,App] Installing plugin edu.umassmed.pgfocus.pgFocus... 2016-12-20T15:22:36.750967 tid5556 [IFO,App] Installing plugin org.micromanager.projector.ProjectorPlugin... 2016-12-20T15:22:36.750967 tid5556 [IFO,App] Installing plugin org.micromanager.stagecontrol.StageControl... 2016-12-20T15:22:36.750967 tid5556 [IFO,App] Installing plugin PMQI.AutoWB... 2016-12-20T15:22:36.750967 tid5556 [IFO,App] Added URL to system class loader: file:/C:/OpenSPIM-20150427/OpenSPIM.app/mmplugins/On-The-Fly_Processors/ 2016-12-20T15:22:36.750967 tid5556 [IFO,App] Added URL to system class loader: jar:file:C:\OpenSPIM-20150427\OpenSPIM.app\mmplugins\On-The-Fly_Processors\ImageFlipper.jar!/ 2016-12-20T15:22:36.750967 tid5556 [IFO,App] Added URL to system class loader: jar:file:C:\OpenSPIM-20150427\OpenSPIM.app\mmplugins\On-The-Fly_Processors\MultiChannelShading.jar!/ 2016-12-20T15:22:36.782167 tid5556 [IFO,App] Added URL to system class loader: jar:file:C:\OpenSPIM-20150427\OpenSPIM.app\mmplugins\On-The-Fly_Processors\SplitView.jar!/ 2016-12-20T15:22:36.782167 tid5556 [IFO,App] Installing plugin org.micromanager.newimageflipper.NewTaggedImageFlipper... 2016-12-20T15:22:36.797767 tid5556 [IFO,App] Installing plugin org.micromanager.multichannelshading.MultiChannelShading... 2016-12-20T15:22:36.797767 tid5556 [IFO,App] Installing plugin org.micromanager.splitview.SplitView... 2016-12-20T15:22:36.828968 tid5556 [IFO,App] Added URL to system class loader: file:/C:/OpenSPIM-20150427/OpenSPIM.app/mmautofocus/ 2016-12-20T15:22:36.828968 tid5556 [IFO,App] Added URL to system class loader: jar:file:C:\OpenSPIM-20150427\OpenSPIM.app\mmautofocus\HardwareFocusExtender.jar!/ 2016-12-20T15:22:36.828968 tid5556 [IFO,App] Added URL to system class loader: jar:file:C:\OpenSPIM-20150427\OpenSPIM.app\mmautofocus\MMAutofocus.jar!/ 2016-12-20T15:22:36.828968 tid5556 [IFO,App] Added URL to system class loader: jar:file:C:\OpenSPIM-20150427\OpenSPIM.app\mmautofocus\MMAutofocusDuo.jar!/ 2016-12-20T15:22:36.828968 tid5556 [IFO,App] Added URL to system class loader: jar:file:C:\OpenSPIM-20150427\OpenSPIM.app\mmautofocus\MMAutofocusTB.jar!/ 2016-12-20T15:22:36.828968 tid5556 [IFO,App] Added URL to system class loader: jar:file:C:\OpenSPIM-20150427\OpenSPIM.app\mmautofocus\MMNullAutofocus.jar!/ 2016-12-20T15:22:36.828968 tid5556 [IFO,App] Added URL to system class loader: jar:file:C:\OpenSPIM-20150427\OpenSPIM.app\mmautofocus\MMOughtaFocus.jar!/ 2016-12-20T15:22:36.844568 tid5556 [IFO,App] Attempting to install autofocus plugin HardwareFocusExtender 2016-12-20T15:22:36.844568 tid5556 [IFO,App] Attempting to install autofocus plugin Autofocus 2016-12-20T15:22:36.844568 tid5556 [IFO,App] Attempting to install autofocus plugin AutofocusDuo 2016-12-20T15:22:36.844568 tid5556 [IFO,App] Attempting to install autofocus plugin AutofocusTB 2016-12-20T15:22:36.844568 tid5556 [IFO,App] Attempting to install autofocus plugin NullAutofocus 2016-12-20T15:22:36.844568 tid5556 [IFO,App] Attempting to install autofocus plugin OughtaFocus 2016-12-20T15:22:39.278172 tid5404 [IFO,App] Finished waiting for plugins to load 2016-12-20T15:22:39.324972 tid5404 [dbg,Core] Will set Core property: Initialize = 0 2016-12-20T15:22:39.324972 tid5404 [dbg,Core] Will unload all devices 2016-12-20T15:22:39.324972 tid5404 [IFO,Core] Did unload all devices 2016-12-20T15:22:39.324972 tid5404 [dbg,App] Notification for Device: Core Property: Initialize changed to value: 0 ignored since the system is still loading 2016-12-20T15:22:39.324972 tid5404 [dbg,Core] Did set Core property: Initialize = 0 2016-12-20T15:22:39.324972 tid5404 [dbg,Core] Will load device HamamatsuHam_DCAM from HamamatsuHam 2016-12-20T15:22:39.340572 tid5404 [IFO,Core] Did load device HamamatsuHam_DCAM from HamamatsuHam; label = HamamatsuHam_DCAM 2016-12-20T15:22:39.340572 tid5404 [dbg,Core] Will load device Standa8SMC4Z from Standa8SMC4 2016-12-20T15:22:39.356172 tid5404 [IFO,Core] Did load device Standa8SMC4Z from Standa8SMC4; label = Standa8SMC4Z 2016-12-20T15:22:39.356172 tid5404 [dbg,Core] Will load device Standa8SMC4XY from Standa8SMC4 2016-12-20T15:22:39.356172 tid5404 [IFO,Core] Did load device Standa8SMC4XY from Standa8SMC4; label = Standa8SMC4XY 2016-12-20T15:22:39.356172 tid5404 [dbg,Core] Will load device Picard Twister from PicardStage 2016-12-20T15:22:39.371772 tid5404 [IFO,Core] Did load device Picard Twister from PicardStage; label = Picard Twister 2016-12-20T15:22:39.371772 tid5404 [dbg,Core:dev:Standa8SMC4Z] Will set property "Port Z" to "xi-com:%5C%5C.%5CCOM3" 2016-12-20T15:22:39.371772 tid5404 [dbg,Core:dev:Standa8SMC4Z] Did set property "Port Z" to "xi-com:%5C%5C.%5CCOM3" 2016-12-20T15:22:39.371772 tid5404 [dbg,Core:dev:Standa8SMC4Z] Will set property "UnitMultiplier" to "1.2500" 2016-12-20T15:22:39.371772 tid5404 [dbg,Core:dev:Standa8SMC4Z] Did set property "UnitMultiplier" to "1.2500" 2016-12-20T15:22:39.371772 tid5404 [dbg,Core:dev:Standa8SMC4XY] Will set property "Port X" to "xi-com:%5C%5C.%5CCOM4" 2016-12-20T15:22:39.371772 tid5404 [dbg,Core:dev:Standa8SMC4XY] Did set property "Port X" to "xi-com:%5C%5C.%5CCOM4" 2016-12-20T15:22:39.371772 tid5404 [dbg,Core:dev:Standa8SMC4XY] Will set property "Port Y" to "xi-com:%5C%5C.%5CCOM5" 2016-12-20T15:22:39.371772 tid5404 [dbg,Core:dev:Standa8SMC4XY] Did set property "Port Y" to "xi-com:%5C%5C.%5CCOM5" 2016-12-20T15:22:39.371772 tid5404 [dbg,Core:dev:Standa8SMC4XY] Will set property "UnitMultiplierX" to "1.2500" 2016-12-20T15:22:39.371772 tid5404 [dbg,Core:dev:Standa8SMC4XY] Did set property "UnitMultiplierX" to "1.2500" 2016-12-20T15:22:39.371772 tid5404 [dbg,Core:dev:Standa8SMC4XY] Will set property "UnitMultiplierY" to "1.2500" 2016-12-20T15:22:39.371772 tid5404 [dbg,Core:dev:Standa8SMC4XY] Did set property "UnitMultiplierY" to "1.2500" 2016-12-20T15:22:39.371772 tid5404 [dbg,Core:dev:Picard Twister] Will set property "Max" to "32767" 2016-12-20T15:22:39.371772 tid5404 [dbg,Core:dev:Picard Twister] Did set property "Max" to "32767" 2016-12-20T15:22:39.371772 tid5404 [dbg,Core:dev:Picard Twister] Will set property "Min" to "-32767" 2016-12-20T15:22:39.371772 tid5404 [dbg,Core:dev:Picard Twister] Did set property "Min" to "-32767" 2016-12-20T15:22:39.371772 tid5404 [dbg,Core:dev:Picard Twister] Will set property "Serial Number" to "99" 2016-12-20T15:22:39.387372 tid5404 [dbg,Core:dev:Picard Twister] Did set property "Serial Number" to "99" 2016-12-20T15:22:39.387372 tid5404 [dbg,Core:dev:Picard Twister] Will set property "StepSize" to "1.0000" 2016-12-20T15:22:39.387372 tid5404 [dbg,Core:dev:Picard Twister] Did set property "StepSize" to "1.0000" 2016-12-20T15:22:39.387372 tid5404 [dbg,Core] Will set Core property: Initialize = 1 2016-12-20T15:22:39.387372 tid5404 [IFO,Core] Will initialize 4 devices 2016-12-20T15:22:39.387372 tid5404 [IFO,Core] Will initialize device HamamatsuHam_DCAM 2016-12-20T15:22:40.510833 tid5404 [IFO,Core] Did initialize device HamamatsuHam_DCAM 2016-12-20T15:22:40.510833 tid5404 [IFO,Core] Default camera set to HamamatsuHam_DCAM 2016-12-20T15:22:40.510833 tid5404 [IFO,Core] Will initialize device Standa8SMC4Z 2016-12-20T15:22:40.510833 tid5404 [dbg,dev:Standa8SMC4Z] In Standa8SMC4Z::initialize 2016-12-20T15:22:40.510833 tid5404 [dbg,dev:Standa8SMC4Z] using port xi-com:%5C%5C.%5CCOM3 2016-12-20T15:22:40.511833 tid5404 [dbg,dev:Standa8SMC4XY] Standa8SMC4 4: [151c] semaphore 3808 inited 2016-12-20T15:22:40.511833 tid5404 [dbg,dev:Standa8SMC4XY] Standa8SMC4 4: [151c] semaphore 3008 inited 2016-12-20T15:22:40.511833 tid5404 [dbg,dev:Standa8SMC4XY] Standa8SMC4 4: [151c] semaphore 4220 inited 2016-12-20T15:22:40.511833 tid5404 [dbg,dev:Standa8SMC4XY] Standa8SMC4 4: [151c] Name xi-com:%5C%5C.%5CCOM3 resolved to dt 'xi-com', host '' and path '%5C%5C.%5CCOM3' decoded path '\\.\COM3', abs path '\\.\COM3' 2016-12-20T15:22:40.513833 tid5404 [IFO,Core] Did initialize device Standa8SMC4Z 2016-12-20T15:22:40.513833 tid5404 [IFO,Core] Will initialize device Standa8SMC4XY 2016-12-20T15:22:40.513833 tid5404 [dbg,dev:Standa8SMC4XY] In Standa8SMC4XY::initialize 2016-12-20T15:22:40.513833 tid5404 [dbg,dev:Standa8SMC4XY] using ports xi-com:%5C%5C.%5CCOM4 and xi-com:%5C%5C.%5CCOM5 2016-12-20T15:22:40.513833 tid5404 [dbg,dev:Standa8SMC4XY] Standa8SMC4 4: [151c] semaphore 4228 inited 2016-12-20T15:22:40.513833 tid5404 [dbg,dev:Standa8SMC4XY] Standa8SMC4 4: [151c] Name xi-com:%5C%5C.%5CCOM4 resolved to dt 'xi-com', host '' and path '%5C%5C.%5CCOM4' decoded path '\\.\COM4', abs path '\\.\COM4' 2016-12-20T15:22:40.514833 tid5404 [dbg,dev:Standa8SMC4XY] Standa8SMC4 4: [151c] semaphore 4236 inited 2016-12-20T15:22:40.514833 tid5404 [dbg,dev:Standa8SMC4XY] Standa8SMC4 4: [151c] Name xi-com:%5C%5C.%5CCOM5 resolved to dt 'xi-com', host '' and path '%5C%5C.%5CCOM5' decoded path '\\.\COM5', abs path '\\.\COM5' 2016-12-20T15:22:40.516833 tid5404 [IFO,Core] Did initialize device Standa8SMC4XY 2016-12-20T15:22:40.516833 tid5404 [IFO,Core] Default xy stage set to Standa8SMC4XY 2016-12-20T15:22:40.516833 tid5404 [IFO,Core] Will initialize device Picard Twister 2016-12-20T15:22:40.545835 tid5404 [IFO,Core] Did initialize device Picard Twister 2016-12-20T15:22:40.545835 tid5404 [IFO,Core] Finished initializing 4 devices 2016-12-20T15:22:40.545835 tid5404 [dbg,App] Notification for Device: Core Property: Initialize changed to value: 1 ignored since the system is still loading 2016-12-20T15:22:40.545835 tid5404 [dbg,Core] Did set Core property: Initialize = 1 2016-12-20T15:22:40.546835 tid5404 [dbg,Core] Will set Core property: Camera = HamamatsuHam_DCAM 2016-12-20T15:22:40.546835 tid5404 [IFO,Core] Default camera set to HamamatsuHam_DCAM 2016-12-20T15:22:40.546835 tid5404 [dbg,App] Notification for Device: Core Property: Camera changed to value: HamamatsuHam_DCAM ignored since the system is still loading 2016-12-20T15:22:40.546835 tid5404 [dbg,Core] Did set Core property: Camera = HamamatsuHam_DCAM 2016-12-20T15:22:40.546835 tid5404 [dbg,Core] Will set Core property: Focus = Standa8SMC4Z 2016-12-20T15:22:40.546835 tid5404 [IFO,Core] Default stage set to Standa8SMC4Z 2016-12-20T15:22:40.546835 tid5404 [dbg,App] Notification for Device: Core Property: Focus changed to value: Standa8SMC4Z ignored since the system is still loading 2016-12-20T15:22:40.546835 tid5404 [dbg,Core] Did set Core property: Focus = Standa8SMC4Z 2016-12-20T15:22:40.546835 tid5404 [dbg,Core] Will set Core property: AutoShutter = 0 2016-12-20T15:22:40.546835 tid5404 [dbg,Core] Autoshutter turned off 2016-12-20T15:22:40.546835 tid5404 [dbg,App] Notification for Device: Core Property: AutoShutter changed to value: 0 ignored since the system is still loading 2016-12-20T15:22:40.546835 tid5404 [dbg,Core] Did set Core property: AutoShutter = 0 2016-12-20T15:22:40.546835 tid5404 [dbg,Core] Config group camera: preset 2x2 350: added setting HamamatsuHam_DCAM-Binning = 2x2 2016-12-20T15:22:40.546835 tid5404 [dbg,Core] Config group camera: preset 2x2 350: added setting HamamatsuHam_DCAM-Exposure = 350.0070 2016-12-20T15:22:40.546835 tid5404 [dbg,Core] Config group camera: preset cam 80ms 2x2bin: added setting HamamatsuHam_DCAM-Binning = 2x2 2016-12-20T15:22:40.546835 tid5404 [dbg,Core] Config group camera: preset cam 80ms 2x2bin: added setting HamamatsuHam_DCAM-Exposure = 80.0012 2016-12-20T15:22:40.546835 tid5404 [dbg,Core] Config group timeout: preset longest: added setting Core-TimeoutMs = 50000 2016-12-20T15:22:40.546835 tid5404 [dbg,Core] Config group timeout: preset longer: added setting Core-TimeoutMs = 25000 2016-12-20T15:22:40.546835 tid5404 [dbg,Core] Pixel size config: preset SPIM: added setting : Core-Initialize = 1 2016-12-20T15:22:40.546835 tid5404 [dbg,Core] Pixel size config: preset SPIM: set resolution to 1.57213 um/px 2016-12-20T15:22:40.546835 tid5404 [dbg,Core] Pixel size config: preset Uncalibrated: added setting : Core-Initialize = 1 2016-12-20T15:22:40.546835 tid5404 [dbg,Core] Pixel size config: preset Uncalibrated: set resolution to 1.00000 um/px 2016-12-20T15:22:40.546835 tid5404 [dbg,Core] Waiting for device HamamatsuHam_DCAM... 2016-12-20T15:22:40.546835 tid5404 [dbg,Core] Finished waiting for device HamamatsuHam_DCAM 2016-12-20T15:22:40.546835 tid5404 [dbg,Core] Waiting for device Standa8SMC4Z... 2016-12-20T15:22:40.546835 tid5404 [dbg,dev:Standa8SMC4Z] Standa8SMC4Z::Busy 2016-12-20T15:22:40.546835 tid5404 [dbg,dev:Standa8SMC4Z] Standa8SMC4Z::Busy returned 0 2016-12-20T15:22:40.546835 tid5404 [dbg,Core] Finished waiting for device Standa8SMC4Z 2016-12-20T15:22:40.546835 tid5404 [dbg,Core] Waiting for device Standa8SMC4XY... 2016-12-20T15:22:40.546835 tid5404 [dbg,dev:Standa8SMC4XY] Standa8SMC4XY::Busy 2016-12-20T15:22:40.546835 tid5404 [dbg,dev:Standa8SMC4XY] Standa8SMC4XY::Busy returned 0 2016-12-20T15:22:40.546835 tid5404 [dbg,Core] Finished waiting for device Standa8SMC4XY 2016-12-20T15:22:40.546835 tid5404 [dbg,Core] Waiting for device Picard Twister... 2016-12-20T15:22:40.577837 tid5404 [dbg,Core] Finished waiting for device Picard Twister 2016-12-20T15:22:40.577837 tid5404 [dbg,Core] Will update system state cache 2016-12-20T15:22:40.578837 tid5404 [IFO,Core] Did update system state cache 2016-12-20T15:22:40.580837 tid5404 [dbg,dev:Standa8SMC4Z] Standa8SMC4Z::GetPositionUm 2016-12-20T15:22:40.581837 tid5404 [dbg,dev:Standa8SMC4Z] Standa8SMC4Z::GetPositionUm returned pos=13200.00 2016-12-20T15:22:40.581837 tid5404 [dbg,dev:Standa8SMC4XY] Standa8SMC4XY::GetPositionUm 2016-12-20T15:22:40.582837 tid5404 [dbg,dev:Standa8SMC4XY] Standa8SMC4XY::GetPositionUm returned x=5602.47 y=15295.54 2016-12-20T15:22:40.585837 tid5404 [IFO,App] Updating GUI; config pad = true; from cache = false 2016-12-20T15:22:40.585837 tid5404 [dbg,dev:Standa8SMC4Z] Standa8SMC4Z::GetPositionUm 2016-12-20T15:22:40.585837 tid5404 [dbg,dev:Standa8SMC4Z] Standa8SMC4Z::GetPositionUm returned pos=13200.00 2016-12-20T15:22:40.585837 tid5404 [dbg,dev:Standa8SMC4XY] Standa8SMC4XY::GetPositionUm 2016-12-20T15:22:40.586837 tid5404 [dbg,dev:Standa8SMC4XY] Standa8SMC4XY::GetPositionUm returned x=5602.47 y=15295.54 2016-12-20T15:22:40.588837 tid5404 [dbg,Core] Will update system state cache 2016-12-20T15:22:40.589837 tid5404 [IFO,Core] Did update system state cache 2016-12-20T15:22:40.589837 tid5404 [IFO,App] Finished updating GUI 2016-12-20T15:22:40.590837 tid5404 [IFO,App] Startup script file (C:\OpenSPIM-20150427\OpenSPIM.app\MMStartup.bsh) not present. 2016-12-20T15:22:40.733846 tid5404 [IFO,App] Rebuilding config group table 2016-12-20T15:22:40.734846 tid5404 [IFO,App] Finished rebuilding config group table 2016-12-20T15:22:40.756847 tid5404 [IFO,App] [UI] JButton "OK" clicked in MMIntroDlg. 2016-12-20T15:22:49.835366 tid5404 [IFO,App] [UI] JMenu "Plugins" clicked in MainFrame. 2016-12-20T15:22:50.467402 tid5404 [IFO,App] Plugin command: Acquire SPIM image 2016-12-20T15:22:50.469402 tid5404 [dbg,dev:Standa8SMC4XY] Standa8SMC4XY::GetPositionUm 2016-12-20T15:22:50.470402 tid5404 [dbg,dev:Standa8SMC4XY] Standa8SMC4XY::GetPositionUm returned x=5602.47 y=15295.54 2016-12-20T15:22:50.477403 tid5404 [dbg,dev:Standa8SMC4XY] Standa8SMC4XY::GetPositionUm 2016-12-20T15:22:50.478403 tid5404 [dbg,dev:Standa8SMC4XY] Standa8SMC4XY::GetPositionUm returned x=5602.47 y=15295.54 2016-12-20T15:22:50.478403 tid5404 [IFO,App] Thread 16 (AWT-EventQueue-0) terminated with uncaught exception 2016-12-20T15:22:50.478403 tid5404 [IFO,App] java.lang.IllegalArgumentException: invalid range properties 2016-12-20T15:22:50.478403 tid5404 [IFO,App] at javax.swing.DefaultBoundedRangeModel.(DefaultBoundedRangeModel.java:102) 2016-12-20T15:22:50.478403 tid5404 [IFO,App] at javax.swing.JSlider.(JSlider.java:274) 2016-12-20T15:22:50.478403 tid5404 [IFO,App] at javax.swing.JSlider.(JSlider.java:241) 2016-12-20T15:22:50.478403 tid5404 [IFO,App] at spim.gui.component.SteppedSlider.(SteppedSlider.java:65) 2016-12-20T15:22:50.478403 tid5404 [IFO,App] at spim.SPIMAcquisition$23.(SPIMAcquisition.java:1264) 2016-12-20T15:22:50.478403 tid5404 [IFO,App] at spim.SPIMAcquisition.makeStageSlider(SPIMAcquisition.java:1264) 2016-12-20T15:22:50.478403 tid5404 [IFO,App] at spim.SPIMAcquisition.initUI(SPIMAcquisition.java:376) 2016-12-20T15:22:50.478403 tid5404 [IFO,App] at spim.SPIMAcquisition.show(SPIMAcquisition.java:237) 2016-12-20T15:22:50.478403 tid5404 [IFO,App] at org.micromanager.pluginmanagement.PluginManager.displayPlugin(PluginManager.java:114) 2016-12-20T15:22:50.478403 tid5404 [IFO,App] at org.micromanager.pluginmanagement.PluginManager.access$100(PluginManager.java:22) 2016-12-20T15:22:50.478403 tid5404 [IFO,App] at org.micromanager.pluginmanagement.PluginManager$2.run(PluginManager.java:64) 2016-12-20T15:22:50.478403 tid5404 [IFO,App] at org.micromanager.utils.GUIUtils$3.actionPerformed(GUIUtils.java:362) 2016-12-20T15:22:50.478403 tid5404 [IFO,App] at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2022) 2016-12-20T15:22:50.478403 tid5404 [IFO,App] at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2346) 2016-12-20T15:22:50.478403 tid5404 [IFO,App] at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:402) 2016-12-20T15:22:50.478403 tid5404 [IFO,App] at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:259) 2016-12-20T15:22:50.478403 tid5404 [IFO,App] at javax.swing.AbstractButton.doClick(AbstractButton.java:376) 2016-12-20T15:22:50.478403 tid5404 [IFO,App] at javax.swing.plaf.basic.BasicMenuItemUI.doClick(BasicMenuItemUI.java:833) 2016-12-20T15:22:50.478403 tid5404 [IFO,App] at javax.swing.plaf.basic.BasicMenuItemUI$Handler.mouseReleased(BasicMenuItemUI.java:877) 2016-12-20T15:22:50.478403 tid5404 [IFO,App] at java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:289) 2016-12-20T15:22:50.478403 tid5404 [IFO,App] at java.awt.Component.processMouseEvent(Component.java:6525) 2016-12-20T15:22:50.478403 tid5404 [IFO,App] at javax.swing.JComponent.processMouseEvent(JComponent.java:3324) 2016-12-20T15:22:50.478403 tid5404 [IFO,App] at java.awt.Component.processEvent(Component.java:6290) 2016-12-20T15:22:50.478403 tid5404 [IFO,App] at java.awt.Container.processEvent(Container.java:2234) 2016-12-20T15:22:50.478403 tid5404 [IFO,App] at java.awt.Component.dispatchEventImpl(Component.java:4881) 2016-12-20T15:22:50.478403 tid5404 [IFO,App] at java.awt.Container.dispatchEventImpl(Container.java:2292) 2016-12-20T15:22:50.478403 tid5404 [IFO,App] at java.awt.Component.dispatchEvent(Component.java:4703) 2016-12-20T15:22:50.478403 tid5404 [IFO,App] at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4898) 2016-12-20T15:22:50.478403 tid5404 [IFO,App] at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4533) 2016-12-20T15:22:50.478403 tid5404 [IFO,App] at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4462) 2016-12-20T15:22:50.478403 tid5404 [IFO,App] at java.awt.Container.dispatchEventImpl(Container.java:2278) 2016-12-20T15:22:50.478403 tid5404 [IFO,App] at java.awt.Window.dispatchEventImpl(Window.java:2750) 2016-12-20T15:22:50.478403 tid5404 [IFO,App] at java.awt.Component.dispatchEvent(Component.java:4703) 2016-12-20T15:22:50.478403 tid5404 [IFO,App] at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:758) 2016-12-20T15:22:50.478403 tid5404 [IFO,App] at java.awt.EventQueue.access$500(EventQueue.java:97) 2016-12-20T15:22:50.478403 tid5404 [IFO,App] at java.awt.EventQueue$3.run(EventQueue.java:709) 2016-12-20T15:22:50.478403 tid5404 [IFO,App] at java.awt.EventQueue$3.run(EventQueue.java:703) 2016-12-20T15:22:50.478403 tid5404 [IFO,App] at java.security.AccessController.doPrivileged(Native Method) 2016-12-20T15:22:50.478403 tid5404 [IFO,App] at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:75) 2016-12-20T15:22:50.478403 tid5404 [IFO,App] at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:86) 2016-12-20T15:22:50.478403 tid5404 [IFO,App] at java.awt.EventQueue$4.run(EventQueue.java:731) 2016-12-20T15:22:50.478403 tid5404 [IFO,App] at java.awt.EventQueue$4.run(EventQueue.java:729) 2016-12-20T15:22:50.478403 tid5404 [IFO,App] at java.security.AccessController.doPrivileged(Native Method) 2016-12-20T15:22:50.478403 tid5404 [IFO,App] at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:75) 2016-12-20T15:22:50.478403 tid5404 [IFO,App] at java.awt.EventQueue.dispatchEvent(EventQueue.java:728) 2016-12-20T15:22:50.478403 tid5404 [IFO,App] at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:201) 2016-12-20T15:22:50.478403 tid5404 [IFO,App] at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116) 2016-12-20T15:22:50.478403 tid5404 [IFO,App] at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105) 2016-12-20T15:22:50.478403 tid5404 [IFO,App] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101) 2016-12-20T15:22:50.478403 tid5404 [IFO,App] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93) 2016-12-20T15:22:50.478403 tid5404 [IFO,App] at java.awt.EventDispatchThread.run(EventDispatchThread.java:82)