2015-05-06T10:32:59.668864 tid9700 [IFO,LogManager] Enabled primary log file C:\Users\HCFlashDemo\Desktop\Fiji.app\CoreLogs\CoreLog20150506T103259_pid1368.txt 2015-05-06T10:32:59.668864 tid9700 [IFO,App] User: HCFlashDemo 2015-05-06T10:32:59.668864 tid9700 [IFO,App] Host: HCFlashDemo-T36 2015-05-06T10:32:59.668864 tid9700 [IFO,App] MM Studio version: 1.4.22 20150430 2015-05-06T10:32:59.668864 tid9700 [IFO,App] MMCore version 7.0.2 2015-05-06T10:32:59.668864 tid9700 [IFO,App] Device API version 61, Module API version 10 2015-05-06T10:32:59.668864 tid9700 [IFO,App] Operating System: Windows 7 (amd64) 6.1 2015-05-06T10:32:59.668864 tid9700 [IFO,App] JVM: Java HotSpot(TM) 64-Bit Server VM, version 1.6.0_24, 64-bit 2015-05-06T10:32:59.678864 tid8520 [IFO,App] Added URL to system class loader: file:/C:/Users/HCFLAS~1/Desktop/Fiji.app/mmplugins/ 2015-05-06T10:32:59.678864 tid8520 [IFO,App] Added URL to system class loader: jar:file:C:\Users\HCFLAS~1\Desktop\Fiji.app\mmplugins\Big.jar!/ 2015-05-06T10:32:59.678864 tid8520 [IFO,App] Added URL to system class loader: jar:file:C:\Users\HCFLAS~1\Desktop\Fiji.app\mmplugins\DataBrowser.jar!/ 2015-05-06T10:33:00.578865 tid8520 [IFO,App] Added URL to system class loader: jar:file:C:\Users\HCFLAS~1\Desktop\Fiji.app\mmplugins\PixelCalibrator.jar!/ 2015-05-06T10:33:00.588865 tid8520 [IFO,App] Added URL to system class loader: jar:file:C:\Users\HCFLAS~1\Desktop\Fiji.app\mmplugins\Recall.jar!/ 2015-05-06T10:33:00.588865 tid8520 [IFO,App] Added URL to system class loader: jar:file:C:\Users\HCFLAS~1\Desktop\Fiji.app\mmplugins\SPIMAcquisition-1.0.0-SNAPSHOT.jar!/ 2015-05-06T10:33:00.688865 tid8520 [IFO,App] Installing plugin org.micromanager.browser.Data_Browser... 2015-05-06T10:33:00.688865 tid8520 [IFO,App] Error: Plugin [org.micromanager.browser.Data_Browser] has no menuName field 2015-05-06T10:33:00.688865 tid8520 [IFO,App] org.micromanager.browser.Data_Browser fails to implement static String tooltipDescription. 2015-05-06T10:33:00.688865 tid8520 [IFO,App] Installing plugin org.micromanager.pixelcalibrator.PixelCalibratorPlugin... 2015-05-06T10:33:00.688865 tid8520 [IFO,App] Installing plugin org.micromanager.recall.RecallPlugin... 2015-05-06T10:33:00.688865 tid8520 [IFO,App] Installing plugin spim.SPIMAcquisition... 2015-05-06T10:33:00.688865 tid8520 [IFO,App] Added URL to system class loader: file:/C:/Users/HCFLAS~1/Desktop/Fiji.app/mmplugins/Acquisition_Tools/ 2015-05-06T10:33:00.688865 tid8520 [IFO,App] Added URL to system class loader: jar:file:C:\Users\HCFLAS~1\Desktop\Fiji.app\mmplugins\Acquisition_Tools\AcquireMultipleRegions.jar!/ 2015-05-06T10:33:00.718865 tid8520 [IFO,App] Added URL to system class loader: jar:file:C:\Users\HCFLAS~1\Desktop\Fiji.app\mmplugins\Acquisition_Tools\Gaussian.jar!/ 2015-05-06T10:33:00.878865 tid8520 [IFO,App] Added URL to system class loader: jar:file:C:\Users\HCFLAS~1\Desktop\Fiji.app\mmplugins\Acquisition_Tools\HCS.jar!/ 2015-05-06T10:33:00.898865 tid8520 [IFO,App] Added URL to system class loader: jar:file:C:\Users\HCFLAS~1\Desktop\Fiji.app\mmplugins\Acquisition_Tools\IntelligentAcquisition.jar!/ 2015-05-06T10:33:00.918866 tid8520 [IFO,App] Added URL to system class loader: jar:file:C:\Users\HCFLAS~1\Desktop\Fiji.app\mmplugins\Acquisition_Tools\MMTracker.jar!/ 2015-05-06T10:33:00.928866 tid8520 [IFO,App] Added URL to system class loader: jar:file:C:\Users\HCFLAS~1\Desktop\Fiji.app\mmplugins\Acquisition_Tools\PatternOverlay.jar!/ 2015-05-06T10:33:00.948866 tid8520 [IFO,App] Added URL to system class loader: jar:file:C:\Users\HCFLAS~1\Desktop\Fiji.app\mmplugins\Acquisition_Tools\SlideExplorer.jar!/ 2015-05-06T10:33:00.988866 tid8520 [IFO,App] Installing plugin org.micromanager.acquiremultipleregions.AcquireMultipleRegions... 2015-05-06T10:33:00.988866 tid8520 [IFO,App] Installing plugin GaussianTrack_... 2015-05-06T10:33:00.988866 tid8520 [IFO,App] Installing plugin org.micromanager.hcs.SiteGenerator... 2015-05-06T10:33:00.988866 tid8520 [IFO,App] Installing plugin org.micromanager.intelligentacquisition.IntelligentAcquisition... 2015-05-06T10:33:00.988866 tid8520 [IFO,App] Installing plugin com.imaging100x.tracker.TrackerControl... 2015-05-06T10:33:00.988866 tid8520 [IFO,App] Installing plugin org.micromanager.patternoverlay.PatternOverlayPlugin... 2015-05-06T10:33:00.988866 tid8520 [IFO,App] Installing plugin org.micromanager.slideexplorer.SlideExplorerPlugin... 2015-05-06T10:33:00.988866 tid8520 [IFO,App] Added URL to system class loader: file:/C:/Users/HCFLAS~1/Desktop/Fiji.app/mmplugins/Beta/ 2015-05-06T10:33:00.988866 tid8520 [IFO,App] Added URL to system class loader: jar:file:C:\Users\HCFLAS~1\Desktop\Fiji.app\mmplugins\Beta\CRISPv2.jar!/ 2015-05-06T10:33:01.008866 tid8520 [IFO,App] Added URL to system class loader: jar:file:C:\Users\HCFLAS~1\Desktop\Fiji.app\mmplugins\Beta\SlideExplorer2.jar!/ 2015-05-06T10:33:02.108867 tid8520 [IFO,App] Installing plugin com.asiimaging.CRISPv2.ASI_CRISP_V2... 2015-05-06T10:33:02.108867 tid8520 [IFO,App] Installing plugin org.micromanager.SlideExplorer2... 2015-05-06T10:33:02.108867 tid8520 [IFO,App] Error: Plugin [org.micromanager.SlideExplorer2] has no menuName field 2015-05-06T10:33:02.108867 tid8520 [IFO,App] org.micromanager.SlideExplorer2 fails to implement static String tooltipDescription. 2015-05-06T10:33:02.108867 tid8520 [IFO,App] Added URL to system class loader: file:/C:/Users/HCFLAS~1/Desktop/Fiji.app/mmplugins/Developer_Tools/ 2015-05-06T10:33:02.108867 tid8520 [IFO,App] Added URL to system class loader: jar:file:C:\Users\HCFLAS~1\Desktop\Fiji.app\mmplugins\Developer_Tools\ClojureEditor.jar!/ 2015-05-06T10:33:02.108867 tid8520 [IFO,App] Added URL to system class loader: jar:file:C:\Users\HCFLAS~1\Desktop\Fiji.app\mmplugins\Developer_Tools\DLLAutoReloader.jar!/ 2015-05-06T10:33:02.188867 tid8520 [IFO,App] Added URL to system class loader: jar:file:C:\Users\HCFLAS~1\Desktop\Fiji.app\mmplugins\Developer_Tools\SequenceBufferMonitor.jar!/ 2015-05-06T10:33:02.198867 tid8520 [IFO,App] Installing plugin org.micromanager.clojureeditor.ClojureEditorPlugin... 2015-05-06T10:33:02.198867 tid8520 [IFO,App] Installing plugin org.micromanager.DLLAutoReloader... 2015-05-06T10:33:02.198867 tid8520 [IFO,App] Error: Plugin [org.micromanager.DLLAutoReloader] has no menuName field 2015-05-06T10:33:02.198867 tid8520 [IFO,App] org.micromanager.DLLAutoReloader fails to implement static String tooltipDescription. 2015-05-06T10:33:02.198867 tid8520 [IFO,App] Installing plugin org.micromanager.plugins.sequencebuffermonitor.SequenceBufferMonitor... 2015-05-06T10:33:02.198867 tid8520 [IFO,App] Added URL to system class loader: file:/C:/Users/HCFLAS~1/Desktop/Fiji.app/mmplugins/Device_Control/ 2015-05-06T10:33:02.198867 tid8520 [IFO,App] Added URL to system class loader: jar:file:C:\Users\HCFLAS~1\Desktop\Fiji.app\mmplugins\Device_Control\ASIdiSPIM.jar!/ 2015-05-06T10:33:02.358868 tid8520 [IFO,App] Added URL to system class loader: jar:file:C:\Users\HCFLAS~1\Desktop\Fiji.app\mmplugins\Device_Control\AutoLase.jar!/ 2015-05-06T10:33:02.388868 tid8520 [IFO,App] Added URL to system class loader: jar:file:C:\Users\HCFLAS~1\Desktop\Fiji.app\mmplugins\Device_Control\CRISP.jar!/ 2015-05-06T10:33:02.398868 tid8520 [IFO,App] Added URL to system class loader: jar:file:C:\Users\HCFLAS~1\Desktop\Fiji.app\mmplugins\Device_Control\MultiCamera.jar!/ 2015-05-06T10:33:02.408868 tid8520 [IFO,App] Added URL to system class loader: jar:file:C:\Users\HCFLAS~1\Desktop\Fiji.app\mmplugins\Device_Control\pgFocus.jar!/ 2015-05-06T10:33:02.428868 tid8520 [IFO,App] Added URL to system class loader: jar:file:C:\Users\HCFLAS~1\Desktop\Fiji.app\mmplugins\Device_Control\Projector.jar!/ 2015-05-06T10:33:02.498868 tid8520 [IFO,App] Added URL to system class loader: jar:file:C:\Users\HCFLAS~1\Desktop\Fiji.app\mmplugins\Device_Control\StageControl.jar!/ 2015-05-06T10:33:02.538868 tid8520 [IFO,App] Added URL to system class loader: jar:file:C:\Users\HCFLAS~1\Desktop\Fiji.app\mmplugins\Device_Control\WhiteBalance.jar!/ 2015-05-06T10:33:02.538868 tid8520 [IFO,App] Installing plugin org.micromanager.asidispim.ASIdiSPIM... 2015-05-06T10:33:02.538868 tid8520 [IFO,App] Installing plugin ch.epfl.leb.autolase.AutoLasePlugin... 2015-05-06T10:33:02.538868 tid8520 [IFO,App] Installing plugin org.micromanager.CRISP.CRISP... 2015-05-06T10:33:02.538868 tid8520 [IFO,App] Installing plugin org.micromanager.multicamera.MultiCamera... 2015-05-06T10:33:02.538868 tid8520 [IFO,App] Installing plugin edu.umassmed.pgfocus.pgFocus... 2015-05-06T10:33:02.538868 tid8520 [IFO,App] Installing plugin org.micromanager.projector.ProjectorPlugin... 2015-05-06T10:33:02.538868 tid8520 [IFO,App] Installing plugin org.micromanager.stagecontrol.StageControl... 2015-05-06T10:33:02.538868 tid8520 [IFO,App] Installing plugin PMQI.AutoWB... 2015-05-06T10:33:02.538868 tid8520 [IFO,App] Added URL to system class loader: file:/C:/Users/HCFLAS~1/Desktop/Fiji.app/mmplugins/On-The-Fly_Processors/ 2015-05-06T10:33:02.538868 tid8520 [IFO,App] Added URL to system class loader: jar:file:C:\Users\HCFLAS~1\Desktop\Fiji.app\mmplugins\On-The-Fly_Processors\ImageFlipper.jar!/ 2015-05-06T10:33:02.548868 tid8520 [IFO,App] Added URL to system class loader: jar:file:C:\Users\HCFLAS~1\Desktop\Fiji.app\mmplugins\On-The-Fly_Processors\MultiChannelShading.jar!/ 2015-05-06T10:33:02.568868 tid8520 [IFO,App] Added URL to system class loader: jar:file:C:\Users\HCFLAS~1\Desktop\Fiji.app\mmplugins\On-The-Fly_Processors\SplitView.jar!/ 2015-05-06T10:33:02.588868 tid8520 [IFO,App] Installing plugin org.micromanager.newimageflipper.NewTaggedImageFlipper... 2015-05-06T10:33:02.588868 tid8520 [IFO,App] Installing plugin org.micromanager.multichannelshading.MultiChannelShading... 2015-05-06T10:33:02.588868 tid8520 [IFO,App] Installing plugin org.micromanager.splitview.SplitView... 2015-05-06T10:33:02.608868 tid8520 [IFO,App] Added URL to system class loader: file:/C:/Users/HCFLAS~1/Desktop/Fiji.app/mmautofocus/ 2015-05-06T10:33:02.608868 tid8520 [IFO,App] Added URL to system class loader: jar:file:C:\Users\HCFLAS~1\Desktop\Fiji.app\mmautofocus\HardwareFocusExtender.jar!/ 2015-05-06T10:33:02.618868 tid8520 [IFO,App] Added URL to system class loader: jar:file:C:\Users\HCFLAS~1\Desktop\Fiji.app\mmautofocus\MMAutofocus.jar!/ 2015-05-06T10:33:02.618868 tid8520 [IFO,App] Added URL to system class loader: jar:file:C:\Users\HCFLAS~1\Desktop\Fiji.app\mmautofocus\MMAutofocusDuo.jar!/ 2015-05-06T10:33:02.618868 tid8520 [IFO,App] Added URL to system class loader: jar:file:C:\Users\HCFLAS~1\Desktop\Fiji.app\mmautofocus\MMAutofocusTB.jar!/ 2015-05-06T10:33:02.618868 tid8520 [IFO,App] Added URL to system class loader: jar:file:C:\Users\HCFLAS~1\Desktop\Fiji.app\mmautofocus\MMOughtaFocus.jar!/ 2015-05-06T10:33:02.628868 tid8520 [IFO,App] Attempting to install autofocus plugin HardwareFocusExtender 2015-05-06T10:33:02.628868 tid8520 [IFO,App] Attempting to install autofocus plugin Autofocus 2015-05-06T10:33:02.628868 tid8520 [IFO,App] Attempting to install autofocus plugin AutofocusDuo 2015-05-06T10:33:02.628868 tid8520 [IFO,App] Attempting to install autofocus plugin AutofocusTB 2015-05-06T10:33:02.628868 tid8520 [IFO,App] Attempting to install autofocus plugin OughtaFocus 2015-05-06T10:33:02.628868 tid9700 [IFO,App] Finished waiting for plugins to load 2015-05-06T10:33:02.638868 tid9700 [IFO,Core] Did unload all devices 2015-05-06T10:33:02.638868 tid9700 [IFO,Core] Did load device COM6 from SerialManager; label = COM6 2015-05-06T10:33:02.648868 tid9700 [IFO,Core] Did load device HamamatsuHam_DCAM from HamamatsuHam; label = Flash 4.0 2015-05-06T10:33:02.648868 tid9700 [IFO,Core] Did load device Picard Twister from PicardStage; label = Picard Twister 2015-05-06T10:33:02.648868 tid9700 [IFO,Core] Did load device Picard Z Stage from PicardStage; label = Picard Z Stage 2015-05-06T10:33:02.648868 tid9700 [IFO,Core] Did load device Picard XY Stage from PicardStage; label = Picard XY Stage 2015-05-06T10:33:02.648868 tid9700 [IFO,Core] Did load device CoherentObis from CoherentOBIS; label = 488nm/60mW 2015-05-06T10:33:02.738868 tid9700 [IFO,Core] Will initialize 6 devices 2015-05-06T10:33:02.738868 tid9700 [IFO,Core] Will initialize device COM6 2015-05-06T10:33:02.898868 tid9700 [IFO,Core] Did initialize device COM6 2015-05-06T10:33:02.898868 tid9700 [IFO,Core] Will initialize device Flash 4.0 2015-05-06T10:33:04.077934 tid9700 [IFO,Core] Did initialize device Flash 4.0 2015-05-06T10:33:04.077934 tid9700 [IFO,Core] Default camera set to Flash 4.0 2015-05-06T10:33:04.077934 tid9700 [IFO,Core] Will initialize device Picard Twister 2015-05-06T10:33:04.088935 tid9700 [IFO,Core] Did initialize device Picard Twister 2015-05-06T10:33:04.088935 tid9700 [IFO,Core] Will initialize device Picard Z Stage 2015-05-06T10:33:04.089935 tid9700 [IFO,Core] Did initialize device Picard Z Stage 2015-05-06T10:33:04.089935 tid9700 [IFO,Core] Will initialize device Picard XY Stage 2015-05-06T10:33:04.122937 tid9700 [IFO,Core] Did initialize device Picard XY Stage 2015-05-06T10:33:04.122937 tid9700 [IFO,Core] Default xy stage set to Picard XY Stage 2015-05-06T10:33:04.122937 tid9700 [IFO,Core] Will initialize device 488nm/60mW 2015-05-06T10:33:04.122937 tid9700 [IFO,dev:488nm/60mW] CoherentObis::Initialize()yes?? 2015-05-06T10:33:04.193941 tid9700 [IFO,Core] Did initialize device 488nm/60mW 2015-05-06T10:33:04.193941 tid9700 [IFO,Core] Default shutter set to 488nm/60mW 2015-05-06T10:33:04.193941 tid9700 [IFO,Core] Finished initializing 6 devices 2015-05-06T10:33:04.193941 tid9700 [IFO,Core] Default camera set to Flash 4.0 2015-05-06T10:33:04.193941 tid9700 [IFO,Core] Default stage set to Picard Z Stage 2015-05-06T10:33:04.253944 tid9700 [IFO,Core] Did update system state cache 2015-05-06T10:33:04.258944 tid9700 [IFO,App] Updating GUI; config pad = true; from cache = false 2015-05-06T10:33:04.349950 tid9700 [IFO,Core] Did update system state cache 2015-05-06T10:33:04.349950 tid9700 [IFO,App] Finished updating GUI 2015-05-06T10:33:04.349950 tid9700 [IFO,App] Startup script file (C:\Users\HCFlashDemo\Desktop\Fiji.app\MMStartup.bsh) not present. 2015-05-06T10:33:04.446955 tid9700 [IFO,App] Rebuilding config group table 2015-05-06T10:33:04.446955 tid9700 [IFO,App] Finished rebuilding config group table 2015-05-06T10:34:02.513276 tid9700 [IFO,App] Plugin command: Acquire SPIM image 2015-05-06T10:34:02.518277 tid9700 [IFO,Core] Will initialize 6 devices 2015-05-06T10:34:02.518277 tid9700 [IFO,Core] Will initialize device COM6 2015-05-06T10:34:02.518277 tid9700 [IFO,Core] Did initialize device COM6 2015-05-06T10:34:02.518277 tid9700 [IFO,Core] Will initialize device Flash 4.0 2015-05-06T10:34:02.518277 tid9700 [IFO,Core] Did initialize device Flash 4.0 2015-05-06T10:34:02.518277 tid9700 [IFO,Core] Default camera set to Flash 4.0 2015-05-06T10:34:02.518277 tid9700 [IFO,Core] Will initialize device Picard Twister 2015-05-06T10:34:02.548278 tid9700 [IFO,Core] Did initialize device Picard Twister 2015-05-06T10:34:02.548278 tid9700 [IFO,Core] Will initialize device Picard Z Stage 2015-05-06T10:34:02.549278 tid9700 [IFO,Core] Did initialize device Picard Z Stage 2015-05-06T10:34:02.549278 tid9700 [IFO,Core] Will initialize device Picard XY Stage 2015-05-06T10:34:02.582280 tid9700 [IFO,Core] Did initialize device Picard XY Stage 2015-05-06T10:34:02.582280 tid9700 [IFO,Core] Default xy stage set to Picard XY Stage 2015-05-06T10:34:02.582280 tid9700 [IFO,Core] Will initialize device 488nm/60mW 2015-05-06T10:34:02.582280 tid9700 [IFO,dev:488nm/60mW] CoherentObis::Initialize()yes?? 2015-05-06T10:34:02.659285 tid9700 [IFO,Core] Did initialize device 488nm/60mW 2015-05-06T10:34:02.659285 tid9700 [IFO,Core] Default shutter set to 488nm/60mW 2015-05-06T10:34:02.659285 tid9700 [IFO,Core] Finished initializing 6 devices 2015-05-06T10:34:02.659285 tid9700 [IFO,App] Defined uncalibrated pixel size (1:1). 2015-05-06T10:35:17.816583 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:35:17.816583 tid7184 [IFO,App] Couldn't get Y position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getYPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getYPosition(CMMCore.java:1186) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:78) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1263) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:18.316612 tid9700 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:35:18.316612 tid7184 [ERR,Core] Error occurred in device Picard Z Stage: Error in device "Picard Z Stage": Unable to communicate with the device. (35) 2015-05-06T10:35:18.316612 tid7184 [IFO,App] Couldn't get stage position for Picard Z Stage [ ] java.lang.Exception: Error in device "Picard Z Stage": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1266) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:18.318612 tid9700 [IFO,App] Couldn't get X position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[AWT-EventQueue-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getXPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getXPosition(CMMCore.java:1182) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:76) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1260) [ ] at spim.SPIMAcquisition.tryUpdateSliderPositions(SPIMAcquisition.java:1245) [ ] at spim.SPIMAcquisition$18.windowGainedFocus(SPIMAcquisition.java:1028) [ ] at java.awt.Window.processWindowFocusEvent(Window.java:1912) [ ] at java.awt.Window.processEvent(Window.java:1827) [ ] at java.awt.Component.dispatchEventImpl(Component.java:4652) [ ] at java.awt.Container.dispatchEventImpl(Container.java:2099) [ ] at java.awt.Window.dispatchEventImpl(Window.java:2478) [ ] at java.awt.Component.dispatchEvent(Component.java:4482) [ ] at java.awt.KeyboardFocusManager.redispatchEvent(KeyboardFocusManager.java:1850) [ ] at java.awt.DefaultKeyboardFocusManager.typeAheadAssertions(DefaultKeyboardFocusManager.java:910) [ ] at java.awt.DefaultKeyboardFocusManager.dispatchEvent(DefaultKeyboardFocusManager.java:371) [ ] at java.awt.Component.dispatchEventImpl(Component.java:4524) [ ] at java.awt.Container.dispatchEventImpl(Container.java:2099) [ ] at java.awt.Window.dispatchEventImpl(Window.java:2478) [ ] at java.awt.Component.dispatchEvent(Component.java:4482) [ ] at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:644) [ ] at java.awt.EventQueue.access$000(EventQueue.java:85) [ ] at java.awt.EventQueue$1.run(EventQueue.java:603) [ ] at java.awt.EventQueue$1.run(EventQueue.java:601) [ ] at java.security.AccessController.doPrivileged(Native Method) [ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87) [ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98) [ ] at java.awt.EventQueue$2.run(EventQueue.java:617) [ ] at java.awt.EventQueue$2.run(EventQueue.java:615) [ ] at java.security.AccessController.doPrivileged(Native Method) [ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87) [ ] at java.awt.EventQueue.dispatchEvent(EventQueue.java:614) [ ] at java.awt.SequencedEvent.dispatch(SequencedEvent.java:101) [ ] at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:642) [ ] at java.awt.EventQueue.access$000(EventQueue.java:85) [ ] at java.awt.EventQueue$1.run(EventQueue.java:603) [ ] at java.awt.EventQueue$1.run(EventQueue.java:601) [ ] at java.security.AccessController.doPrivileged(Native Method) [ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87) [ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98) [ ] at java.awt.EventQueue$2.run(EventQueue.java:617) [ ] at java.awt.EventQueue$2.run(EventQueue.java:615) [ ] at java.security.AccessController.doPrivileged(Native Method) [ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87) [ ] at java.awt.EventQueue.dispatchEvent(EventQueue.java:614) [ ] at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269) [ ] at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184) [ ] at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174) [ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169) [ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161) [ ] at java.awt.EventDispatchThread.run(EventDispatchThread.java:122) 2015-05-06T10:35:18.816641 tid7184 [ERR,Core] Error occurred in device Picard Twister: Error in device "Picard Twister": Unable to communicate with the device. (35) 2015-05-06T10:35:18.816641 tid7184 [IFO,App] Couldn't get stage position for Picard Twister [ ] java.lang.Exception: Error in device "Picard Twister": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.setup.PicardTwister.getPosition(PicardTwister.java:27) [ ] at spim.setup.SPIMSetup.getAngle(SPIMSetup.java:222) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1269) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:19.316669 tid9700 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:35:19.316669 tid9700 [IFO,App] Couldn't get Y position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[AWT-EventQueue-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getYPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getYPosition(CMMCore.java:1186) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:78) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1263) [ ] at spim.SPIMAcquisition.tryUpdateSliderPositions(SPIMAcquisition.java:1245) [ ] at spim.SPIMAcquisition$18.windowGainedFocus(SPIMAcquisition.java:1028) [ ] at java.awt.Window.processWindowFocusEvent(Window.java:1912) [ ] at java.awt.Window.processEvent(Window.java:1827) [ ] at java.awt.Component.dispatchEventImpl(Component.java:4652) [ ] at java.awt.Container.dispatchEventImpl(Container.java:2099) [ ] at java.awt.Window.dispatchEventImpl(Window.java:2478) [ ] at java.awt.Component.dispatchEvent(Component.java:4482) [ ] at java.awt.KeyboardFocusManager.redispatchEvent(KeyboardFocusManager.java:1850) [ ] at java.awt.DefaultKeyboardFocusManager.typeAheadAssertions(DefaultKeyboardFocusManager.java:910) [ ] at java.awt.DefaultKeyboardFocusManager.dispatchEvent(DefaultKeyboardFocusManager.java:371) [ ] at java.awt.Component.dispatchEventImpl(Component.java:4524) [ ] at java.awt.Container.dispatchEventImpl(Container.java:2099) [ ] at java.awt.Window.dispatchEventImpl(Window.java:2478) [ ] at java.awt.Component.dispatchEvent(Component.java:4482) [ ] at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:644) [ ] at java.awt.EventQueue.access$000(EventQueue.java:85) [ ] at java.awt.EventQueue$1.run(EventQueue.java:603) [ ] at java.awt.EventQueue$1.run(EventQueue.java:601) [ ] at java.security.AccessController.doPrivileged(Native Method) [ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87) [ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98) [ ] at java.awt.EventQueue$2.run(EventQueue.java:617) [ ] at java.awt.EventQueue$2.run(EventQueue.java:615) [ ] at java.security.AccessController.doPrivileged(Native Method) [ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87) [ ] at java.awt.EventQueue.dispatchEvent(EventQueue.java:614) [ ] at java.awt.SequencedEvent.dispatch(SequencedEvent.java:101) [ ] at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:642) [ ] at java.awt.EventQueue.access$000(EventQueue.java:85) [ ] at java.awt.EventQueue$1.run(EventQueue.java:603) [ ] at java.awt.EventQueue$1.run(EventQueue.java:601) [ ] at java.security.AccessController.doPrivileged(Native Method) [ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87) [ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98) [ ] at java.awt.EventQueue$2.run(EventQueue.java:617) [ ] at java.awt.EventQueue$2.run(EventQueue.java:615) [ ] at java.security.AccessController.doPrivileged(Native Method) [ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87) [ ] at java.awt.EventQueue.dispatchEvent(EventQueue.java:614) [ ] at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269) [ ] at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184) [ ] at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174) [ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169) [ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161) [ ] at java.awt.EventDispatchThread.run(EventDispatchThread.java:122) 2015-05-06T10:35:19.816698 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:35:19.816698 tid9700 [ERR,Core] Error occurred in device Picard Z Stage: Error in device "Picard Z Stage": Unable to communicate with the device. (35) 2015-05-06T10:35:19.816698 tid7184 [IFO,App] Couldn't get X position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getXPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getXPosition(CMMCore.java:1182) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:76) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1260) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:19.816698 tid9700 [IFO,App] Couldn't get stage position for Picard Z Stage [ ] java.lang.Exception: Error in device "Picard Z Stage": Unable to communicate with the device. (35) in Thread[AWT-EventQueue-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1266) [ ] at spim.SPIMAcquisition.tryUpdateSliderPositions(SPIMAcquisition.java:1245) [ ] at spim.SPIMAcquisition$18.windowGainedFocus(SPIMAcquisition.java:1028) [ ] at java.awt.Window.processWindowFocusEvent(Window.java:1912) [ ] at java.awt.Window.processEvent(Window.java:1827) [ ] at java.awt.Component.dispatchEventImpl(Component.java:4652) [ ] at java.awt.Container.dispatchEventImpl(Container.java:2099) [ ] at java.awt.Window.dispatchEventImpl(Window.java:2478) [ ] at java.awt.Component.dispatchEvent(Component.java:4482) [ ] at java.awt.KeyboardFocusManager.redispatchEvent(KeyboardFocusManager.java:1850) [ ] at java.awt.DefaultKeyboardFocusManager.typeAheadAssertions(DefaultKeyboardFocusManager.java:910) [ ] at java.awt.DefaultKeyboardFocusManager.dispatchEvent(DefaultKeyboardFocusManager.java:371) [ ] at java.awt.Component.dispatchEventImpl(Component.java:4524) [ ] at java.awt.Container.dispatchEventImpl(Container.java:2099) [ ] at java.awt.Window.dispatchEventImpl(Window.java:2478) [ ] at java.awt.Component.dispatchEvent(Component.java:4482) [ ] at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:644) [ ] at java.awt.EventQueue.access$000(EventQueue.java:85) [ ] at java.awt.EventQueue$1.run(EventQueue.java:603) [ ] at java.awt.EventQueue$1.run(EventQueue.java:601) [ ] at java.security.AccessController.doPrivileged(Native Method) [ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87) [ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98) [ ] at java.awt.EventQueue$2.run(EventQueue.java:617) [ ] at java.awt.EventQueue$2.run(EventQueue.java:615) [ ] at java.security.AccessController.doPrivileged(Native Method) [ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87) [ ] at java.awt.EventQueue.dispatchEvent(EventQueue.java:614) [ ] at java.awt.SequencedEvent.dispatch(SequencedEvent.java:101) [ ] at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:642) [ ] at java.awt.EventQueue.access$000(EventQueue.java:85) [ ] at java.awt.EventQueue$1.run(EventQueue.java:603) [ ] at java.awt.EventQueue$1.run(EventQueue.java:601) [ ] at java.security.AccessController.doPrivileged(Native Method) [ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87) [ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98) [ ] at java.awt.EventQueue$2.run(EventQueue.java:617) [ ] at java.awt.EventQueue$2.run(EventQueue.java:615) [ ] at java.security.AccessController.doPrivileged(Native Method) [ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87) [ ] at java.awt.EventQueue.dispatchEvent(EventQueue.java:614) [ ] at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269) [ ] at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184) [ ] at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174) [ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169) [ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161) [ ] at java.awt.EventDispatchThread.run(EventDispatchThread.java:122) 2015-05-06T10:35:20.316726 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:35:20.316726 tid7184 [IFO,App] Couldn't get Y position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getYPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getYPosition(CMMCore.java:1186) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:78) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1263) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:20.816755 tid9700 [ERR,Core] Error occurred in device Picard Twister: Error in device "Picard Twister": Unable to communicate with the device. (35) 2015-05-06T10:35:20.816755 tid7184 [ERR,Core] Error occurred in device Picard Z Stage: Error in device "Picard Z Stage": Unable to communicate with the device. (35) 2015-05-06T10:35:20.816755 tid7184 [IFO,App] Couldn't get stage position for Picard Z Stage [ ] java.lang.Exception: Error in device "Picard Z Stage": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1266) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:20.816755 tid9700 [IFO,App] Couldn't get stage position for Picard Twister [ ] java.lang.Exception: Error in device "Picard Twister": Unable to communicate with the device. (35) in Thread[AWT-EventQueue-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.setup.PicardTwister.getPosition(PicardTwister.java:27) [ ] at spim.setup.SPIMSetup.getAngle(SPIMSetup.java:222) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1269) [ ] at spim.SPIMAcquisition.tryUpdateSliderPositions(SPIMAcquisition.java:1245) [ ] at spim.SPIMAcquisition$18.windowGainedFocus(SPIMAcquisition.java:1028) [ ] at java.awt.Window.processWindowFocusEvent(Window.java:1912) [ ] at java.awt.Window.processEvent(Window.java:1827) [ ] at java.awt.Component.dispatchEventImpl(Component.java:4652) [ ] at java.awt.Container.dispatchEventImpl(Container.java:2099) [ ] at java.awt.Window.dispatchEventImpl(Window.java:2478) [ ] at java.awt.Component.dispatchEvent(Component.java:4482) [ ] at java.awt.KeyboardFocusManager.redispatchEvent(KeyboardFocusManager.java:1850) [ ] at java.awt.DefaultKeyboardFocusManager.typeAheadAssertions(DefaultKeyboardFocusManager.java:910) [ ] at java.awt.DefaultKeyboardFocusManager.dispatchEvent(DefaultKeyboardFocusManager.java:371) [ ] at java.awt.Component.dispatchEventImpl(Component.java:4524) [ ] at java.awt.Container.dispatchEventImpl(Container.java:2099) [ ] at java.awt.Window.dispatchEventImpl(Window.java:2478) [ ] at java.awt.Component.dispatchEvent(Component.java:4482) [ ] at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:644) [ ] at java.awt.EventQueue.access$000(EventQueue.java:85) [ ] at java.awt.EventQueue$1.run(EventQueue.java:603) [ ] at java.awt.EventQueue$1.run(EventQueue.java:601) [ ] at java.security.AccessController.doPrivileged(Native Method) [ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87) [ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98) [ ] at java.awt.EventQueue$2.run(EventQueue.java:617) [ ] at java.awt.EventQueue$2.run(EventQueue.java:615) [ ] at java.security.AccessController.doPrivileged(Native Method) [ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87) [ ] at java.awt.EventQueue.dispatchEvent(EventQueue.java:614) [ ] at java.awt.SequencedEvent.dispatch(SequencedEvent.java:101) [ ] at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:642) [ ] at java.awt.EventQueue.access$000(EventQueue.java:85) [ ] at java.awt.EventQueue$1.run(EventQueue.java:603) [ ] at java.awt.EventQueue$1.run(EventQueue.java:601) [ ] at java.security.AccessController.doPrivileged(Native Method) [ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87) [ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98) [ ] at java.awt.EventQueue$2.run(EventQueue.java:617) [ ] at java.awt.EventQueue$2.run(EventQueue.java:615) [ ] at java.security.AccessController.doPrivileged(Native Method) [ ] at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87) [ ] at java.awt.EventQueue.dispatchEvent(EventQueue.java:614) [ ] at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269) [ ] at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184) [ ] at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174) [ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169) [ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161) [ ] at java.awt.EventDispatchThread.run(EventDispatchThread.java:122) 2015-05-06T10:35:21.316784 tid7184 [ERR,Core] Error occurred in device Picard Twister: Error in device "Picard Twister": Unable to communicate with the device. (35) 2015-05-06T10:35:21.316784 tid7184 [IFO,App] Couldn't get stage position for Picard Twister [ ] java.lang.Exception: Error in device "Picard Twister": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.setup.PicardTwister.getPosition(PicardTwister.java:27) [ ] at spim.setup.SPIMSetup.getAngle(SPIMSetup.java:222) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1269) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:21.821813 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:35:21.821813 tid7184 [IFO,App] Couldn't get X position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getXPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getXPosition(CMMCore.java:1182) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:76) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1260) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:22.321841 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:35:22.321841 tid7184 [IFO,App] Couldn't get Y position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getYPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getYPosition(CMMCore.java:1186) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:78) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1263) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:22.321841 tid7184 [ERR,Core] Error occurred in device Picard Z Stage: Error in device "Picard Z Stage": Unable to communicate with the device. (35) 2015-05-06T10:35:22.321841 tid7184 [IFO,App] Couldn't get stage position for Picard Z Stage [ ] java.lang.Exception: Error in device "Picard Z Stage": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1266) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:22.821870 tid7184 [ERR,Core] Error occurred in device Picard Twister: Error in device "Picard Twister": Unable to communicate with the device. (35) 2015-05-06T10:35:22.821870 tid7184 [IFO,App] Couldn't get stage position for Picard Twister [ ] java.lang.Exception: Error in device "Picard Twister": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.setup.PicardTwister.getPosition(PicardTwister.java:27) [ ] at spim.setup.SPIMSetup.getAngle(SPIMSetup.java:222) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1269) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:23.326899 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:35:23.326899 tid7184 [IFO,App] Couldn't get X position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getXPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getXPosition(CMMCore.java:1182) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:76) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1260) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:23.826927 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:35:23.826927 tid7184 [IFO,App] Couldn't get Y position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getYPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getYPosition(CMMCore.java:1186) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:78) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1263) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:23.826927 tid7184 [ERR,Core] Error occurred in device Picard Z Stage: Error in device "Picard Z Stage": Unable to communicate with the device. (35) 2015-05-06T10:35:23.826927 tid7184 [IFO,App] Couldn't get stage position for Picard Z Stage [ ] java.lang.Exception: Error in device "Picard Z Stage": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1266) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:24.326956 tid7184 [ERR,Core] Error occurred in device Picard Twister: Error in device "Picard Twister": Unable to communicate with the device. (35) 2015-05-06T10:35:24.326956 tid7184 [IFO,App] Couldn't get stage position for Picard Twister [ ] java.lang.Exception: Error in device "Picard Twister": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.setup.PicardTwister.getPosition(PicardTwister.java:27) [ ] at spim.setup.SPIMSetup.getAngle(SPIMSetup.java:222) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1269) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:24.830985 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:35:24.830985 tid7184 [IFO,App] Couldn't get X position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getXPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getXPosition(CMMCore.java:1182) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:76) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1260) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:25.331013 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:35:25.331013 tid7184 [IFO,App] Couldn't get Y position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getYPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getYPosition(CMMCore.java:1186) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:78) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1263) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:25.331013 tid7184 [ERR,Core] Error occurred in device Picard Z Stage: Error in device "Picard Z Stage": Unable to communicate with the device. (35) 2015-05-06T10:35:25.331013 tid7184 [IFO,App] Couldn't get stage position for Picard Z Stage [ ] java.lang.Exception: Error in device "Picard Z Stage": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1266) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:25.831042 tid7184 [ERR,Core] Error occurred in device Picard Twister: Error in device "Picard Twister": Unable to communicate with the device. (35) 2015-05-06T10:35:25.831042 tid7184 [IFO,App] Couldn't get stage position for Picard Twister [ ] java.lang.Exception: Error in device "Picard Twister": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.setup.PicardTwister.getPosition(PicardTwister.java:27) [ ] at spim.setup.SPIMSetup.getAngle(SPIMSetup.java:222) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1269) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:26.335071 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:35:26.335071 tid7184 [IFO,App] Couldn't get X position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getXPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getXPosition(CMMCore.java:1182) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:76) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1260) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:26.835099 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:35:26.835099 tid7184 [IFO,App] Couldn't get Y position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getYPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getYPosition(CMMCore.java:1186) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:78) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1263) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:26.835099 tid7184 [ERR,Core] Error occurred in device Picard Z Stage: Error in device "Picard Z Stage": Unable to communicate with the device. (35) 2015-05-06T10:35:26.835099 tid7184 [IFO,App] Couldn't get stage position for Picard Z Stage [ ] java.lang.Exception: Error in device "Picard Z Stage": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1266) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:27.335128 tid7184 [ERR,Core] Error occurred in device Picard Twister: Error in device "Picard Twister": Unable to communicate with the device. (35) 2015-05-06T10:35:27.335128 tid7184 [IFO,App] Couldn't get stage position for Picard Twister [ ] java.lang.Exception: Error in device "Picard Twister": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.setup.PicardTwister.getPosition(PicardTwister.java:27) [ ] at spim.setup.SPIMSetup.getAngle(SPIMSetup.java:222) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1269) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:27.840157 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:35:27.840157 tid7184 [IFO,App] Couldn't get X position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getXPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getXPosition(CMMCore.java:1182) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:76) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1260) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:28.340185 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:35:28.340185 tid7184 [IFO,App] Couldn't get Y position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getYPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getYPosition(CMMCore.java:1186) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:78) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1263) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:28.340185 tid7184 [ERR,Core] Error occurred in device Picard Z Stage: Error in device "Picard Z Stage": Unable to communicate with the device. (35) 2015-05-06T10:35:28.340185 tid7184 [IFO,App] Couldn't get stage position for Picard Z Stage [ ] java.lang.Exception: Error in device "Picard Z Stage": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1266) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:28.840214 tid7184 [ERR,Core] Error occurred in device Picard Twister: Error in device "Picard Twister": Unable to communicate with the device. (35) 2015-05-06T10:35:28.840214 tid7184 [IFO,App] Couldn't get stage position for Picard Twister [ ] java.lang.Exception: Error in device "Picard Twister": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.setup.PicardTwister.getPosition(PicardTwister.java:27) [ ] at spim.setup.SPIMSetup.getAngle(SPIMSetup.java:222) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1269) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:29.344243 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:35:29.344243 tid7184 [IFO,App] Couldn't get X position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getXPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getXPosition(CMMCore.java:1182) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:76) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1260) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:29.844271 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:35:29.846272 tid7184 [IFO,App] Couldn't get Y position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getYPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getYPosition(CMMCore.java:1186) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:78) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1263) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:29.846272 tid7184 [ERR,Core] Error occurred in device Picard Z Stage: Error in device "Picard Z Stage": Unable to communicate with the device. (35) 2015-05-06T10:35:29.846272 tid7184 [IFO,App] Couldn't get stage position for Picard Z Stage [ ] java.lang.Exception: Error in device "Picard Z Stage": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1266) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:30.346300 tid7184 [ERR,Core] Error occurred in device Picard Twister: Error in device "Picard Twister": Unable to communicate with the device. (35) 2015-05-06T10:35:30.346300 tid7184 [IFO,App] Couldn't get stage position for Picard Twister [ ] java.lang.Exception: Error in device "Picard Twister": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.setup.PicardTwister.getPosition(PicardTwister.java:27) [ ] at spim.setup.SPIMSetup.getAngle(SPIMSetup.java:222) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1269) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:30.851329 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:35:30.851329 tid7184 [IFO,App] Couldn't get X position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getXPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getXPosition(CMMCore.java:1182) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:76) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1260) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:31.351358 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:35:31.351358 tid7184 [IFO,App] Couldn't get Y position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getYPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getYPosition(CMMCore.java:1186) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:78) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1263) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:31.351358 tid7184 [ERR,Core] Error occurred in device Picard Z Stage: Error in device "Picard Z Stage": Unable to communicate with the device. (35) 2015-05-06T10:35:31.351358 tid7184 [IFO,App] Couldn't get stage position for Picard Z Stage [ ] java.lang.Exception: Error in device "Picard Z Stage": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1266) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:31.851386 tid7184 [ERR,Core] Error occurred in device Picard Twister: Error in device "Picard Twister": Unable to communicate with the device. (35) 2015-05-06T10:35:31.851386 tid7184 [IFO,App] Couldn't get stage position for Picard Twister [ ] java.lang.Exception: Error in device "Picard Twister": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.setup.PicardTwister.getPosition(PicardTwister.java:27) [ ] at spim.setup.SPIMSetup.getAngle(SPIMSetup.java:222) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1269) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:32.355415 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:35:32.355415 tid7184 [IFO,App] Couldn't get X position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getXPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getXPosition(CMMCore.java:1182) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:76) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1260) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:32.855444 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:35:32.855444 tid7184 [IFO,App] Couldn't get Y position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getYPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getYPosition(CMMCore.java:1186) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:78) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1263) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:32.855444 tid7184 [ERR,Core] Error occurred in device Picard Z Stage: Error in device "Picard Z Stage": Unable to communicate with the device. (35) 2015-05-06T10:35:32.855444 tid7184 [IFO,App] Couldn't get stage position for Picard Z Stage [ ] java.lang.Exception: Error in device "Picard Z Stage": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1266) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:33.355472 tid7184 [ERR,Core] Error occurred in device Picard Twister: Error in device "Picard Twister": Unable to communicate with the device. (35) 2015-05-06T10:35:33.355472 tid7184 [IFO,App] Couldn't get stage position for Picard Twister [ ] java.lang.Exception: Error in device "Picard Twister": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.setup.PicardTwister.getPosition(PicardTwister.java:27) [ ] at spim.setup.SPIMSetup.getAngle(SPIMSetup.java:222) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1269) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:33.860501 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:35:33.860501 tid7184 [IFO,App] Couldn't get X position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getXPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getXPosition(CMMCore.java:1182) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:76) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1260) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:34.360530 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:35:34.360530 tid7184 [IFO,App] Couldn't get Y position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getYPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getYPosition(CMMCore.java:1186) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:78) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1263) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:34.360530 tid7184 [ERR,Core] Error occurred in device Picard Z Stage: Error in device "Picard Z Stage": Unable to communicate with the device. (35) 2015-05-06T10:35:34.360530 tid7184 [IFO,App] Couldn't get stage position for Picard Z Stage [ ] java.lang.Exception: Error in device "Picard Z Stage": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1266) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:34.860558 tid7184 [ERR,Core] Error occurred in device Picard Twister: Error in device "Picard Twister": Unable to communicate with the device. (35) 2015-05-06T10:35:34.860558 tid7184 [IFO,App] Couldn't get stage position for Picard Twister [ ] java.lang.Exception: Error in device "Picard Twister": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.setup.PicardTwister.getPosition(PicardTwister.java:27) [ ] at spim.setup.SPIMSetup.getAngle(SPIMSetup.java:222) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1269) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:35.365587 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:35:35.365587 tid7184 [IFO,App] Couldn't get X position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getXPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getXPosition(CMMCore.java:1182) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:76) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1260) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:35.865616 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:35:35.865616 tid7184 [IFO,App] Couldn't get Y position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getYPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getYPosition(CMMCore.java:1186) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:78) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1263) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:35.865616 tid7184 [ERR,Core] Error occurred in device Picard Z Stage: Error in device "Picard Z Stage": Unable to communicate with the device. (35) 2015-05-06T10:35:35.865616 tid7184 [IFO,App] Couldn't get stage position for Picard Z Stage [ ] java.lang.Exception: Error in device "Picard Z Stage": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1266) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:36.365644 tid7184 [ERR,Core] Error occurred in device Picard Twister: Error in device "Picard Twister": Unable to communicate with the device. (35) 2015-05-06T10:35:36.365644 tid7184 [IFO,App] Couldn't get stage position for Picard Twister [ ] java.lang.Exception: Error in device "Picard Twister": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.setup.PicardTwister.getPosition(PicardTwister.java:27) [ ] at spim.setup.SPIMSetup.getAngle(SPIMSetup.java:222) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1269) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:36.870673 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:35:36.870673 tid7184 [IFO,App] Couldn't get X position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getXPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getXPosition(CMMCore.java:1182) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:76) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1260) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:37.370702 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:35:37.370702 tid7184 [IFO,App] Couldn't get Y position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getYPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getYPosition(CMMCore.java:1186) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:78) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1263) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:37.370702 tid7184 [ERR,Core] Error occurred in device Picard Z Stage: Error in device "Picard Z Stage": Unable to communicate with the device. (35) 2015-05-06T10:35:37.370702 tid7184 [IFO,App] Couldn't get stage position for Picard Z Stage [ ] java.lang.Exception: Error in device "Picard Z Stage": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1266) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:37.870731 tid7184 [ERR,Core] Error occurred in device Picard Twister: Error in device "Picard Twister": Unable to communicate with the device. (35) 2015-05-06T10:35:37.870731 tid7184 [IFO,App] Couldn't get stage position for Picard Twister [ ] java.lang.Exception: Error in device "Picard Twister": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.setup.PicardTwister.getPosition(PicardTwister.java:27) [ ] at spim.setup.SPIMSetup.getAngle(SPIMSetup.java:222) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1269) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:38.374759 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:35:38.374759 tid7184 [IFO,App] Couldn't get X position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getXPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getXPosition(CMMCore.java:1182) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:76) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1260) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:38.874788 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:35:38.874788 tid7184 [IFO,App] Couldn't get Y position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getYPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getYPosition(CMMCore.java:1186) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:78) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1263) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:38.874788 tid7184 [ERR,Core] Error occurred in device Picard Z Stage: Error in device "Picard Z Stage": Unable to communicate with the device. (35) 2015-05-06T10:35:38.874788 tid7184 [IFO,App] Couldn't get stage position for Picard Z Stage [ ] java.lang.Exception: Error in device "Picard Z Stage": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1266) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:39.374817 tid7184 [ERR,Core] Error occurred in device Picard Twister: Error in device "Picard Twister": Unable to communicate with the device. (35) 2015-05-06T10:35:39.374817 tid7184 [IFO,App] Couldn't get stage position for Picard Twister [ ] java.lang.Exception: Error in device "Picard Twister": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.setup.PicardTwister.getPosition(PicardTwister.java:27) [ ] at spim.setup.SPIMSetup.getAngle(SPIMSetup.java:222) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1269) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:39.879845 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:35:39.879845 tid7184 [IFO,App] Couldn't get X position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getXPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getXPosition(CMMCore.java:1182) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:76) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1260) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:40.379874 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:35:40.379874 tid7184 [IFO,App] Couldn't get Y position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getYPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getYPosition(CMMCore.java:1186) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:78) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1263) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:40.379874 tid7184 [ERR,Core] Error occurred in device Picard Z Stage: Error in device "Picard Z Stage": Unable to communicate with the device. (35) 2015-05-06T10:35:40.379874 tid7184 [IFO,App] Couldn't get stage position for Picard Z Stage [ ] java.lang.Exception: Error in device "Picard Z Stage": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1266) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:40.879903 tid7184 [ERR,Core] Error occurred in device Picard Twister: Error in device "Picard Twister": Unable to communicate with the device. (35) 2015-05-06T10:35:40.879903 tid7184 [IFO,App] Couldn't get stage position for Picard Twister [ ] java.lang.Exception: Error in device "Picard Twister": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.setup.PicardTwister.getPosition(PicardTwister.java:27) [ ] at spim.setup.SPIMSetup.getAngle(SPIMSetup.java:222) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1269) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:41.384932 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:35:41.384932 tid7184 [IFO,App] Couldn't get X position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getXPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getXPosition(CMMCore.java:1182) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:76) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1260) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:41.884960 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:35:41.884960 tid7184 [IFO,App] Couldn't get Y position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getYPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getYPosition(CMMCore.java:1186) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:78) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1263) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:41.884960 tid7184 [ERR,Core] Error occurred in device Picard Z Stage: Error in device "Picard Z Stage": Unable to communicate with the device. (35) 2015-05-06T10:35:41.884960 tid7184 [IFO,App] Couldn't get stage position for Picard Z Stage [ ] java.lang.Exception: Error in device "Picard Z Stage": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1266) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:42.384989 tid7184 [ERR,Core] Error occurred in device Picard Twister: Error in device "Picard Twister": Unable to communicate with the device. (35) 2015-05-06T10:35:42.384989 tid7184 [IFO,App] Couldn't get stage position for Picard Twister [ ] java.lang.Exception: Error in device "Picard Twister": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.setup.PicardTwister.getPosition(PicardTwister.java:27) [ ] at spim.setup.SPIMSetup.getAngle(SPIMSetup.java:222) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1269) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:42.890018 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:35:42.890018 tid7184 [IFO,App] Couldn't get X position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getXPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getXPosition(CMMCore.java:1182) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:76) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1260) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:43.390046 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:35:43.390046 tid7184 [IFO,App] Couldn't get Y position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getYPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getYPosition(CMMCore.java:1186) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:78) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1263) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:43.390046 tid7184 [ERR,Core] Error occurred in device Picard Z Stage: Error in device "Picard Z Stage": Unable to communicate with the device. (35) 2015-05-06T10:35:43.390046 tid7184 [IFO,App] Couldn't get stage position for Picard Z Stage [ ] java.lang.Exception: Error in device "Picard Z Stage": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1266) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:43.890075 tid7184 [ERR,Core] Error occurred in device Picard Twister: Error in device "Picard Twister": Unable to communicate with the device. (35) 2015-05-06T10:35:43.890075 tid7184 [IFO,App] Couldn't get stage position for Picard Twister [ ] java.lang.Exception: Error in device "Picard Twister": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.setup.PicardTwister.getPosition(PicardTwister.java:27) [ ] at spim.setup.SPIMSetup.getAngle(SPIMSetup.java:222) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1269) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:44.394104 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:35:44.394104 tid7184 [IFO,App] Couldn't get X position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getXPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getXPosition(CMMCore.java:1182) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:76) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1260) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:44.894132 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:35:44.894132 tid7184 [IFO,App] Couldn't get Y position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getYPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getYPosition(CMMCore.java:1186) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:78) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1263) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:44.894132 tid7184 [ERR,Core] Error occurred in device Picard Z Stage: Error in device "Picard Z Stage": Unable to communicate with the device. (35) 2015-05-06T10:35:44.894132 tid7184 [IFO,App] Couldn't get stage position for Picard Z Stage [ ] java.lang.Exception: Error in device "Picard Z Stage": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1266) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:45.394161 tid7184 [ERR,Core] Error occurred in device Picard Twister: Error in device "Picard Twister": Unable to communicate with the device. (35) 2015-05-06T10:35:45.394161 tid7184 [IFO,App] Couldn't get stage position for Picard Twister [ ] java.lang.Exception: Error in device "Picard Twister": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.setup.PicardTwister.getPosition(PicardTwister.java:27) [ ] at spim.setup.SPIMSetup.getAngle(SPIMSetup.java:222) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1269) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:45.899190 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:35:45.899190 tid7184 [IFO,App] Couldn't get X position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getXPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getXPosition(CMMCore.java:1182) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:76) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1260) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:46.399218 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:35:46.399218 tid7184 [IFO,App] Couldn't get Y position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getYPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getYPosition(CMMCore.java:1186) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:78) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1263) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:46.399218 tid7184 [ERR,Core] Error occurred in device Picard Z Stage: Error in device "Picard Z Stage": Unable to communicate with the device. (35) 2015-05-06T10:35:46.399218 tid7184 [IFO,App] Couldn't get stage position for Picard Z Stage [ ] java.lang.Exception: Error in device "Picard Z Stage": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1266) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:46.899247 tid7184 [ERR,Core] Error occurred in device Picard Twister: Error in device "Picard Twister": Unable to communicate with the device. (35) 2015-05-06T10:35:46.899247 tid7184 [IFO,App] Couldn't get stage position for Picard Twister [ ] java.lang.Exception: Error in device "Picard Twister": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.setup.PicardTwister.getPosition(PicardTwister.java:27) [ ] at spim.setup.SPIMSetup.getAngle(SPIMSetup.java:222) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1269) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:47.404276 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:35:47.404276 tid7184 [IFO,App] Couldn't get X position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getXPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getXPosition(CMMCore.java:1182) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:76) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1260) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:47.904304 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:35:47.904304 tid7184 [IFO,App] Couldn't get Y position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getYPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getYPosition(CMMCore.java:1186) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:78) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1263) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:47.904304 tid7184 [ERR,Core] Error occurred in device Picard Z Stage: Error in device "Picard Z Stage": Unable to communicate with the device. (35) 2015-05-06T10:35:47.904304 tid7184 [IFO,App] Couldn't get stage position for Picard Z Stage [ ] java.lang.Exception: Error in device "Picard Z Stage": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1266) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:48.404333 tid7184 [ERR,Core] Error occurred in device Picard Twister: Error in device "Picard Twister": Unable to communicate with the device. (35) 2015-05-06T10:35:48.404333 tid7184 [IFO,App] Couldn't get stage position for Picard Twister [ ] java.lang.Exception: Error in device "Picard Twister": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.setup.PicardTwister.getPosition(PicardTwister.java:27) [ ] at spim.setup.SPIMSetup.getAngle(SPIMSetup.java:222) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1269) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:48.908362 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:35:48.908362 tid7184 [IFO,App] Couldn't get X position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getXPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getXPosition(CMMCore.java:1182) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:76) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1260) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:49.408390 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:35:49.408390 tid7184 [IFO,App] Couldn't get Y position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getYPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getYPosition(CMMCore.java:1186) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:78) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1263) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:49.408390 tid7184 [ERR,Core] Error occurred in device Picard Z Stage: Error in device "Picard Z Stage": Unable to communicate with the device. (35) 2015-05-06T10:35:49.408390 tid7184 [IFO,App] Couldn't get stage position for Picard Z Stage [ ] java.lang.Exception: Error in device "Picard Z Stage": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1266) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:49.908419 tid7184 [ERR,Core] Error occurred in device Picard Twister: Error in device "Picard Twister": Unable to communicate with the device. (35) 2015-05-06T10:35:49.908419 tid7184 [IFO,App] Couldn't get stage position for Picard Twister [ ] java.lang.Exception: Error in device "Picard Twister": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.setup.PicardTwister.getPosition(PicardTwister.java:27) [ ] at spim.setup.SPIMSetup.getAngle(SPIMSetup.java:222) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1269) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:50.413448 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:35:50.413448 tid7184 [IFO,App] Couldn't get X position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getXPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getXPosition(CMMCore.java:1182) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:76) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1260) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:50.913477 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:35:50.913477 tid7184 [IFO,App] Couldn't get Y position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getYPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getYPosition(CMMCore.java:1186) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:78) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1263) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:50.913477 tid7184 [ERR,Core] Error occurred in device Picard Z Stage: Error in device "Picard Z Stage": Unable to communicate with the device. (35) 2015-05-06T10:35:50.913477 tid7184 [IFO,App] Couldn't get stage position for Picard Z Stage [ ] java.lang.Exception: Error in device "Picard Z Stage": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1266) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:51.413505 tid7184 [ERR,Core] Error occurred in device Picard Twister: Error in device "Picard Twister": Unable to communicate with the device. (35) 2015-05-06T10:35:51.413505 tid7184 [IFO,App] Couldn't get stage position for Picard Twister [ ] java.lang.Exception: Error in device "Picard Twister": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.setup.PicardTwister.getPosition(PicardTwister.java:27) [ ] at spim.setup.SPIMSetup.getAngle(SPIMSetup.java:222) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1269) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:51.918534 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:35:51.918534 tid7184 [IFO,App] Couldn't get X position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getXPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getXPosition(CMMCore.java:1182) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:76) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1260) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:52.418563 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:35:52.418563 tid7184 [IFO,App] Couldn't get Y position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getYPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getYPosition(CMMCore.java:1186) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:78) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1263) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:52.418563 tid7184 [ERR,Core] Error occurred in device Picard Z Stage: Error in device "Picard Z Stage": Unable to communicate with the device. (35) 2015-05-06T10:35:52.418563 tid7184 [IFO,App] Couldn't get stage position for Picard Z Stage [ ] java.lang.Exception: Error in device "Picard Z Stage": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1266) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:52.918591 tid7184 [ERR,Core] Error occurred in device Picard Twister: Error in device "Picard Twister": Unable to communicate with the device. (35) 2015-05-06T10:35:52.918591 tid7184 [IFO,App] Couldn't get stage position for Picard Twister [ ] java.lang.Exception: Error in device "Picard Twister": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.setup.PicardTwister.getPosition(PicardTwister.java:27) [ ] at spim.setup.SPIMSetup.getAngle(SPIMSetup.java:222) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1269) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:53.423620 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:35:53.423620 tid7184 [IFO,App] Couldn't get X position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getXPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getXPosition(CMMCore.java:1182) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:76) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1260) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:53.923649 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:35:53.923649 tid7184 [IFO,App] Couldn't get Y position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getYPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getYPosition(CMMCore.java:1186) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:78) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1263) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:53.923649 tid7184 [ERR,Core] Error occurred in device Picard Z Stage: Error in device "Picard Z Stage": Unable to communicate with the device. (35) 2015-05-06T10:35:53.923649 tid7184 [IFO,App] Couldn't get stage position for Picard Z Stage [ ] java.lang.Exception: Error in device "Picard Z Stage": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1266) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:54.423677 tid7184 [ERR,Core] Error occurred in device Picard Twister: Error in device "Picard Twister": Unable to communicate with the device. (35) 2015-05-06T10:35:54.423677 tid7184 [IFO,App] Couldn't get stage position for Picard Twister [ ] java.lang.Exception: Error in device "Picard Twister": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.setup.PicardTwister.getPosition(PicardTwister.java:27) [ ] at spim.setup.SPIMSetup.getAngle(SPIMSetup.java:222) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1269) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:54.928706 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:35:54.928706 tid7184 [IFO,App] Couldn't get X position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getXPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getXPosition(CMMCore.java:1182) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:76) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1260) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:55.428735 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:35:55.428735 tid7184 [IFO,App] Couldn't get Y position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getYPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getYPosition(CMMCore.java:1186) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:78) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1263) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:55.428735 tid7184 [ERR,Core] Error occurred in device Picard Z Stage: Error in device "Picard Z Stage": Unable to communicate with the device. (35) 2015-05-06T10:35:55.428735 tid7184 [IFO,App] Couldn't get stage position for Picard Z Stage [ ] java.lang.Exception: Error in device "Picard Z Stage": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1266) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:55.928763 tid7184 [ERR,Core] Error occurred in device Picard Twister: Error in device "Picard Twister": Unable to communicate with the device. (35) 2015-05-06T10:35:55.928763 tid7184 [IFO,App] Couldn't get stage position for Picard Twister [ ] java.lang.Exception: Error in device "Picard Twister": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.setup.PicardTwister.getPosition(PicardTwister.java:27) [ ] at spim.setup.SPIMSetup.getAngle(SPIMSetup.java:222) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1269) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:56.432792 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:35:56.432792 tid7184 [IFO,App] Couldn't get X position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getXPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getXPosition(CMMCore.java:1182) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:76) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1260) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:56.932821 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:35:56.932821 tid7184 [IFO,App] Couldn't get Y position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getYPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getYPosition(CMMCore.java:1186) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:78) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1263) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:56.932821 tid7184 [ERR,Core] Error occurred in device Picard Z Stage: Error in device "Picard Z Stage": Unable to communicate with the device. (35) 2015-05-06T10:35:56.932821 tid7184 [IFO,App] Couldn't get stage position for Picard Z Stage [ ] java.lang.Exception: Error in device "Picard Z Stage": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1266) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:57.432849 tid7184 [ERR,Core] Error occurred in device Picard Twister: Error in device "Picard Twister": Unable to communicate with the device. (35) 2015-05-06T10:35:57.432849 tid7184 [IFO,App] Couldn't get stage position for Picard Twister [ ] java.lang.Exception: Error in device "Picard Twister": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.setup.PicardTwister.getPosition(PicardTwister.java:27) [ ] at spim.setup.SPIMSetup.getAngle(SPIMSetup.java:222) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1269) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:57.937878 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:35:57.937878 tid7184 [IFO,App] Couldn't get X position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getXPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getXPosition(CMMCore.java:1182) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:76) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1260) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:58.437907 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:35:58.437907 tid7184 [IFO,App] Couldn't get Y position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getYPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getYPosition(CMMCore.java:1186) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:78) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1263) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:58.437907 tid7184 [ERR,Core] Error occurred in device Picard Z Stage: Error in device "Picard Z Stage": Unable to communicate with the device. (35) 2015-05-06T10:35:58.437907 tid7184 [IFO,App] Couldn't get stage position for Picard Z Stage [ ] java.lang.Exception: Error in device "Picard Z Stage": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1266) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:58.937935 tid7184 [ERR,Core] Error occurred in device Picard Twister: Error in device "Picard Twister": Unable to communicate with the device. (35) 2015-05-06T10:35:58.937935 tid7184 [IFO,App] Couldn't get stage position for Picard Twister [ ] java.lang.Exception: Error in device "Picard Twister": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.setup.PicardTwister.getPosition(PicardTwister.java:27) [ ] at spim.setup.SPIMSetup.getAngle(SPIMSetup.java:222) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1269) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:59.442964 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:35:59.442964 tid7184 [IFO,App] Couldn't get X position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getXPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getXPosition(CMMCore.java:1182) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:76) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1260) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:59.942993 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:35:59.942993 tid7184 [IFO,App] Couldn't get Y position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getYPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getYPosition(CMMCore.java:1186) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:78) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1263) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:35:59.942993 tid7184 [ERR,Core] Error occurred in device Picard Z Stage: Error in device "Picard Z Stage": Unable to communicate with the device. (35) 2015-05-06T10:35:59.942993 tid7184 [IFO,App] Couldn't get stage position for Picard Z Stage [ ] java.lang.Exception: Error in device "Picard Z Stage": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1266) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:00.443022 tid7184 [ERR,Core] Error occurred in device Picard Twister: Error in device "Picard Twister": Unable to communicate with the device. (35) 2015-05-06T10:36:00.443022 tid7184 [IFO,App] Couldn't get stage position for Picard Twister [ ] java.lang.Exception: Error in device "Picard Twister": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.setup.PicardTwister.getPosition(PicardTwister.java:27) [ ] at spim.setup.SPIMSetup.getAngle(SPIMSetup.java:222) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1269) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:00.947050 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:36:00.947050 tid7184 [IFO,App] Couldn't get X position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getXPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getXPosition(CMMCore.java:1182) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:76) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1260) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:01.447079 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:36:01.447079 tid7184 [IFO,App] Couldn't get Y position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getYPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getYPosition(CMMCore.java:1186) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:78) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1263) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:01.447079 tid7184 [ERR,Core] Error occurred in device Picard Z Stage: Error in device "Picard Z Stage": Unable to communicate with the device. (35) 2015-05-06T10:36:01.447079 tid7184 [IFO,App] Couldn't get stage position for Picard Z Stage [ ] java.lang.Exception: Error in device "Picard Z Stage": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1266) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:01.947108 tid7184 [ERR,Core] Error occurred in device Picard Twister: Error in device "Picard Twister": Unable to communicate with the device. (35) 2015-05-06T10:36:01.947108 tid7184 [IFO,App] Couldn't get stage position for Picard Twister [ ] java.lang.Exception: Error in device "Picard Twister": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.setup.PicardTwister.getPosition(PicardTwister.java:27) [ ] at spim.setup.SPIMSetup.getAngle(SPIMSetup.java:222) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1269) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:02.451136 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:36:02.451136 tid7184 [IFO,App] Couldn't get X position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getXPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getXPosition(CMMCore.java:1182) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:76) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1260) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:02.951165 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:36:02.951165 tid7184 [IFO,App] Couldn't get Y position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getYPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getYPosition(CMMCore.java:1186) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:78) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1263) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:02.951165 tid7184 [ERR,Core] Error occurred in device Picard Z Stage: Error in device "Picard Z Stage": Unable to communicate with the device. (35) 2015-05-06T10:36:02.951165 tid7184 [IFO,App] Couldn't get stage position for Picard Z Stage [ ] java.lang.Exception: Error in device "Picard Z Stage": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1266) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:03.451194 tid7184 [ERR,Core] Error occurred in device Picard Twister: Error in device "Picard Twister": Unable to communicate with the device. (35) 2015-05-06T10:36:03.451194 tid7184 [IFO,App] Couldn't get stage position for Picard Twister [ ] java.lang.Exception: Error in device "Picard Twister": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.setup.PicardTwister.getPosition(PicardTwister.java:27) [ ] at spim.setup.SPIMSetup.getAngle(SPIMSetup.java:222) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1269) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:03.955222 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:36:03.955222 tid7184 [IFO,App] Couldn't get X position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getXPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getXPosition(CMMCore.java:1182) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:76) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1260) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:04.455251 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:36:04.455251 tid7184 [IFO,App] Couldn't get Y position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getYPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getYPosition(CMMCore.java:1186) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:78) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1263) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:04.455251 tid7184 [ERR,Core] Error occurred in device Picard Z Stage: Error in device "Picard Z Stage": Unable to communicate with the device. (35) 2015-05-06T10:36:04.455251 tid7184 [IFO,App] Couldn't get stage position for Picard Z Stage [ ] java.lang.Exception: Error in device "Picard Z Stage": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1266) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:04.955280 tid7184 [ERR,Core] Error occurred in device Picard Twister: Error in device "Picard Twister": Unable to communicate with the device. (35) 2015-05-06T10:36:04.955280 tid7184 [IFO,App] Couldn't get stage position for Picard Twister [ ] java.lang.Exception: Error in device "Picard Twister": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.setup.PicardTwister.getPosition(PicardTwister.java:27) [ ] at spim.setup.SPIMSetup.getAngle(SPIMSetup.java:222) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1269) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:05.460309 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:36:05.460309 tid7184 [IFO,App] Couldn't get X position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getXPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getXPosition(CMMCore.java:1182) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:76) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1260) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:05.960337 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:36:05.960337 tid7184 [IFO,App] Couldn't get Y position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getYPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getYPosition(CMMCore.java:1186) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:78) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1263) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:05.960337 tid7184 [ERR,Core] Error occurred in device Picard Z Stage: Error in device "Picard Z Stage": Unable to communicate with the device. (35) 2015-05-06T10:36:05.960337 tid7184 [IFO,App] Couldn't get stage position for Picard Z Stage [ ] java.lang.Exception: Error in device "Picard Z Stage": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1266) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:06.460366 tid7184 [ERR,Core] Error occurred in device Picard Twister: Error in device "Picard Twister": Unable to communicate with the device. (35) 2015-05-06T10:36:06.460366 tid7184 [IFO,App] Couldn't get stage position for Picard Twister [ ] java.lang.Exception: Error in device "Picard Twister": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.setup.PicardTwister.getPosition(PicardTwister.java:27) [ ] at spim.setup.SPIMSetup.getAngle(SPIMSetup.java:222) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1269) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:06.965395 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:36:06.965395 tid7184 [IFO,App] Couldn't get X position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getXPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getXPosition(CMMCore.java:1182) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:76) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1260) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:07.465423 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:36:07.465423 tid7184 [IFO,App] Couldn't get Y position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getYPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getYPosition(CMMCore.java:1186) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:78) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1263) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:07.465423 tid7184 [ERR,Core] Error occurred in device Picard Z Stage: Error in device "Picard Z Stage": Unable to communicate with the device. (35) 2015-05-06T10:36:07.465423 tid7184 [IFO,App] Couldn't get stage position for Picard Z Stage [ ] java.lang.Exception: Error in device "Picard Z Stage": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1266) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:07.965452 tid7184 [ERR,Core] Error occurred in device Picard Twister: Error in device "Picard Twister": Unable to communicate with the device. (35) 2015-05-06T10:36:07.965452 tid7184 [IFO,App] Couldn't get stage position for Picard Twister [ ] java.lang.Exception: Error in device "Picard Twister": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.setup.PicardTwister.getPosition(PicardTwister.java:27) [ ] at spim.setup.SPIMSetup.getAngle(SPIMSetup.java:222) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1269) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:08.470481 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:36:08.470481 tid7184 [IFO,App] Couldn't get X position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getXPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getXPosition(CMMCore.java:1182) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:76) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1260) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:08.970509 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:36:08.970509 tid7184 [IFO,App] Couldn't get Y position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getYPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getYPosition(CMMCore.java:1186) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:78) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1263) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:08.970509 tid7184 [ERR,Core] Error occurred in device Picard Z Stage: Error in device "Picard Z Stage": Unable to communicate with the device. (35) 2015-05-06T10:36:08.970509 tid7184 [IFO,App] Couldn't get stage position for Picard Z Stage [ ] java.lang.Exception: Error in device "Picard Z Stage": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1266) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:09.470538 tid7184 [ERR,Core] Error occurred in device Picard Twister: Error in device "Picard Twister": Unable to communicate with the device. (35) 2015-05-06T10:36:09.470538 tid7184 [IFO,App] Couldn't get stage position for Picard Twister [ ] java.lang.Exception: Error in device "Picard Twister": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.setup.PicardTwister.getPosition(PicardTwister.java:27) [ ] at spim.setup.SPIMSetup.getAngle(SPIMSetup.java:222) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1269) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:09.975567 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:36:09.975567 tid7184 [IFO,App] Couldn't get X position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getXPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getXPosition(CMMCore.java:1182) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:76) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1260) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:10.475595 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:36:10.475595 tid7184 [IFO,App] Couldn't get Y position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getYPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getYPosition(CMMCore.java:1186) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:78) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1263) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:10.475595 tid7184 [ERR,Core] Error occurred in device Picard Z Stage: Error in device "Picard Z Stage": Unable to communicate with the device. (35) 2015-05-06T10:36:10.475595 tid7184 [IFO,App] Couldn't get stage position for Picard Z Stage [ ] java.lang.Exception: Error in device "Picard Z Stage": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1266) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:10.975624 tid7184 [ERR,Core] Error occurred in device Picard Twister: Error in device "Picard Twister": Unable to communicate with the device. (35) 2015-05-06T10:36:10.975624 tid7184 [IFO,App] Couldn't get stage position for Picard Twister [ ] java.lang.Exception: Error in device "Picard Twister": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.setup.PicardTwister.getPosition(PicardTwister.java:27) [ ] at spim.setup.SPIMSetup.getAngle(SPIMSetup.java:222) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1269) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:11.480653 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:36:11.480653 tid7184 [IFO,App] Couldn't get X position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getXPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getXPosition(CMMCore.java:1182) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:76) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1260) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:11.980681 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:36:11.980681 tid7184 [IFO,App] Couldn't get Y position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getYPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getYPosition(CMMCore.java:1186) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:78) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1263) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:11.980681 tid7184 [ERR,Core] Error occurred in device Picard Z Stage: Error in device "Picard Z Stage": Unable to communicate with the device. (35) 2015-05-06T10:36:11.980681 tid7184 [IFO,App] Couldn't get stage position for Picard Z Stage [ ] java.lang.Exception: Error in device "Picard Z Stage": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1266) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:12.480710 tid7184 [ERR,Core] Error occurred in device Picard Twister: Error in device "Picard Twister": Unable to communicate with the device. (35) 2015-05-06T10:36:12.480710 tid7184 [IFO,App] Couldn't get stage position for Picard Twister [ ] java.lang.Exception: Error in device "Picard Twister": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.setup.PicardTwister.getPosition(PicardTwister.java:27) [ ] at spim.setup.SPIMSetup.getAngle(SPIMSetup.java:222) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1269) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:12.985739 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:36:12.985739 tid7184 [IFO,App] Couldn't get X position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getXPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getXPosition(CMMCore.java:1182) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:76) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1260) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:13.485768 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:36:13.485768 tid7184 [IFO,App] Couldn't get Y position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getYPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getYPosition(CMMCore.java:1186) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:78) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1263) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:13.485768 tid7184 [ERR,Core] Error occurred in device Picard Z Stage: Error in device "Picard Z Stage": Unable to communicate with the device. (35) 2015-05-06T10:36:13.485768 tid7184 [IFO,App] Couldn't get stage position for Picard Z Stage [ ] java.lang.Exception: Error in device "Picard Z Stage": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1266) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:13.985796 tid7184 [ERR,Core] Error occurred in device Picard Twister: Error in device "Picard Twister": Unable to communicate with the device. (35) 2015-05-06T10:36:13.985796 tid7184 [IFO,App] Couldn't get stage position for Picard Twister [ ] java.lang.Exception: Error in device "Picard Twister": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.setup.PicardTwister.getPosition(PicardTwister.java:27) [ ] at spim.setup.SPIMSetup.getAngle(SPIMSetup.java:222) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1269) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:14.490825 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:36:14.490825 tid7184 [IFO,App] Couldn't get X position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getXPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getXPosition(CMMCore.java:1182) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:76) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1260) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:14.990854 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:36:14.990854 tid7184 [IFO,App] Couldn't get Y position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getYPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getYPosition(CMMCore.java:1186) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:78) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1263) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:14.990854 tid7184 [ERR,Core] Error occurred in device Picard Z Stage: Error in device "Picard Z Stage": Unable to communicate with the device. (35) 2015-05-06T10:36:14.990854 tid7184 [IFO,App] Couldn't get stage position for Picard Z Stage [ ] java.lang.Exception: Error in device "Picard Z Stage": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1266) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:15.490882 tid7184 [ERR,Core] Error occurred in device Picard Twister: Error in device "Picard Twister": Unable to communicate with the device. (35) 2015-05-06T10:36:15.490882 tid7184 [IFO,App] Couldn't get stage position for Picard Twister [ ] java.lang.Exception: Error in device "Picard Twister": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.setup.PicardTwister.getPosition(PicardTwister.java:27) [ ] at spim.setup.SPIMSetup.getAngle(SPIMSetup.java:222) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1269) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:15.994911 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:36:15.994911 tid7184 [IFO,App] Couldn't get X position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getXPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getXPosition(CMMCore.java:1182) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:76) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1260) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:16.494940 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:36:16.494940 tid7184 [IFO,App] Couldn't get Y position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getYPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getYPosition(CMMCore.java:1186) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:78) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1263) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:16.494940 tid7184 [ERR,Core] Error occurred in device Picard Z Stage: Error in device "Picard Z Stage": Unable to communicate with the device. (35) 2015-05-06T10:36:16.494940 tid7184 [IFO,App] Couldn't get stage position for Picard Z Stage [ ] java.lang.Exception: Error in device "Picard Z Stage": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1266) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:16.994968 tid7184 [ERR,Core] Error occurred in device Picard Twister: Error in device "Picard Twister": Unable to communicate with the device. (35) 2015-05-06T10:36:16.994968 tid7184 [IFO,App] Couldn't get stage position for Picard Twister [ ] java.lang.Exception: Error in device "Picard Twister": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.setup.PicardTwister.getPosition(PicardTwister.java:27) [ ] at spim.setup.SPIMSetup.getAngle(SPIMSetup.java:222) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1269) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:17.498997 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:36:17.498997 tid7184 [IFO,App] Couldn't get X position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getXPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getXPosition(CMMCore.java:1182) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:76) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1260) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:17.999026 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:36:17.999026 tid7184 [IFO,App] Couldn't get Y position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getYPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getYPosition(CMMCore.java:1186) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:78) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1263) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:17.999026 tid7184 [ERR,Core] Error occurred in device Picard Z Stage: Error in device "Picard Z Stage": Unable to communicate with the device. (35) 2015-05-06T10:36:17.999026 tid7184 [IFO,App] Couldn't get stage position for Picard Z Stage [ ] java.lang.Exception: Error in device "Picard Z Stage": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1266) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:18.499054 tid7184 [ERR,Core] Error occurred in device Picard Twister: Error in device "Picard Twister": Unable to communicate with the device. (35) 2015-05-06T10:36:18.499054 tid7184 [IFO,App] Couldn't get stage position for Picard Twister [ ] java.lang.Exception: Error in device "Picard Twister": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.setup.PicardTwister.getPosition(PicardTwister.java:27) [ ] at spim.setup.SPIMSetup.getAngle(SPIMSetup.java:222) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1269) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:19.004083 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:36:19.004083 tid7184 [IFO,App] Couldn't get X position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getXPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getXPosition(CMMCore.java:1182) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:76) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1260) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:19.504112 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:36:19.504112 tid7184 [IFO,App] Couldn't get Y position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getYPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getYPosition(CMMCore.java:1186) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:78) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1263) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:19.504112 tid7184 [ERR,Core] Error occurred in device Picard Z Stage: Error in device "Picard Z Stage": Unable to communicate with the device. (35) 2015-05-06T10:36:19.504112 tid7184 [IFO,App] Couldn't get stage position for Picard Z Stage [ ] java.lang.Exception: Error in device "Picard Z Stage": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1266) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:20.004140 tid7184 [ERR,Core] Error occurred in device Picard Twister: Error in device "Picard Twister": Unable to communicate with the device. (35) 2015-05-06T10:36:20.004140 tid7184 [IFO,App] Couldn't get stage position for Picard Twister [ ] java.lang.Exception: Error in device "Picard Twister": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.setup.PicardTwister.getPosition(PicardTwister.java:27) [ ] at spim.setup.SPIMSetup.getAngle(SPIMSetup.java:222) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1269) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:20.509169 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:36:20.509169 tid7184 [IFO,App] Couldn't get X position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getXPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getXPosition(CMMCore.java:1182) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:76) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1260) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:21.009198 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:36:21.009198 tid7184 [IFO,App] Couldn't get Y position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getYPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getYPosition(CMMCore.java:1186) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:78) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1263) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:21.009198 tid7184 [ERR,Core] Error occurred in device Picard Z Stage: Error in device "Picard Z Stage": Unable to communicate with the device. (35) 2015-05-06T10:36:21.009198 tid7184 [IFO,App] Couldn't get stage position for Picard Z Stage [ ] java.lang.Exception: Error in device "Picard Z Stage": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1266) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:21.509226 tid7184 [ERR,Core] Error occurred in device Picard Twister: Error in device "Picard Twister": Unable to communicate with the device. (35) 2015-05-06T10:36:21.509226 tid7184 [IFO,App] Couldn't get stage position for Picard Twister [ ] java.lang.Exception: Error in device "Picard Twister": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.setup.PicardTwister.getPosition(PicardTwister.java:27) [ ] at spim.setup.SPIMSetup.getAngle(SPIMSetup.java:222) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1269) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:22.014255 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:36:22.014255 tid7184 [IFO,App] Couldn't get X position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getXPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getXPosition(CMMCore.java:1182) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:76) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1260) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:22.514284 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:36:22.514284 tid7184 [IFO,App] Couldn't get Y position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getYPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getYPosition(CMMCore.java:1186) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:78) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1263) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:22.514284 tid7184 [ERR,Core] Error occurred in device Picard Z Stage: Error in device "Picard Z Stage": Unable to communicate with the device. (35) 2015-05-06T10:36:22.514284 tid7184 [IFO,App] Couldn't get stage position for Picard Z Stage [ ] java.lang.Exception: Error in device "Picard Z Stage": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1266) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:23.014313 tid7184 [ERR,Core] Error occurred in device Picard Twister: Error in device "Picard Twister": Unable to communicate with the device. (35) 2015-05-06T10:36:23.014313 tid7184 [IFO,App] Couldn't get stage position for Picard Twister [ ] java.lang.Exception: Error in device "Picard Twister": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.setup.PicardTwister.getPosition(PicardTwister.java:27) [ ] at spim.setup.SPIMSetup.getAngle(SPIMSetup.java:222) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1269) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:23.519341 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:36:23.519341 tid7184 [IFO,App] Couldn't get X position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getXPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getXPosition(CMMCore.java:1182) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:76) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1260) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:24.019370 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:36:24.019370 tid7184 [IFO,App] Couldn't get Y position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getYPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getYPosition(CMMCore.java:1186) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:78) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1263) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:24.019370 tid7184 [ERR,Core] Error occurred in device Picard Z Stage: Error in device "Picard Z Stage": Unable to communicate with the device. (35) 2015-05-06T10:36:24.019370 tid7184 [IFO,App] Couldn't get stage position for Picard Z Stage [ ] java.lang.Exception: Error in device "Picard Z Stage": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1266) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:24.519399 tid7184 [ERR,Core] Error occurred in device Picard Twister: Error in device "Picard Twister": Unable to communicate with the device. (35) 2015-05-06T10:36:24.519399 tid7184 [IFO,App] Couldn't get stage position for Picard Twister [ ] java.lang.Exception: Error in device "Picard Twister": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.setup.PicardTwister.getPosition(PicardTwister.java:27) [ ] at spim.setup.SPIMSetup.getAngle(SPIMSetup.java:222) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1269) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:25.024428 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:36:25.024428 tid7184 [IFO,App] Couldn't get X position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getXPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getXPosition(CMMCore.java:1182) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:76) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1260) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:25.524456 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:36:25.524456 tid7184 [IFO,App] Couldn't get Y position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getYPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getYPosition(CMMCore.java:1186) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:78) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1263) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:25.524456 tid7184 [ERR,Core] Error occurred in device Picard Z Stage: Error in device "Picard Z Stage": Unable to communicate with the device. (35) 2015-05-06T10:36:25.524456 tid7184 [IFO,App] Couldn't get stage position for Picard Z Stage [ ] java.lang.Exception: Error in device "Picard Z Stage": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1266) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:26.024485 tid7184 [ERR,Core] Error occurred in device Picard Twister: Error in device "Picard Twister": Unable to communicate with the device. (35) 2015-05-06T10:36:26.024485 tid7184 [IFO,App] Couldn't get stage position for Picard Twister [ ] java.lang.Exception: Error in device "Picard Twister": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.setup.PicardTwister.getPosition(PicardTwister.java:27) [ ] at spim.setup.SPIMSetup.getAngle(SPIMSetup.java:222) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1269) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:26.529514 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:36:26.529514 tid7184 [IFO,App] Couldn't get X position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getXPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getXPosition(CMMCore.java:1182) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:76) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1260) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:27.029542 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:36:27.029542 tid7184 [IFO,App] Couldn't get Y position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getYPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getYPosition(CMMCore.java:1186) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:78) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1263) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:27.029542 tid7184 [ERR,Core] Error occurred in device Picard Z Stage: Error in device "Picard Z Stage": Unable to communicate with the device. (35) 2015-05-06T10:36:27.029542 tid7184 [IFO,App] Couldn't get stage position for Picard Z Stage [ ] java.lang.Exception: Error in device "Picard Z Stage": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1266) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:27.529571 tid7184 [ERR,Core] Error occurred in device Picard Twister: Error in device "Picard Twister": Unable to communicate with the device. (35) 2015-05-06T10:36:27.529571 tid7184 [IFO,App] Couldn't get stage position for Picard Twister [ ] java.lang.Exception: Error in device "Picard Twister": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.setup.PicardTwister.getPosition(PicardTwister.java:27) [ ] at spim.setup.SPIMSetup.getAngle(SPIMSetup.java:222) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1269) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:28.034600 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:36:28.034600 tid7184 [IFO,App] Couldn't get X position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getXPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getXPosition(CMMCore.java:1182) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:76) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1260) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:28.534628 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:36:28.534628 tid7184 [IFO,App] Couldn't get Y position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getYPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getYPosition(CMMCore.java:1186) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:78) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1263) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:28.534628 tid7184 [ERR,Core] Error occurred in device Picard Z Stage: Error in device "Picard Z Stage": Unable to communicate with the device. (35) 2015-05-06T10:36:28.534628 tid7184 [IFO,App] Couldn't get stage position for Picard Z Stage [ ] java.lang.Exception: Error in device "Picard Z Stage": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1266) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:29.034657 tid7184 [ERR,Core] Error occurred in device Picard Twister: Error in device "Picard Twister": Unable to communicate with the device. (35) 2015-05-06T10:36:29.034657 tid7184 [IFO,App] Couldn't get stage position for Picard Twister [ ] java.lang.Exception: Error in device "Picard Twister": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.setup.PicardTwister.getPosition(PicardTwister.java:27) [ ] at spim.setup.SPIMSetup.getAngle(SPIMSetup.java:222) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1269) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:29.539686 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:36:29.539686 tid7184 [IFO,App] Couldn't get X position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getXPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getXPosition(CMMCore.java:1182) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:76) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1260) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:30.039714 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:36:30.039714 tid7184 [IFO,App] Couldn't get Y position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getYPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getYPosition(CMMCore.java:1186) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:78) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1263) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:30.039714 tid7184 [ERR,Core] Error occurred in device Picard Z Stage: Error in device "Picard Z Stage": Unable to communicate with the device. (35) 2015-05-06T10:36:30.039714 tid7184 [IFO,App] Couldn't get stage position for Picard Z Stage [ ] java.lang.Exception: Error in device "Picard Z Stage": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1266) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:30.539743 tid7184 [ERR,Core] Error occurred in device Picard Twister: Error in device "Picard Twister": Unable to communicate with the device. (35) 2015-05-06T10:36:30.539743 tid7184 [IFO,App] Couldn't get stage position for Picard Twister [ ] java.lang.Exception: Error in device "Picard Twister": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.setup.PicardTwister.getPosition(PicardTwister.java:27) [ ] at spim.setup.SPIMSetup.getAngle(SPIMSetup.java:222) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1269) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:31.043772 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:36:31.043772 tid7184 [IFO,App] Couldn't get X position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getXPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getXPosition(CMMCore.java:1182) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:76) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1260) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:31.543800 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:36:31.543800 tid7184 [IFO,App] Couldn't get Y position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getYPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getYPosition(CMMCore.java:1186) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:78) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1263) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:31.543800 tid7184 [ERR,Core] Error occurred in device Picard Z Stage: Error in device "Picard Z Stage": Unable to communicate with the device. (35) 2015-05-06T10:36:31.543800 tid7184 [IFO,App] Couldn't get stage position for Picard Z Stage [ ] java.lang.Exception: Error in device "Picard Z Stage": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1266) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:32.043829 tid7184 [ERR,Core] Error occurred in device Picard Twister: Error in device "Picard Twister": Unable to communicate with the device. (35) 2015-05-06T10:36:32.043829 tid7184 [IFO,App] Couldn't get stage position for Picard Twister [ ] java.lang.Exception: Error in device "Picard Twister": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.setup.PicardTwister.getPosition(PicardTwister.java:27) [ ] at spim.setup.SPIMSetup.getAngle(SPIMSetup.java:222) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1269) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:32.548858 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:36:32.548858 tid7184 [IFO,App] Couldn't get X position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getXPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getXPosition(CMMCore.java:1182) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:76) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1260) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:33.048887 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:36:33.048887 tid7184 [IFO,App] Couldn't get Y position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getYPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getYPosition(CMMCore.java:1186) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:78) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1263) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:33.048887 tid7184 [ERR,Core] Error occurred in device Picard Z Stage: Error in device "Picard Z Stage": Unable to communicate with the device. (35) 2015-05-06T10:36:33.048887 tid7184 [IFO,App] Couldn't get stage position for Picard Z Stage [ ] java.lang.Exception: Error in device "Picard Z Stage": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1266) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:33.548915 tid7184 [ERR,Core] Error occurred in device Picard Twister: Error in device "Picard Twister": Unable to communicate with the device. (35) 2015-05-06T10:36:33.548915 tid7184 [IFO,App] Couldn't get stage position for Picard Twister [ ] java.lang.Exception: Error in device "Picard Twister": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.setup.PicardTwister.getPosition(PicardTwister.java:27) [ ] at spim.setup.SPIMSetup.getAngle(SPIMSetup.java:222) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1269) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:34.052944 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:36:34.052944 tid7184 [IFO,App] Couldn't get X position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getXPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getXPosition(CMMCore.java:1182) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:76) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1260) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:34.552973 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:36:34.552973 tid7184 [IFO,App] Couldn't get Y position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getYPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getYPosition(CMMCore.java:1186) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:78) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1263) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:34.552973 tid7184 [ERR,Core] Error occurred in device Picard Z Stage: Error in device "Picard Z Stage": Unable to communicate with the device. (35) 2015-05-06T10:36:34.552973 tid7184 [IFO,App] Couldn't get stage position for Picard Z Stage [ ] java.lang.Exception: Error in device "Picard Z Stage": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1266) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:35.053001 tid7184 [ERR,Core] Error occurred in device Picard Twister: Error in device "Picard Twister": Unable to communicate with the device. (35) 2015-05-06T10:36:35.053001 tid7184 [IFO,App] Couldn't get stage position for Picard Twister [ ] java.lang.Exception: Error in device "Picard Twister": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.setup.PicardTwister.getPosition(PicardTwister.java:27) [ ] at spim.setup.SPIMSetup.getAngle(SPIMSetup.java:222) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1269) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:35.558030 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:36:35.558030 tid7184 [IFO,App] Couldn't get X position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getXPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getXPosition(CMMCore.java:1182) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:76) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1260) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:36.058059 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:36:36.058059 tid7184 [IFO,App] Couldn't get Y position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getYPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getYPosition(CMMCore.java:1186) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:78) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1263) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:36.058059 tid7184 [ERR,Core] Error occurred in device Picard Z Stage: Error in device "Picard Z Stage": Unable to communicate with the device. (35) 2015-05-06T10:36:36.058059 tid7184 [IFO,App] Couldn't get stage position for Picard Z Stage [ ] java.lang.Exception: Error in device "Picard Z Stage": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1266) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:36.558087 tid7184 [ERR,Core] Error occurred in device Picard Twister: Error in device "Picard Twister": Unable to communicate with the device. (35) 2015-05-06T10:36:36.558087 tid7184 [IFO,App] Couldn't get stage position for Picard Twister [ ] java.lang.Exception: Error in device "Picard Twister": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.setup.PicardTwister.getPosition(PicardTwister.java:27) [ ] at spim.setup.SPIMSetup.getAngle(SPIMSetup.java:222) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1269) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:37.063116 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:36:37.063116 tid7184 [IFO,App] Couldn't get X position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getXPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getXPosition(CMMCore.java:1182) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:76) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1260) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:37.563145 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:36:37.563145 tid7184 [IFO,App] Couldn't get Y position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getYPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getYPosition(CMMCore.java:1186) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:78) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1263) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:37.563145 tid7184 [ERR,Core] Error occurred in device Picard Z Stage: Error in device "Picard Z Stage": Unable to communicate with the device. (35) 2015-05-06T10:36:37.563145 tid7184 [IFO,App] Couldn't get stage position for Picard Z Stage [ ] java.lang.Exception: Error in device "Picard Z Stage": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1266) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:38.063173 tid7184 [ERR,Core] Error occurred in device Picard Twister: Error in device "Picard Twister": Unable to communicate with the device. (35) 2015-05-06T10:36:38.063173 tid7184 [IFO,App] Couldn't get stage position for Picard Twister [ ] java.lang.Exception: Error in device "Picard Twister": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.setup.PicardTwister.getPosition(PicardTwister.java:27) [ ] at spim.setup.SPIMSetup.getAngle(SPIMSetup.java:222) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1269) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:38.568202 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:36:38.568202 tid7184 [IFO,App] Couldn't get X position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getXPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getXPosition(CMMCore.java:1182) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:76) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1260) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:39.068231 tid7184 [ERR,Core] Error occurred in device Picard XY Stage: Error in device "Picard XY Stage": Unknown error in the device (1) 2015-05-06T10:36:39.068231 tid7184 [IFO,App] Couldn't get Y position on Picard XY Stage [ ] java.lang.Exception: Error in device "Picard XY Stage": Unknown error in the device (1) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getYPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getYPosition(CMMCore.java:1186) [ ] at spim.setup.GenericXYStage$SubStage.getPosition(GenericXYStage.java:78) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1263) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462) 2015-05-06T10:36:39.068231 tid7184 [ERR,Core] Error occurred in device Picard Z Stage: Error in device "Picard Z Stage": Unable to communicate with the device. (35) 2015-05-06T10:36:39.068231 tid7184 [IFO,App] Couldn't get stage position for Picard Z Stage [ ] java.lang.Exception: Error in device "Picard Z Stage": Unable to communicate with the device. (35) in Thread[Timer-0,6,main] [ ] at mmcorej.MMCoreJJNI.CMMCore_getPosition__SWIG_0(Native Method) [ ] at mmcorej.CMMCore.getPosition(CMMCore.java:1106) [ ] at spim.setup.Stage.getPosition(Stage.java:35) [ ] at spim.SPIMAcquisition.updateMotorPositions(SPIMAcquisition.java:1266) [ ] at spim.SPIMAcquisition.access$600(SPIMAcquisition.java:91) [ ] at spim.SPIMAcquisition$19.run(SPIMAcquisition.java:1038) [ ] at java.util.TimerThread.mainLoop(Timer.java:512) [ ] at java.util.TimerThread.run(Timer.java:462)