<div dir="ltr"><div class="gmail_quote">---------- Forwarded message ----------<br>From: "G.D. Marquart" <<a href="mailto:gmarquart@gmail.com">gmarquart@gmail.com</a>><br>To: <a href="mailto:rk685@york.ac.uk">rk685@york.ac.uk</a>, <br>Cc: <br>Date: Tue, 3 Mar 2015 13:37:09 -0500<br>Subject: Re: OpenSPIM Digest, Vol 23, Issue 2<br><div dir="ltr">Hey Rob,<div><br></div><div>Someone more knowledgeable feel free to correct me, but...</div><div><br></div><div>I believe the SPIMAcq won't work with any laser but those specifically defined in the code (or with variables identical to those in src/main/java/spim/setup/Laser.java). So in order to get your laser working in the plugin, I believe you'll have to download the source for the <a href="https://github.com/openspim/SPIMAcquisition" target="_blank">SPIMAcq plugin</a>, make a java profile similar to <a href="https://github.com/openspim/SPIMAcquisition/blob/master/src/main/java/spim/setup/Cobolt.java" target="_blank">this</a> for your OBIS using variable names you can find <a href="https://github.com/hadim/micromanager/blob/96f12e31227b2173b98093036c735a6f42b5516e/DeviceAdapters/CoherentOBIS/CoherentOBIS.cpp" target="_blank">here</a>, place that new file in the appropriate folder (src/main/java/setup/) and then compile it yourself (using maven). Because it's still a Coherent laser and they appear to use the same variable names to address the laser, I think you can just copy the CoherentCube.java file, rename where you see CoherentCube to OBIS, and rename the file to OBIS.java. </div><div><br></div><div>To compile, you'll need Maven which you can get <a href="http://maven.apache.org/download.cgi" target="_blank">here</a> (need to setup a number of user variables to get it to run, see installation instructions). once maven is installed, copy the SPIMAcq source from the git repository into Fiji.app/plugins/Micro-Manager and run the following commands (in cmd.exe) from that directory to compile.</div><div><br></div><div><p class="MsoNormal" style="margin-bottom:0.0001pt">mvn
install:install-file -DgroupId=org.micromanager -Dversion=1.4.20-SNAPSHOT
-Dpackaging=jar -DartifactId=MMJ_ -Dfile=MMJ_.jar</p>
<p class="MsoNormal" style="margin-bottom:0.0001pt">mvn
install:install-file -DgroupId=org.micromanager -Dversion=1.4.20-SNAPSHOT
-Dpackaging=jar -DartifactId=MMCoreJ -Dfile=MMCoreJ.jar</p>
<p class="MsoNormal" style="margin-bottom:0.0001pt">mvn
-Dscijava.enforce.skip</p><p class="MsoNormal" style="margin-bottom:0.0001pt"><br></p><p class="MsoNormal" style="margin-bottom:0.0001pt">This should create a SPIMAcq that now supports your laser that you can copy into the appropriate folder in Fiji.</p><p class="MsoNormal" style="margin-bottom:0.0001pt"><br></p><p class="MsoNormal" style="margin-bottom:0.0001pt">Hope this helps,</p><p class="MsoNormal" style="margin-bottom:0.0001pt"><br></p><p class="MsoNormal" style="margin-bottom:0.0001pt">Graham</p></div></div><div class="gmail_extra"><br><div class="gmail_quote">On Tue, Mar 3, 2015 at 1:00 PM, <a href="mailto:openspim-request@openspim.org" target="_blank">openspim-request@openspim.org</a> <span dir="ltr"><<a href="mailto:openspim-request@openspim.org" target="_blank">openspim-request@openspim.org</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">Send OpenSPIM mailing list submissions to<br>
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Today's Topics:<br>
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1. OpenSPIM plugin does not allow to control laser<br>
(Robert Konstandelos)<br>
<br>
<br>
----------------------------------------------------------------------<br>
<br>
Message: 1<br>
Date: Tue, 3 Mar 2015 13:52:48 +0000<br>
From: Robert Konstandelos <<a href="mailto:rk685@york.ac.uk" target="_blank">rk685@york.ac.uk</a>><br>
To: <a href="mailto:openspim@openspim.org" target="_blank">openspim@openspim.org</a><br>
Subject: [OpenSPIM] OpenSPIM plugin does not allow to control laser<br>
Message-ID:<br>
<<a href="mailto:CALKrRTGuUBTOvhVfbNS8QP9pEfB2pMUnJYb5dn2gVkZOsiRmdQ@mail.gmail.com" target="_blank">CALKrRTGuUBTOvhVfbNS8QP9pEfB2pMUnJYb5dn2gVkZOsiRmdQ@mail.gmail.com</a>><br>
Content-Type: text/plain; charset="utf-8"<br>
<br>
Hello,<br>
<br>
I am having an issue with the OpenSPIM plugin as it does not allow me to<br>
control my coherent obis laser through this application. The app constantly<br>
says my power is zero and whenever I try to change the setting it returns<br>
to zero even when it is on!<br>
<br>
I am just wondering whether there is a way that this can be fixed. I have<br>
the correct settings specified on the micromanager page for the coherent<br>
obis so I am wondering whether there maybe something I have missed.<br>
<br>
Any help would be much appreciated.<br>
<br>
Thanks<br>
<br>
Rob<br>
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End of OpenSPIM Digest, Vol 23, Issue 2<br>
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