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<div>Hello Dylan,</div>
<div><br></div>
<div>just to confirm - have you followed the instructions at <a href="http://openspim.org/64bit_OpenSPIM">http://openspim.org/64bit_OpenSPIM</a> or which ones?</div>
<div>It’s quite important that you install the latest Andor Driver Pack and turn off Link State Power Management as indicated on the wiki page.</div>
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<div>cheers,</div>
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<div>ulrik</div>
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<div>Ulrik Günther, Dipl.-Phys.<br>PhD Student<br>MOSAIC Group & Tomancak Lab, Center of Systems Biology Dresden</div>
<div>Max Planck Institute of Molecular Cell Biology and Genetics<br>Pfotenhauerstr. 108, D-01307 Dresden, Germany</div>
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<div style="color: rgb(54, 61, 76);"><br></div>
<div style="color: rgb(54, 61, 76);">E-Mail: guenther@mpi-cbg.de<br>
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<div>On Jan 28, 2015, at 1:00 PM, Johannes Schindelin <johannes.schindelin@gmx.de> wrote:</div>
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<div style="orphans: auto; text-align: start; widows: auto;">Hi Dylan,</div>
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<div style="orphans: auto; text-align: start; widows: auto;">I Cc:ed the mailing list again so that the OpenSPIM community knows<span class="Apple-converted-space"> </span><br>about your kind offer. For future record, I would also like to ask<span class="Apple-converted-space"> </span><br>keeping communication with me on public record (unless there are good<span class="Apple-converted-space"> </span><br>reasons to take the conversation private, of course).</div>
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<div style="orphans: auto; text-align: start; widows: auto;">On 2015-01-27 12:26, Windell, Dylan wrote:</div>
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<div>Dear Johannes,</div>
<div><br></div>
<div>Thank you very much for the email and information.</div>
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<div>I followed all the steps once again and installed mfiji in a different<br>directory and now the plugin works, I have attached all the log files<br>I could find anyway, the first one is of the failed version this<br>morning and the second two are the successful ones. I had tried to<br>update ImageJ in one version but there were a list of duplicate<br>plugins.</div>
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<div>However, if I try and acquire any images I just get black or blank<br>pictures, this error comes up when I try and calibrate the pixel size:</div>
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<div>(Fiji Is Just) ImageJ 2.0.0-rc-13/1.49e; Java 1.6.0_31 [64-bit];<br>Windows 7 6.1; 128MB of 2000MB (6%)</div>
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<div>java.lang.Exception: Internal inconsistency: unknown system exception<br>encountered<br>at mmcorej.MMCoreJJNI.CMMCore_snapImage(Native Method)<br>at mmcorej.CMMCore.snapImage(CMMCore.java:813)<br>at<span class="Apple-converted-space"> </span><br>spim.PixelSizeCalibrator.fetchFreshImage(PixelSizeCalibrator.java:308)<br>at spim.PixelSizeCalibrator.<init>(PixelSizeCalibrator.java:160)<br>at spim.SPIMAcquisition$2.actionPerformed(SPIMAcquisition.java:395)<br>at javax.swing.AbstractButton.fireActionPerformed(Unknown Source)<br>at javax.swing.AbstractButton$Handler.actionPerformed(Unknown Source)<br>at javax.swing.DefaultButtonModel.fireActionPerformed(Unknown Source)<br>at javax.swing.DefaultButtonModel.setPressed(Unknown Source)<br>at javax.swing.plaf.basic.BasicButtonListener.mouseReleased(Unknown<span class="Apple-converted-space"> </span><br>Source)<br>at java.awt.Component.processMouseEvent(Unknown Source)<br>at javax.swing.JComponent.processMouseEvent(Unknown Source)<br>at java.awt.Component.processEvent(Unknown Source)<br>at java.awt.Container.processEvent(Unknown Source)<br>at java.awt.Component.dispatchEventImpl(Unknown Source)<br>at java.awt.Container.dispatchEventImpl(Unknown Source)<br>at java.awt.Component.dispatchEvent(Unknown Source)<br>at java.awt.LightweightDispatcher.retargetMouseEvent(Unknown Source)<br>at java.awt.LightweightDispatcher.processMouseEvent(Unknown Source)<br>at java.awt.LightweightDispatcher.dispatchEvent(Unknown Source)<br>at java.awt.Container.dispatchEventImpl(Unknown Source)<br>at java.awt.Window.dispatchEventImpl(Unknown Source)<br>at java.awt.Component.dispatchEvent(Unknown Source)<br>at java.awt.EventQueue.dispatchEventImpl(Unknown Source)<br>at java.awt.EventQueue.access$000(Unknown Source)<br>at java.awt.EventQueue$1.run(Unknown Source)<br>at java.awt.EventQueue$1.run(Unknown Source)<br>at java.security.AccessController.doPrivileged(Native Method)<br>at<span class="Apple-converted-space"> </span><br>java.security.AccessControlContext$1.doIntersectionPrivilege(Unknown<span class="Apple-converted-space"> </span><br>Source)<br>at<span class="Apple-converted-space"> </span><br>java.security.AccessControlContext$1.doIntersectionPrivilege(Unknown<span class="Apple-converted-space"> </span><br>Source)<br>at java.awt.EventQueue$2.run(Unknown Source)<br>at java.awt.EventQueue$2.run(Unknown Source)<br>at java.security.AccessController.doPrivileged(Native Method)<br>at<span class="Apple-converted-space"> </span><br>java.security.AccessControlContext$1.doIntersectionPrivilege(Unknown<span class="Apple-converted-space"> </span><br>Source)<br>at java.awt.EventQueue.dispatchEvent(Unknown Source)<br>at java.awt.EventDispatchThread.pumpOneEventForFilters(Unknown Source)<br>at java.awt.EventDispatchThread.pumpEventsForFilter(Unknown Source)<br>at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown Source)<br>at java.awt.EventDispatchThread.pumpEvents(Unknown Source)<br>at java.awt.EventDispatchThread.pumpEvents(Unknown Source)<br>at java.awt.EventDispatchThread.run(Unknown Source)</div>
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<div>I have contacted Andor to find out if there is something I am missing<br>regarding the camera setup.</div>
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<div>Thank you very much for taking the time to look into this, I do hope<br>one day I will be able to help others with related issues.</div>
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<div>Kind regards,</div>
<div><br></div>
<div>Dylan</div>
<div><br></div>
<div>Dylan Windell<br>Postgraduate Researcher<br>College of Life and Environmental Sciences<br>University of Exeter, Geoffrey Pope<br>Stocker Road, Exeter EX4 4QD, UK<br>phone: +44 (0) 7596725056<br>email: dw388@exeter.ac.uk</div>
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<div>-----Original Message-----<br>From: Johannes Schindelin [mailto:johannes.schindelin@gmx.de]<br>Sent: 26 January 2015 23:50<br>To: Windell, Dylan<br>Cc: openspim-owner@openspim.org; openspim@openspim.org<br>Subject: Re: Micro-Manager Issue</div>
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<div>Hi Dylan,</div>
<div><br></div>
<div>On 2015-01-26 18:55, Windell, Dylan wrote:</div>
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<div>I am having trouble sending an email which I have attached below to<br>the normal mailing address, I have registered on the site under this<br>email account so I am not sure what is the problem.</div>
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<div>Unfortunately I cannot see the mail. And I could not see any previous<br>attempts to subscribe, either, so I allowed myself to subscribe you<br>directly.</div>
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<div>After reading the recent post regarding SPIM at x64, I am trying to<br>get MM to work on my Windows 7 OS working at 64-bit but thus far I<br>have not been able to.</div>
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<div>Please provide the full information, including all relevant log files<br>that you can find. Even if they do not make sense to you, they might<br>help others to help you.</div>
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<div>I have installed my Andor drivers and followed the steps to install<br>all the software but despite the new SPIM plugin, it does not run at<br>all.</div>
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<div>Again, a detailed error report is required to help you. If<br>Micro-Manager crashes, or if it shows you an error message, or if<br>another message pops up; all of that is crucial information that is<br>required to help you make sense of the problem and resolve it.</div>
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<div>In addition, when trying to load my<br>configuration the program continues to freeze and crash.</div>
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<div>That description is unfortunately not precise enough to identify the<br>problem. You probably have a CoreLog in your OpenSPIM.app/CoreLogs/<br>directory that should shed light into the issues.</div>
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<div>I know it is still not yet finished being fixed but I was just<br>wandering if there is a temporary fix for this?</div>
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<div>Unfortunately, it is not possible with specific information (such as<br>the information provided by the CoreLog) to know enough about the<br>problem in order to assess any possible fix. Please copy & paste<br>precise error messages whenever possible, otherwise write them into a<br>mail as faithfully as possible, and attach the relevant (parts of the)<br>CoreLog.</div>
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<div>Once you do that, I am confident that you will find the OpenSPIM<br>community to be helpful in getting your system to work, hopefully so<br>much that you also help others to get their systems to work, too.</div>
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<div>Ciao,<br>Johannes</div>
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<div style="orphans: auto; text-align: start; widows: auto;">_______________________________________________<br>OpenSPIM mailing list<br>OpenSPIM@openspim.org<br>http://openspim.org/mailman/listinfo/openspim</div>
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