<html>
<head>
<meta content="text/html; charset=ISO-8859-1"
http-equiv="Content-Type">
</head>
<body bgcolor="#FFFFFF" text="#000000">
<div class="moz-cite-prefix">Hi Veli-Pekka,<br>
<br>
On 8/18/2014 4:18 AM, Veli-Pekka Ronkainen wrote:<br>
<blockquote
cite="mid:bb240d237c444885b514db787456243c@nippu12.univ.yo.oulu.fi"
type="cite">
<div
style="font-size:12pt;color:#000000;background-color:#FFFFFF;font-family:Calibri,Arial,Helvetica,sans-serif;">
<div style="font-size:12pt; color:#000000;
background-color:#FFFFFF;
font-family:Calibri,Arial,Helvetica,sans-serif">
<p>Hi Luke,</p>
<p><br>
</p>
<p>Thanks for your reply! I attach here different CoreLogs
created by two different software versions:</p>
</div>
</div>
</blockquote>
Thanks! These have really helped.<br>
<br>
<blockquote
cite="mid:bb240d237c444885b514db787456243c@nippu12.univ.yo.oulu.fi"
type="cite">
<div
style="font-size:12pt;color:#000000;background-color:#FFFFFF;font-family:Calibri,Arial,Helvetica,sans-serif;">
<div style="font-size:12pt; color:#000000;
background-color:#FFFFFF;
font-family:Calibri,Arial,Helvetica,sans-serif">
<p> </p>
<p>The first CoreLog pid3156 is generated by the latest SW
version. Here we tried to make a new configuration and
adding/editing Picard Z-stage is not possible
[IFO,dev:Picard Z Stage] Could not initialize motor -1
(PiUsb error code 1). </p>
</div>
</div>
</blockquote>
From the core log, I see the line "2014-08-18T09:27:19.082080
tid860 [IFO,dev:Picard Twister] Found 0 motors and 1 twisters." --
in essence, it isn't finding any of your stages. Probably this is
because the version of mmgr_dal_PicardStage.dll is out-of-date,
and only checks the serial numbers up to 250. (A newer version is
available in vanilla Micro-Manager that checks up to 500, and I've
been looking into a more reasonable detector that should discover
any regardless of serial number...) I will try to upload a newer
version of the DAL to the update site, once I'm sure it's
compatible.<br>
<br>
<blockquote
cite="mid:bb240d237c444885b514db787456243c@nippu12.univ.yo.oulu.fi"
type="cite">
<div
style="font-size:12pt;color:#000000;background-color:#FFFFFF;font-family:Calibri,Arial,Helvetica,sans-serif;">
<div style="font-size:12pt; color:#000000;
background-color:#FFFFFF;
font-family:Calibri,Arial,Helvetica,sans-serif">
<p> </p>
<p>The next one pid4032 is generated by the same SW version,
and we tried to modify an existing older .cfg-file which
is also attached here. </p>
</div>
</div>
</blockquote>
Another odd issue. I think it's related, but I'm not totally sure
how -- something about the first failure to communicate with the
stage seems to trigger a series of Java errors referring to the
rest of the devices in the configuration (I think).<br>
<br>
<blockquote
cite="mid:bb240d237c444885b514db787456243c@nippu12.univ.yo.oulu.fi"
type="cite">
<div
style="font-size:12pt;color:#000000;background-color:#FFFFFF;font-family:Calibri,Arial,Helvetica,sans-serif;">
<div style="font-size:12pt; color:#000000;
background-color:#FFFFFF;
font-family:Calibri,Arial,Helvetica,sans-serif">
<p> </p>
<p>The last CoreLog (no pid number) is generated by the
non-updated SW version downloaded from openspim.org. Here
everything is fine. <br>
</p>
<p> <br>
</p>
<p>There is no possibility to edit the old .cfg-file with
notepad like you suggested, since there is no
mention about the Twister step size. Maybe because there
is no possibility to edit step sizes in the older SW
version, only serial numbers? <br>
</p>
</div>
</div>
</blockquote>
You're probably right. It may work to simply add the line I
mentioned, only with the '1' instead of '1.8'. (Again, this isn't
a fix for the underlying problem, but I'll be looking at that.)<br>
<br>
I hope this all helps, and I'll see what I can do about causing a
more permanent change. Thanks!<br>
<br>
Luke<br>
<br>
On 8/18/2014 4:18 AM, Veli-Pekka Ronkainen wrote:<br>
</div>
<blockquote
cite="mid:bb240d237c444885b514db787456243c@nippu12.univ.yo.oulu.fi"
type="cite">
<meta http-equiv="Content-Type" content="text/html;
charset=ISO-8859-1">
<style type="text/css" style="display:none"><!--P{margin-top:0;margin-bottom:0;} .ms-cui-menu {background-color:#ffffff;border:1px rgb(171, 171, 171) solid;font-family:'Segoe UI WPC','Segoe UI',Tahoma,'Microsoft Sans Serif',Verdana,sans-serif;font-size:10pt;color:rgb(51, 51, 51);} .ms-cui-menusection-title {display:none;} .ms-cui-ctl {vertical-align:text-top;text-decoration:none;color:rgb(51, 51, 51);} .ms-cui-ctl-on {background-color:rgb(223, 237, 250);opacity: 0.8;} .ms-cui-img-cont-float {display:inline-block;margin-top:2px} .ms-cui-smenu-inner {padding-top:0px;} .ms-owa-paste-option-icon {margin: 2px 4px 0px 4px;vertical-align:sub;padding-bottom: 2px;display:inline-block;} .ms-rtePasteFlyout-option:hover {background-color:rgb(223, 237, 250) !important;opacity:1 !important;} .ms-rtePasteFlyout-option {padding:8px 4px 8px 4px;outline:none;} .ms-cui-menusection {float:left; width:85px;height:24px;overflow:hidden}.wf {speak:none; font-weight:normal; font-variant:normal; text-t
ransform:none; -webkit-font-smoothing:antialiased; vertical-align:middle; display:inline-block;}.wf-family-owa {font-family:'o365Icons'}@font-face { font-family:'o365IconsIE8'; src:url('prem/15.0.913.22/resources/styles/office365icons.ie8.eot?#iefix') format('embedded-opentype'), url('prem/15.0.913.22/resources/styles/office365icons.ie8.woff') format('woff'), url('prem/15.0.913.22/resources/styles/office365icons.ie8.ttf') format('truetype'); font-weight:normal; font-style:normal;}@font-face { font-family:'o365IconsMouse'; src:url('prem/15.0.913.22/resources/styles/office365icons.mouse.eot?#iefix') format('embedded-opentype'), url('prem/15.0.913.22/resources/styles/office365icons.mouse.woff') format('woff'), url('prem/15.0.913.22/resources/styles/office365icons.mouse.ttf') format('truetype'); font-weight:normal; font-style:normal;}.wf-family-owa {font-family:'o365IconsMouse'}.ie8 .wf-family-owa {font-family:'o365IconsIE8'}.ie8 .wf-owa-play-larg
e
:before {content:'\e254';}.notIE8 .wf-owa-play-large:before {content:'\e054';}.ie8 .wf-owa-play-large {color:#FFFFFF/*$WFWhiteColor*/;}.notIE8 .wf-owa-play-large {border-color:#FFFFFF/*$WFWhiteColor*/; width:1.4em; height:1.4em; border-width:.1em; border-style:solid; border-radius:.8em; text-align:center; box-sizing:border-box; -moz-box-sizing:border-box; padding:0.1em; color:#FFFFFF/*$WFWhiteColor*/;}.ie8 .wf-size-play-large {width:40px; height:40px; font-size:30px}.notIE8 .wf-size-play-large {width:40px; height:40px; font-size:30px}
<!--
p
{margin-top:0;
margin-bottom:0}
.ms-cui-menu
{background-color:#ffffff;
border:1px rgb(171,171,171) solid;
font-family:'Segoe UI WPC','Segoe UI',Tahoma,'Microsoft Sans Serif',Verdana,sans-serif;
font-size:10pt;
color:rgb(51,51,51)}
.ms-cui-menusection-title
{}
.ms-cui-ctl
{vertical-align:text-top;
text-decoration:none;
color:rgb(51,51,51)}
.ms-cui-ctl-on
{background-color:rgb(223,237,250)}
.ms-cui-img-cont-float
{display:inline-block;
margin-top:2px}
.ms-cui-smenu-inner
{padding-top:0px}
.ms-owa-paste-option-icon
{margin:2px 4px 0px 4px;
vertical-align:sub;
padding-bottom:2px;
display:inline-block}
.ms-rtePasteFlyout-option
{padding:8px 4px 8px 4px;
outline:none}
.ms-cui-menusection
{float:left;
width:85px;
height:24px;
overflow:hidden}
.wf
{speak:none;
font-weight:normal;
font-variant:normal;
text-transform:none;
vertical-align:middle;
display:inline-block}
.wf-family-owa
{font-family:'o365Icons'}
@font-face
{font-family:'o365IconsIE8';
font-weight:normal;
font-style:normal}
@font-face
{font-family:'o365IconsMouse';
font-weight:normal;
font-style:normal}
.wf-family-owa
{font-family:'o365IconsMouse'}
.ie8 .wf-family-owa
{font-family:'o365IconsIE8'}
.notIE8 .wf-owa-play-large
{border-color:#FFFFFF;
width:1.4em;
height:1.4em;
border-width:.1em;
border-style:solid;
text-align:center;
padding:0.1em;
color:#FFFFFF}
.ie8 .wf-size-play-large
{width:40px;
height:40px;
font-size:30px}
.notIE8 .wf-size-play-large
{width:40px;
height:40px;
font-size:30px}
p
{margin-top:0;
margin-bottom:0}
.ms-cui-menu
{background-color:#ffffff;
border:1px rgb(171,171,171) solid;
font-family:'segoe ui wpc','segoe ui',tahoma,'microsoft sans serif',verdana,sans-serif;
font-size:10pt;
color:rgb(51,51,51)}
.ms-cui-ctl
{vertical-align:text-top;
text-decoration:none;
color:rgb(51,51,51)}
.ms-cui-ctl-on
{background-color:rgb(223,237,250)}
.ms-cui-img-cont-float
{display:inline-block;
margin-top:2px}
.ms-cui-smenu-inner
{padding-top:0px}
.ms-owa-paste-option-icon
{margin:2px 4px 0px 4px;
vertical-align:sub;
padding-bottom:2px;
display:inline-block}
.ms-rtepasteflyout-option
{padding:8px 4px 8px 4px;
outline:none}
.ms-cui-menusection
{float:left;
width:85px;
height:24px;
overflow:hidden}
.wf-family-owa
{font-family:'o365icons'}
@font-face
{font-family:'o365iconsie8';
font-weight:normal;
font-style:normal}
@font-face
{font-family:'o365iconsmouse';
font-weight:normal;
font-style:normal}
.wf-family-owa
{font-family:'o365iconsmouse'}
.ie8 .wf-family-owa
{font-family:'o365iconsie8'}
.ie8 .wf-owa-play-large
{color:#ffffff}
.notie8 .wf-owa-play-large
{border-color:#ffffff;
width:1.4em;
height:1.4em;
border-width:.1em;
border-style:solid;
text-align:center;
padding:0.1em;
color:#ffffff}
.ie8 .wf-size-play-large
{width:40px;
height:40px;
font-size:30px}
.notie8 .wf-size-play-large
{width:40px;
height:40px;
font-size:30px}
.ms-cui-menu
{background-color:#ffffff;
border:1px rgb(171,171,171) solid;
font-family:'segoe ui wpc','segoe ui',tahoma,'microsoft sans serif',verdana,sans-serif;
font-size:10pt;
color:rgb(51,51,51)}
.ms-cui-ctl
{vertical-align:text-top;
text-decoration:none;
color:rgb(51,51,51)}
.ms-cui-ctl-on
{background-color:rgb(223,237,250)}
.ms-cui-img-cont-float
{display:inline-block;
margin-top:2px}
.ms-cui-smenu-inner
{padding-top:0px}
.ms-owa-paste-option-icon
{margin:2px 4px 0px 4px;
vertical-align:sub;
padding-bottom:2px;
display:inline-block}
.ms-rtepasteflyout-option
{padding:8px 4px 8px 4px;
outline:none}
.ms-cui-menusection
{float:left;
width:85px;
height:24px;
overflow:hidden}
.wf
{speak:none;
font-weight:normal;
font-variant:normal;
text-transform:none;
vertical-align:middle;
display:inline-block}
.wf-family-owa
{font-family:'o365icons'}
@font-face
{font-family:'o365iconsie8';
font-weight:normal;
font-style:normal}
@font-face
{font-family:'o365iconsmouse';
font-weight:normal;
font-style:normal}
.wf-family-owa
{font-family:'o365iconsmouse'}
.ie8 .wf-family-owa
{font-family:'o365iconsie8'}
.notie8 .wf-owa-play-large
{border-color:#ffffff;
width:1.4em;
height:1.4em;
border-width:.1em;
border-style:solid;
text-align:center;
padding:0.1em;
color:#ffffff}
.ie8 .wf-size-play-large
{width:40px;
height:40px;
font-size:30px}
.notie8 .wf-size-play-large
{width:40px;
height:40px;
font-size:30px}
p
{margin-top:0;
margin-bottom:0}
.ms-cui-menu
{background-color:#ffffff;
border:1px rgb(171,171,171) solid;
font-family:'segoe ui wpc','segoe ui',tahoma,'microsoft sans serif',verdana,sans-serif;
font-size:10pt;
color:rgb(51,51,51)}
.ms-cui-ctl
{vertical-align:text-top;
text-decoration:none;
color:rgb(51,51,51)}
.ms-cui-ctl-on
{background-color:rgb(223,237,250)}
.ms-cui-img-cont-float
{display:inline-block;
margin-top:2px}
.ms-cui-smenu-inner
{padding-top:0px}
.ms-owa-paste-option-icon
{margin:2px 4px 0px 4px;
vertical-align:sub;
padding-bottom:2px;
display:inline-block}
.ms-rtepasteflyout-option
{padding:8px 4px 8px 4px;
outline:none}
.ms-cui-menusection
{float:left;
width:85px;
height:24px;
overflow:hidden}
.wf
{speak:none;
font-weight:normal;
font-variant:normal;
text-transform:none;
vertical-align:middle;
display:inline-block}
.wf-family-owa
{font-family:'o365icons'}
@font-face
{font-family:'o365iconsie8';
font-weight:normal;
font-style:normal}
@font-face
{font-family:'o365iconsmouse';
font-weight:normal;
font-style:normal}
.wf-family-owa
{font-family:'o365iconsmouse'}
.ie8 .wf-family-owa
{font-family:'o365iconsie8'}
.notie8 .wf-owa-play-large
{border-color:#ffffff;
width:1.4em;
height:1.4em;
border-width:.1em;
border-style:solid;
text-align:center;
padding:0.1em;
color:#ffffff}
.ie8 .wf-size-play-large
{width:40px;
height:40px;
font-size:30px}
.notie8 .wf-size-play-large
{width:40px;
height:40px;
font-size:30px}
-->
<!--
p
{margin-top:0;
margin-bottom:0}
.ms-cui-menu
{background-color:#ffffff;
border:1px rgb(171,171,171) solid;
font-family:'segoe ui wpc','segoe ui',tahoma,'microsoft sans serif',verdana,sans-serif;
font-size:10pt;
color:rgb(51,51,51)}
.ms-cui-ctl
{vertical-align:text-top;
text-decoration:none;
color:rgb(51,51,51)}
.ms-cui-ctl-on
{background-color:rgb(223,237,250)}
.ms-cui-img-cont-float
{display:inline-block;
margin-top:2px}
.ms-cui-smenu-inner
{padding-top:0px}
.ms-owa-paste-option-icon
{margin:2px 4px 0px 4px;
vertical-align:sub;
padding-bottom:2px;
display:inline-block}
.ms-rtepasteflyout-option
{padding:8px 4px 8px 4px;
outline:none}
.ms-cui-menusection
{float:left;
width:85px;
height:24px;
overflow:hidden}
.wf-family-owa
{font-family:'o365icons'}
@font-face
{font-family:'o365iconsie8';
font-weight:normal;
font-style:normal}
@font-face
{font-family:'o365iconsmouse';
font-weight:normal;
font-style:normal}
.wf-family-owa
{font-family:'o365iconsmouse'}
.ie8 .wf-family-owa
{font-family:'o365iconsie8'}
.ie8 .wf-owa-play-large
{color:#ffffff}
.notie8 .wf-owa-play-large
{border-color:#ffffff;
width:1.4em;
height:1.4em;
border-width:.1em;
border-style:solid;
text-align:center;
padding:0.1em;
color:#ffffff}
.ie8 .wf-size-play-large
{width:40px;
height:40px;
font-size:30px}
.notie8 .wf-size-play-large
{width:40px;
height:40px;
font-size:30px}
.ms-cui-menu
{background-color:#ffffff;
border:1px rgb(171,171,171) solid;
font-family:'segoe ui wpc','segoe ui',tahoma,'microsoft sans serif',verdana,sans-serif;
font-size:10pt;
color:rgb(51,51,51)}
.ms-cui-ctl
{vertical-align:text-top;
text-decoration:none;
color:rgb(51,51,51)}
.ms-cui-ctl-on
{background-color:rgb(223,237,250)}
.ms-cui-img-cont-float
{display:inline-block;
margin-top:2px}
.ms-cui-smenu-inner
{padding-top:0px}
.ms-owa-paste-option-icon
{margin:2px 4px 0px 4px;
vertical-align:sub;
padding-bottom:2px;
display:inline-block}
.ms-rtepasteflyout-option
{padding:8px 4px 8px 4px;
outline:none}
.ms-cui-menusection
{float:left;
width:85px;
height:24px;
overflow:hidden}
.wf
{speak:none;
font-weight:normal;
font-variant:normal;
text-transform:none;
vertical-align:middle;
display:inline-block}
.wf-family-owa
{font-family:'o365icons'}
@font-face
{font-family:'o365iconsie8';
font-weight:normal;
font-style:normal}
@font-face
{font-family:'o365iconsmouse';
font-weight:normal;
font-style:normal}
.wf-family-owa
{font-family:'o365iconsmouse'}
.ie8 .wf-family-owa
{font-family:'o365iconsie8'}
.notie8 .wf-owa-play-large
{border-color:#ffffff;
width:1.4em;
height:1.4em;
border-width:.1em;
border-style:solid;
text-align:center;
padding:0.1em;
color:#ffffff}
.ie8 .wf-size-play-large
{width:40px;
height:40px;
font-size:30px}
.notie8 .wf-size-play-large
{width:40px;
height:40px;
font-size:30px}
-->
<!--
p
{margin-top:0;
margin-bottom:0}
.ms-cui-menu
{background-color:#ffffff;
border:1px rgb(171,171,171) solid;
font-family:'segoe ui wpc','segoe ui',tahoma,'microsoft sans serif',verdana,sans-serif;
font-size:10pt;
color:rgb(51,51,51)}
.ms-cui-ctl
{vertical-align:text-top;
text-decoration:none;
color:rgb(51,51,51)}
.ms-cui-ctl-on
{background-color:rgb(223,237,250)}
.ms-cui-img-cont-float
{display:inline-block;
margin-top:2px}
.ms-cui-smenu-inner
{padding-top:0px}
.ms-owa-paste-option-icon
{margin:2px 4px 0px 4px;
vertical-align:sub;
padding-bottom:2px;
display:inline-block}
.ms-rtepasteflyout-option
{padding:8px 4px 8px 4px;
outline:none}
.ms-cui-menusection
{float:left;
width:85px;
height:24px;
overflow:hidden}
.wf
{speak:none;
font-weight:normal;
font-variant:normal;
text-transform:none;
vertical-align:middle;
display:inline-block}
.wf-family-owa
{font-family:'o365icons'}
@font-face
{font-family:'o365iconsie8';
font-weight:normal;
font-style:normal}
@font-face
{font-family:'o365iconsmouse';
font-weight:normal;
font-style:normal}
.wf-family-owa
{font-family:'o365iconsmouse'}
.ie8 .wf-family-owa
{font-family:'o365iconsie8'}
.notie8 .wf-owa-play-large
{border-color:#ffffff;
width:1.4em;
height:1.4em;
border-width:.1em;
border-style:solid;
text-align:center;
padding:0.1em;
color:#ffffff}
.ie8 .wf-size-play-large
{width:40px;
height:40px;
font-size:30px}
.notie8 .wf-size-play-large
{width:40px;
height:40px;
font-size:30px}
-->
--></style>
<div
style="font-size:12pt;color:#000000;background-color:#FFFFFF;font-family:Calibri,Arial,Helvetica,sans-serif;">
<style type="text/css" style="">
<!--
p
{margin-top:0;
margin-bottom:0}
.ms-cui-menu
{background-color:#ffffff;
border:1px rgb(171,171,171) solid;
font-family:'Segoe UI WPC','Segoe UI',Tahoma,'Microsoft Sans Serif',Verdana,sans-serif;
font-size:10pt;
color:rgb(51,51,51)}
.ms-cui-menusection-title
{}
.ms-cui-ctl
{vertical-align:text-top;
text-decoration:none;
color:rgb(51,51,51)}
.ms-cui-ctl-on
{background-color:rgb(223,237,250)}
.ms-cui-img-cont-float
{display:inline-block;
margin-top:2px}
.ms-cui-smenu-inner
{padding-top:0px}
.ms-owa-paste-option-icon
{margin:2px 4px 0px 4px;
vertical-align:sub;
padding-bottom:2px;
display:inline-block}
.ms-rtePasteFlyout-option
{padding:8px 4px 8px 4px;
outline:none}
.ms-cui-menusection
{float:left;
width:85px;
height:24px;
overflow:hidden}
.wf
{speak:none;
font-weight:normal;
font-variant:normal;
text-transform:none;
vertical-align:middle;
display:inline-block}
.wf-family-owa
{font-family:'o365Icons'}
@font-face
{font-family:'o365IconsIE8';
font-weight:normal;
font-style:normal}
@font-face
{font-family:'o365IconsMouse';
font-weight:normal;
font-style:normal}
.wf-family-owa
{font-family:'o365IconsMouse'}
.ie8 .wf-family-owa
{font-family:'o365IconsIE8'}
.notIE8 .wf-owa-play-large
{border-color:#FFFFFF;
width:1.4em;
height:1.4em;
border-width:.1em;
border-style:solid;
text-align:center;
padding:0.1em;
color:#FFFFFF}
.ie8 .wf-size-play-large
{width:40px;
height:40px;
font-size:30px}
.notIE8 .wf-size-play-large
{width:40px;
height:40px;
font-size:30px}
p
{margin-top:0;
margin-bottom:0}
.ms-cui-menu
{background-color:#ffffff;
border:1px rgb(171,171,171) solid;
font-family:'segoe ui wpc','segoe ui',tahoma,'microsoft sans serif',verdana,sans-serif;
font-size:10pt;
color:rgb(51,51,51)}
.ms-cui-ctl
{vertical-align:text-top;
text-decoration:none;
color:rgb(51,51,51)}
.ms-cui-ctl-on
{background-color:rgb(223,237,250)}
.ms-cui-img-cont-float
{display:inline-block;
margin-top:2px}
.ms-cui-smenu-inner
{padding-top:0px}
.ms-owa-paste-option-icon
{margin:2px 4px 0px 4px;
vertical-align:sub;
padding-bottom:2px;
display:inline-block}
.ms-rtepasteflyout-option
{padding:8px 4px 8px 4px;
outline:none}
.ms-cui-menusection
{float:left;
width:85px;
height:24px;
overflow:hidden}
.wf-family-owa
{font-family:'o365icons'}
@font-face
{font-family:'o365iconsie8';
font-weight:normal;
font-style:normal}
@font-face
{font-family:'o365iconsmouse';
font-weight:normal;
font-style:normal}
.wf-family-owa
{font-family:'o365iconsmouse'}
.ie8 .wf-family-owa
{font-family:'o365iconsie8'}
.ie8 .wf-owa-play-large
{color:#ffffff}
.notie8 .wf-owa-play-large
{border-color:#ffffff;
width:1.4em;
height:1.4em;
border-width:.1em;
border-style:solid;
text-align:center;
padding:0.1em;
color:#ffffff}
.ie8 .wf-size-play-large
{width:40px;
height:40px;
font-size:30px}
.notie8 .wf-size-play-large
{width:40px;
height:40px;
font-size:30px}
.ms-cui-menu
{background-color:#ffffff;
border:1px rgb(171,171,171) solid;
font-family:'segoe ui wpc','segoe ui',tahoma,'microsoft sans serif',verdana,sans-serif;
font-size:10pt;
color:rgb(51,51,51)}
.ms-cui-ctl
{vertical-align:text-top;
text-decoration:none;
color:rgb(51,51,51)}
.ms-cui-ctl-on
{background-color:rgb(223,237,250)}
.ms-cui-img-cont-float
{display:inline-block;
margin-top:2px}
.ms-cui-smenu-inner
{padding-top:0px}
.ms-owa-paste-option-icon
{margin:2px 4px 0px 4px;
vertical-align:sub;
padding-bottom:2px;
display:inline-block}
.ms-rtepasteflyout-option
{padding:8px 4px 8px 4px;
outline:none}
.ms-cui-menusection
{float:left;
width:85px;
height:24px;
overflow:hidden}
.wf
{speak:none;
font-weight:normal;
font-variant:normal;
text-transform:none;
vertical-align:middle;
display:inline-block}
.wf-family-owa
{font-family:'o365icons'}
@font-face
{font-family:'o365iconsie8';
font-weight:normal;
font-style:normal}
@font-face
{font-family:'o365iconsmouse';
font-weight:normal;
font-style:normal}
.wf-family-owa
{font-family:'o365iconsmouse'}
.ie8 .wf-family-owa
{font-family:'o365iconsie8'}
.notie8 .wf-owa-play-large
{border-color:#ffffff;
width:1.4em;
height:1.4em;
border-width:.1em;
border-style:solid;
text-align:center;
padding:0.1em;
color:#ffffff}
.ie8 .wf-size-play-large
{width:40px;
height:40px;
font-size:30px}
.notie8 .wf-size-play-large
{width:40px;
height:40px;
font-size:30px}
p
{margin-top:0;
margin-bottom:0}
.ms-cui-menu
{background-color:#ffffff;
border:1px rgb(171,171,171) solid;
font-family:'segoe ui wpc','segoe ui',tahoma,'microsoft sans serif',verdana,sans-serif;
font-size:10pt;
color:rgb(51,51,51)}
.ms-cui-ctl
{vertical-align:text-top;
text-decoration:none;
color:rgb(51,51,51)}
.ms-cui-ctl-on
{background-color:rgb(223,237,250)}
.ms-cui-img-cont-float
{display:inline-block;
margin-top:2px}
.ms-cui-smenu-inner
{padding-top:0px}
.ms-owa-paste-option-icon
{margin:2px 4px 0px 4px;
vertical-align:sub;
padding-bottom:2px;
display:inline-block}
.ms-rtepasteflyout-option
{padding:8px 4px 8px 4px;
outline:none}
.ms-cui-menusection
{float:left;
width:85px;
height:24px;
overflow:hidden}
.wf
{speak:none;
font-weight:normal;
font-variant:normal;
text-transform:none;
vertical-align:middle;
display:inline-block}
.wf-family-owa
{font-family:'o365icons'}
@font-face
{font-family:'o365iconsie8';
font-weight:normal;
font-style:normal}
@font-face
{font-family:'o365iconsmouse';
font-weight:normal;
font-style:normal}
.wf-family-owa
{font-family:'o365iconsmouse'}
.ie8 .wf-family-owa
{font-family:'o365iconsie8'}
.notie8 .wf-owa-play-large
{border-color:#ffffff;
width:1.4em;
height:1.4em;
border-width:.1em;
border-style:solid;
text-align:center;
padding:0.1em;
color:#ffffff}
.ie8 .wf-size-play-large
{width:40px;
height:40px;
font-size:30px}
.notie8 .wf-size-play-large
{width:40px;
height:40px;
font-size:30px}
-->
</style>
<div style="font-size:12pt; color:#000000;
background-color:#FFFFFF;
font-family:Calibri,Arial,Helvetica,sans-serif">
<p>Hi Luke,</p>
<p><br>
</p>
<p>Thanks for your reply! I attach here different CoreLogs
created by two different software versions:</p>
<p><br>
</p>
<p>The first CoreLog pid3156 is generated by the latest SW
version. Here we tried to make a new configuration and
adding/editing Picard Z-stage is not possible
[IFO,dev:Picard Z Stage] Could not initialize motor -1
(PiUsb error code 1). </p>
<p><br>
</p>
<p>The next one pid4032 is generated by the same SW version,
and we tried to modify an existing older .cfg-file which is
also attached here. </p>
<p><br>
</p>
<p>The last CoreLog (no pid number) is generated by the
non-updated SW version downloaded from openspim.org. Here
everything is fine. <br>
</p>
<p> <br>
</p>
<p>There is no possibility to edit the old .cfg-file with
notepad like you suggested, since there is no mention about
the Twister step size. Maybe because there is no
possibility to edit step sizes in the older SW
version, only serial numbers? <br>
</p>
<p><br>
</p>
<p>Regards,</p>
<p>Veli-Pekka<br>
</p>
<p><br>
</p>
<div style="color:rgb(40,40,40)">
<hr tabindex="-1" style="display:inline-block; width:98%">
<div id="divRplyFwdMsg" dir="ltr"><font
style="font-size:11pt" color="#000000" face="Calibri,
sans-serif"><b>Lähettäjä:</b> <a
class="moz-txt-link-abbreviated"
href="mailto:openspim-bounces@openspim.org">openspim-bounces@openspim.org</a>
<a class="moz-txt-link-rfc2396E"
href="mailto:openspim-bounces@openspim.org"><openspim-bounces@openspim.org></a>
käyttäjän puolestaLuke Stuyvenberg <a
class="moz-txt-link-rfc2396E"
href="mailto:stuyvenberg@wisc.edu"><stuyvenberg@wisc.edu></a><br>
<b>Lähetetty:</b> 16. elokuuta 2014 4:10<br>
<b>Vastaanottaja:</b> <a
class="moz-txt-link-abbreviated"
href="mailto:openspim@openspim.org">openspim@openspim.org</a><br>
<b>Aihe:</b> Re: [OpenSPIM] Picard stage error after
update</font>
<div> </div>
</div>
<div>
<div class="moz-cite-prefix">Hi Veli-Pekka,<br>
<br>
On 8/14/2014 7:01 AM, Veli-Pekka Ronkainen wrote:<br>
<blockquote>However, now after using the Fiji updater
Picard USB-stage rotation angle coordinates are not
right anymore. Changing angle from -180 deg to 180 deg
rotates the sample holder only ~180 degrees, and
rotation in general spins the sample much less than
indicated by the slider. In addition, we can not
access and modify old .cfg-files, so that it would be
possible to change step size of the twister from 1.8
to 1, as it was discussed earlier: <a
moz-do-not-send="true"
href="http://openspim.org/pipermail/openspim/2014-July/000482.html">http://openspim.org/pipermail/openspim/2014-July/000482.html</a> .</blockquote>
As you suspected, this is because of the change in step
size.<br>
<br>
<blockquote>Modification of an existing configuration
starts with an error "Error in device Picard Z Stage:
Unable to communicate with the device" followed by
lots of COM and "No device with label _device name_"
-errors. Creating a new configuration doesn't help
since it is not possible to add Picard stage z-axis to
the config file or modify the serial number.
<div style="font-size:12pt; color:#000000;
background-color:#FFFFFF;
font-family:Calibri,Arial,Helvetica,sans-serif">
<div style="font-size:12pt; color:#000000;
background-color:#FFFFFF;
font-family:Calibri,Arial,Helvetica,sans-serif"> </div>
</div>
</blockquote>
The error when modifying a configuration or creating new
configurations is a different problem entirely, and one
I wasn't aware of. If you could, please, attach a
CoreLog or two from after the update, when you've
received these errors. (If you can't tell which one
contains these errors, you can open them and search, or
just run the program again and produce a new one.) This
would go a long way towards figuring out what's causing
this problem.<br>
<br>
But in the meantime, an easy, dirty solution to the
problem interfering with your experiments is to open a
working configuration file in Notepad. You should see a
line in there that reads something like<br>
<br>
"Device,Picard Twister,StepSize,1.8"<br>
<br>
Changing the 1.8 to 1 should resolve at least the
rotational stage problem.<br>
<br>
<blockquote>
<div style="font-size:12pt; color:#000000;
background-color:#FFFFFF;
font-family:Calibri,Arial,Helvetica,sans-serif">
<div style="font-size:12pt; color:#000000;
background-color:#FFFFFF;
font-family:Calibri,Arial,Helvetica,sans-serif">
<p>We've tried to copy the latest Picard
.dll-files from the recent Micro-Manager nightly
build but the problem persists. Are there some
other files we should copy and replace as well?
Of course we can still download and configure
the non-updated package from openspim.org and be
happy using that older version without any
problems. Still it would be nice to be
up-to-date. Anyone having the same problems or
some solutions? Thanks!</p>
</div>
</div>
</blockquote>
You shouldn't need any other files; hopefully the above
is all it takes to get things running until I can figure
out what's causing the trouble with editing
configurations.<br>
<br>
Hope this helps,<br>
Luke Stuyvenberg<br>
<br>
P.S. If you get a few moments, please feel free to
update <a moz-do-not-send="true"
class="moz-txt-link-freetext"
href="http://openspim.org/Who_has_an_OpenSPIM%3F">
http://openspim.org/Who_has_an_OpenSPIM%3F</a> with
your location and information! We love hearing about
people using the system.<br>
<br>
On 8/14/2014 7:01 AM, Veli-Pekka Ronkainen wrote:<br>
</div>
<blockquote>
<style type="text/css" style="">
<!--
p
{margin-top:0;
margin-bottom:0}
.ms-cui-menu
{background-color:#ffffff;
border:1px rgb(171,171,171) solid;
font-family:'segoe ui wpc','segoe ui',tahoma,'microsoft sans serif',verdana,sans-serif;
font-size:10pt;
color:rgb(51,51,51)}
.ms-cui-ctl
{vertical-align:text-top;
text-decoration:none;
color:rgb(51,51,51)}
.ms-cui-ctl-on
{background-color:rgb(223,237,250)}
.ms-cui-img-cont-float
{display:inline-block;
margin-top:2px}
.ms-cui-smenu-inner
{padding-top:0px}
.ms-owa-paste-option-icon
{margin:2px 4px 0px 4px;
vertical-align:sub;
padding-bottom:2px;
display:inline-block}
.ms-rtepasteflyout-option
{padding:8px 4px 8px 4px;
outline:none}
.ms-cui-menusection
{float:left;
width:85px;
height:24px;
overflow:hidden}
.wf-family-owa
{font-family:'o365icons'}
@font-face
{font-family:'o365iconsie8';
font-weight:normal;
font-style:normal}
@font-face
{font-family:'o365iconsmouse';
font-weight:normal;
font-style:normal}
.wf-family-owa
{font-family:'o365iconsmouse'}
.ie8 .wf-family-owa
{font-family:'o365iconsie8'}
.ie8 .wf-owa-play-large
{color:#ffffff}
.notie8 .wf-owa-play-large
{border-color:#ffffff;
width:1.4em;
height:1.4em;
border-width:.1em;
border-style:solid;
text-align:center;
padding:0.1em;
color:#ffffff}
.ie8 .wf-size-play-large
{width:40px;
height:40px;
font-size:30px}
.notie8 .wf-size-play-large
{width:40px;
height:40px;
font-size:30px}
.ms-cui-menu
{background-color:#ffffff;
border:1px rgb(171,171,171) solid;
font-family:'segoe ui wpc','segoe ui',tahoma,'microsoft sans serif',verdana,sans-serif;
font-size:10pt;
color:rgb(51,51,51)}
.ms-cui-ctl
{vertical-align:text-top;
text-decoration:none;
color:rgb(51,51,51)}
.ms-cui-ctl-on
{background-color:rgb(223,237,250)}
.ms-cui-img-cont-float
{display:inline-block;
margin-top:2px}
.ms-cui-smenu-inner
{padding-top:0px}
.ms-owa-paste-option-icon
{margin:2px 4px 0px 4px;
vertical-align:sub;
padding-bottom:2px;
display:inline-block}
.ms-rtepasteflyout-option
{padding:8px 4px 8px 4px;
outline:none}
.ms-cui-menusection
{float:left;
width:85px;
height:24px;
overflow:hidden}
.wf
{speak:none;
font-weight:normal;
font-variant:normal;
text-transform:none;
vertical-align:middle;
display:inline-block}
.wf-family-owa
{font-family:'o365icons'}
@font-face
{font-family:'o365iconsie8';
font-weight:normal;
font-style:normal}
@font-face
{font-family:'o365iconsmouse';
font-weight:normal;
font-style:normal}
.wf-family-owa
{font-family:'o365iconsmouse'}
.ie8 .wf-family-owa
{font-family:'o365iconsie8'}
.notie8 .wf-owa-play-large
{border-color:#ffffff;
width:1.4em;
height:1.4em;
border-width:.1em;
border-style:solid;
text-align:center;
padding:0.1em;
color:#ffffff}
.ie8 .wf-size-play-large
{width:40px;
height:40px;
font-size:30px}
.notie8 .wf-size-play-large
{width:40px;
height:40px;
font-size:30px}
-->
</style>
<div style="font-size:12pt; color:#000000;
background-color:#FFFFFF;
font-family:Calibri,Arial,Helvetica,sans-serif">
<style type="text/css" style="">
<!--
p
{margin-top:0;
margin-bottom:0}
.ms-cui-menu
{background-color:#ffffff;
border:1px rgb(171,171,171) solid;
font-family:'segoe ui wpc','segoe ui',tahoma,'microsoft sans serif',verdana,sans-serif;
font-size:10pt;
color:rgb(51,51,51)}
.ms-cui-ctl
{vertical-align:text-top;
text-decoration:none;
color:rgb(51,51,51)}
.ms-cui-ctl-on
{background-color:rgb(223,237,250)}
.ms-cui-img-cont-float
{display:inline-block;
margin-top:2px}
.ms-cui-smenu-inner
{padding-top:0px}
.ms-owa-paste-option-icon
{margin:2px 4px 0px 4px;
vertical-align:sub;
padding-bottom:2px;
display:inline-block}
.ms-rtepasteflyout-option
{padding:8px 4px 8px 4px;
outline:none}
.ms-cui-menusection
{float:left;
width:85px;
height:24px;
overflow:hidden}
.wf
{speak:none;
font-weight:normal;
font-variant:normal;
text-transform:none;
vertical-align:middle;
display:inline-block}
.wf-family-owa
{font-family:'o365icons'}
@font-face
{font-family:'o365iconsie8';
font-weight:normal;
font-style:normal}
@font-face
{font-family:'o365iconsmouse';
font-weight:normal;
font-style:normal}
.wf-family-owa
{font-family:'o365iconsmouse'}
.ie8 .wf-family-owa
{font-family:'o365iconsie8'}
.notie8 .wf-owa-play-large
{border-color:#ffffff;
width:1.4em;
height:1.4em;
border-width:.1em;
border-style:solid;
text-align:center;
padding:0.1em;
color:#ffffff}
.ie8 .wf-size-play-large
{width:40px;
height:40px;
font-size:30px}
.notie8 .wf-size-play-large
{width:40px;
height:40px;
font-size:30px}
-->
</style>
<div style="font-size:12pt; color:#000000;
background-color:#FFFFFF;
font-family:Calibri,Arial,Helvetica,sans-serif">
<p>Dear all,</p>
<p><br>
</p>
<p>We've been scanning some mouse tissue test
samples with our dual-side illumination
OpenSPIM for a short while now, and we are very
happy with the first results! <br>
</p>
<p><br>
</p>
<p>We have used the original software package
downloaded from openspim.org without any updates,
and it has been working fine. However, now after
using the Fiji updater Picard USB-stage rotation
angle coordinates are not right anymore. Changing
angle from -180 deg to 180 deg rotates the sample
holder only ~180 degrees, and rotation
in general spins the sample much less than
indicated by the slider. In addition, we can not
access and modify old .cfg-files, so that it would
be possible to change step size of the twister
from 1.8 to 1, as it was discussed earlier: <a
moz-do-not-send="true"
href="http://openspim.org/pipermail/openspim/2014-July/000482.html">
http://openspim.org/pipermail/openspim/2014-July/000482.html</a> .
Modification of an existing configuration starts
with an error "Error in device Picard Z Stage:
Unable to communicate with the device" followed by
lots of COM and "No device with label _device
name_" -errors. Creating a new configuration
doesn't help since it is not possible to
add Picard stage z-axis to the config file
or modify the serial number. </p>
<p><br>
</p>
<p>We've tried to copy the latest Picard .dll-files
from the recent Micro-Manager nightly build but
the problem persists. Are there some
other files we should copy and replace as well? Of
course we can still download and configure the
non-updated package from openspim.org and be
happy using that older version without any
problems. Still it would be nice to be up-to-date.
Anyone having the same problems or some solutions?
Thanks!</p>
<p><br>
</p>
<p>Regards,</p>
<p>Veli-Pekka Ronkainen</p>
<p>Light Microscopy Core Facility </p>
<p>Biocenter Oulu, University of Oulu</p>
<p>Finland<br>
</p>
<p><br>
</p>
</div>
</div>
<br>
<fieldset class="mimeAttachmentHeader"></fieldset>
<br>
<pre>_______________________________________________
OpenSPIM mailing list
<a moz-do-not-send="true" class="moz-txt-link-abbreviated" href="mailto:OpenSPIM@openspim.org">OpenSPIM@openspim.org</a>
<a moz-do-not-send="true" class="moz-txt-link-freetext" href="http://openspim.org/mailman/listinfo/openspim">http://openspim.org/mailman/listinfo/openspim</a>
</pre>
</blockquote>
<br>
</div>
</div>
</div>
</div>
</blockquote>
<br>
</body>
</html>