[OpenSPIM] New plugin update, was Re: "Acquire SPIM image" option missing in dropdown menu after Fiji Update

LIM Soon Yew John (IMB) john.lim at imb.a-star.edu.sg
Wed Dec 4 21:57:58 CST 2013


Hi Luke,

After the Fiji update, the "Acuire SPIM image" option now appear normally in the Micro-Manager's "Plugin" dropdown menu.

Thank You.

Best Regards,
John
________________________________________
From: Luke Stuyvenberg [stuyvenberg at wisc.edu]
Sent: Thursday, December 05, 2013 5:27 AM
To: LIM Soon Yew John (IMB); openspim at openspim.org
Subject: New plugin update, was Re: "Acquire SPIM image" option missing in dropdown menu after Fiji Update

Hi John (and all),

You're quite right. A recent update to Fiji upgraded Apache Commons Math to version 3.2, which the plugin (and, in fact, Micromanager) was unprepared to use.


I've corrected the code and uploaded a new version of the plugin and associated Micro-Manager JAR files. Please update Fiji again; the problem should be resolved.


Let me know if you have any further troubles, and thank you for reporting this!


Luke

On 12/01/13, "LIM Soon Yew John (IMB)"  wrote:
> Dear All,
>
> Have anyone encounter this problem that the "Acquire SPIM image" option disappear after running Fiji updates today?
>
> The "Acquire SPIM image" option is missing in the dropdown menu in Micro-Manager after I ran Fiji update today. When I clicked on "Plugins" in the Micro-Manager's menu, the "Acquire SPIM image" option does not appear.
>
> I had also re-downloaded the OpenSPIM/Fiji package as of October 25th, 2013. The "Acquire SPIM image" option appears normally in the Micro-Manager Plugins' menu, but it disappear after the Fiji update/restart. Sadly, I am not able to use the October 25th version as there is a camera error which is solved after the Fiji update but the "Acquire SPIM image" option disappear after today's Fiji update.
>
> Best Regards,
> John
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